1CZ7A

The crystal structure of a minus-end directed microtubule motor protein ncd reveals variable dimer conformations
Total Genus 99
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
99
sequence length
353
structure length
342
Chain Sequence
b'ELETCKEQLFQSNMERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSESPINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKM'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords MICROTUBULE MOTOR PROTEIN NCD
publication title The crystal structure of the minus-end-directed microtubule motor protein ncd reveals variable dimer conformations.
pubmed doi rcsb
source organism Drosophila melanogaster
molecule tags Contractile protein
total genus 99
structure length 342
sequence length 353
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 1999-09-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00225 Kinesin Kinesin motor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.850.10 Alpha Beta 3-Layer(aba) Sandwich Kinesin Kinesin motor domain 1cz7A00
1D1AA 3KINA 4PJMA 4PFOA 2ZFIA 3GBJA 1MMNA 4ANJA 1MNEA 4A5YA 2GM1A 1V8KA 4ETPA 2X7CA 2PG2A 4DBRA 2VASA 2X2RA 4A1ZA 2MYSA 1II6A 3HQDA 3DCBA 4PJLA 2UYIA 3B6UA 1BR1A 5GSZA 4BN2A 4BXNA 4B7BA 2UYMA 2NCDA 2HEHA 1BR2A 3ZFDA 3L1CA 3NWNA 2OWMA 3PXNA 4Y05A 1Q0BA 2G1QA 2ZFJA 4LNUK 4H1GA 4BBGA 1VFWA 2X51A 1V8JA 1FMWA 1F9TA 2X7DA 2FL2A 4GKRA 2V26A 1MMGA 3KENA 2FL6A 4HNAK 3BFNA 2Q2YA 2VB6A 2X7EA 1BG2A 3K5EA 3X2TA 4PJNA 1D1CA 1LVKA 1MMAA 2ZFMA 1SDMA 4A28A 1MMDA 1RY6A 2Y65A 4PJJA 5LT2A 1I6IA 3WRDA 1YRSA 3KARA 4E7ZA 2VVGA 5LT1A 4A14A 3H4SA 4ZHIA 4A51A 3CJOA 5LT4A 1KK7A 1VFVA 1VFZA 3L9HA 1G8XA 1VFXA 2ZFLA 5LT0A 3DC4A 2KINA 1F9VA 1T5CA 2FMEA 1CZ7A 4ZCAA 1D0ZA 2Q2ZA 2XAEA 4PK4A 1X88A 2GRYA 1D0XA 2WOGA 4E7SA 3COBA 1GOJA 1VOMA 3CNZA 4A50A 3T0QA 3ZFCA 1FMVA 3LREA 4UBFA 1BR4A 2Y5WA 2XT3A 5LT3A 1MKJA 4FRZA 1F9WA 4AS7A 4DBQA 2FKYA 4PFPA 2IEHA 3WPNA 1D0YA 3B6VA 1F9UA 5HLEA 3K3BA 1D1BA 1I5SA 2ZFKA 3ZCWA 1LKXA 3U06A 4AP0A 1N6MA
chains in the Genus database with same CATH superfamily
1D1AA 3KINA 4PJMA 4PFOA 2ZFIA 3GBJA 1MMNA 4ANJA 1MNEA 4A5YA 2GM1A 1V8KA 4ETPA 2X7CA 2PG2A 4DBRA 4GKQA 2VASA 2X2RA 4A1ZA 2MYSA 1II6A 3HQDA 3DCBA 4PJLA 2UYIA 3B6UA 1BR1A 4ETPB 5GSZA 4BN2A 4BXNA 4B7BA 2UYMA 2NCDA 2HEHA 4GKPA 1BR2A 3ZFDA 3L1CA 3NWNA 2OWMA 3PXNA 4Y05A 1Q0BA 2G1QA 2ZFJA 4LNUK 4H1GA 4BBGA 1VFWA 2X51A 1V8JA 1FMWA 1F9TA 2X7DA 2FL2A 4GKRA 2V26A 1MMGA 3KENA 2FL6A 4HNAK 3BFNA 2Q2YA 2VB6A 2X7EA 1BG2A 3K5EA 3X2TA 4PJNA 1D1CA 1LVKA 1MMAA 2ZFMA 1SDMA 4A28A 1MMDA 1RY6A 2Y65A 4PJJA 5LT2A 1I6IA 3WRDA 1YRSA 3KARA 4E7ZA 2VVGA 5LT1A 4A14A 3H4SA 4ZHIA 4A51A 3CJOA 5LT4A 1KK7A 1VFVA 1VFZA 3L9HA 1G8XA 1VFXA 2ZFLA 5LT0A 3DC4A 2KINA 1F9VA 1T5CA 2FMEA 1CZ7A 4ZCAA 1D0ZA 2Q2ZA 2XAEA 4PK4A 1X88A 2GRYA 1D0XA 2WOGA 4E7SA 3COBA 1GOJA 1VOMA 3CNZA 4A50A 3T0QA 3ZFCA 1FMVA 2O0AA 3LREA 4UBFA 1BR4A 2Y5WA 2XT3A 5LT3A 1MKJA 4FRZA 1F9WA 4AS7A 4DBQA 2FKYA 4PFPA 2IEHA 3WPNA 1D0YA 3B6VA 1F9UA 5HLEA 3K3BA 1D1BA 1I5SA 2ZFKA 3ZCWA 1LKXA 3U06A 4AP0A 1N6MA
chains in the Genus database with same CATH topology
1D1AA 3KINA 4PJMA 4PFOA 2ZFIA 3GBJA 1MMNA 4ANJA 1MNEA 4A5YA 2GM1A 1V8KA 4ETPA 2X7CA 2PG2A 4DBRA 2VASA 2X2RA 4A1ZA 2MYSA 1II6A 3HQDA 3DCBA 4PJLA 2UYIA 3B6UA 1BR1A 5GSZA 4BN2A 4BXNA 4B7BA 2UYMA 2NCDA 2HEHA 1BR2A 3ZFDA 3L1CA 3NWNA 2OWMA 3PXNA 4Y05A 1Q0BA 2G1QA 2ZFJA 4LNUK 4H1GA 4BBGA 1VFWA 2X51A 1V8JA 1FMWA 1F9TA 2X7DA 2FL2A 4GKRA 2V26A 1MMGA 3KENA 2FL6A 4HNAK 3BFNA 2Q2YA 2VB6A 2X7EA 1BG2A 3K5EA 3X2TA 4PJNA 1D1CA 1LVKA 1MMAA 2ZFMA 1SDMA 4A28A 1MMDA 1RY6A 2Y65A 4PJJA 5LT2A 1I6IA 3WRDA 1YRSA 3KARA 4E7ZA 2VVGA 5LT1A 4A14A 3H4SA 4ZHIA 4A51A 3CJOA 5LT4A 1KK7A 1VFVA 1VFZA 3L9HA 1G8XA 1VFXA 2ZFLA 5LT0A 3DC4A 2KINA 1F9VA 1T5CA 2FMEA 1CZ7A 4ZCAA 1D0ZA 2Q2ZA 2XAEA 4PK4A 1X88A 2GRYA 1D0XA 2WOGA 4E7SA 3COBA 1GOJA 1VOMA 3CNZA 4A50A 3T0QA 3ZFCA 1FMVA 3LREA 4UBFA 1BR4A 2Y5WA 2XT3A 5LT3A 1MKJA 4FRZA 1F9WA 4AS7A 4DBQA 2FKYA 4PFPA 2IEHA 3WPNA 1D0YA 3B6VA 1F9UA 5HLEA 3K3BA 1D1BA 1I5SA 2ZFKA 3ZCWA 1LKXA 3U06A 4AP0A 1N6MA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1D1A A;  3KIN A;  4PJM A;  4PFO A;  2ZFI A;  3GBJ A;  1MMN A;  4ANJ A;  1MNE A;  4A5Y A;  2GM1 A;  1V8K A;  4ETP A;  2X7C A;  2PG2 A;  4DBR A;  2VAS A;  2X2R A;  4A1Z A;  2MYS A;  1II6 A;  3HQD A;  3DCB A;  4PJL A;  2UYI A;  3B6U A;  1BR1 A;  5GSZ A;  4BN2 A;  4BXN A;  4B7B A;  2UYM A;  2NCD A;  2HEH A;  1BR2 A;  3ZFD A;  3L1C A;  3NWN A;  2OWM A;  3PXN A;  4Y05 A;  1Q0B A;  2G1Q A;  2ZFJ A;  4LNU K;  4H1G A;  4BBG A;  1VFW A;  2X51 A;  1V8J A;  1FMW A;  1F9T A;  2X7D A;  2FL2 A;  4GKR A;  2V26 A;  1MMG A;  3KEN A;  2FL6 A;  4HNA K;  3BFN A;  2Q2Y A;  2VB6 A;  2X7E A;  1BG2 A;  3K5E A;  3X2T A;  4PJN A;  1D1C A;  1LVK A;  1MMA A;  2ZFM A;  1SDM A;  4A28 A;  1MMD A;  1RY6 A;  2Y65 A;  4PJJ A;  5LT2 A;  1I6I A;  3WRD A;  1YRS A;  3KAR A;  4E7Z A;  2VVG A;  5LT1 A;  4A14 A;  3H4S A;  4ZHI A;  4A51 A;  3CJO A;  5LT4 A;  1KK7 A;  1VFV A;  1VFZ A;  3L9H A;  1G8X A;  1VFX A;  2ZFL A;  5LT0 A;  3DC4 A;  2KIN A;  1F9V A;  1T5C A;  2FME A;  1CZ7 A;  4ZCA A;  1D0Z A;  2Q2Z A;  2XAE A;  4PK4 A;  1X88 A;  2GRY A;  1D0X A;  2WOG A;  4E7S A;  3COB A;  1GOJ A;  1VOM A;  3CNZ A;  4A50 A;  3T0Q A;  3ZFC A;  1FMV A;  3LRE A;  4UBF A;  1BR4 A;  2Y5W A;  2XT3 A;  5LT3 A;  1MKJ A;  4FRZ A;  1F9W A;  4AS7 A;  4DBQ A;  2FKY A;  4PFP A;  2IEH A;  3WPN A;  1D0Y A;  3B6V A;  1F9U A;  5HLE A;  3K3B A;  1D1B A;  1I5S A;  2ZFK A;  3ZCW A;  1LKX A;  3U06 A;  4AP0 A;  1N6M A; 
#chains in the Genus database with same CATH topology
 1D1A A;  3KIN A;  4PJM A;  4PFO A;  2ZFI A;  3GBJ A;  1MMN A;  4ANJ A;  1MNE A;  4A5Y A;  2GM1 A;  1V8K A;  4ETP A;  2X7C A;  2PG2 A;  4DBR A;  4GKQ A;  2VAS A;  2X2R A;  4A1Z A;  2MYS A;  1II6 A;  3HQD A;  3DCB A;  4PJL A;  2UYI A;  3B6U A;  1BR1 A;  4ETP B;  5GSZ A;  4BN2 A;  4BXN A;  4B7B A;  2UYM A;  2NCD A;  2HEH A;  4GKP A;  1BR2 A;  3ZFD A;  3L1C A;  3NWN A;  2OWM A;  3PXN A;  4Y05 A;  1Q0B A;  2G1Q A;  2ZFJ A;  4LNU K;  4H1G A;  4BBG A;  1VFW A;  2X51 A;  1V8J A;  1FMW A;  1F9T A;  2X7D A;  2FL2 A;  4GKR A;  2V26 A;  1MMG A;  3KEN A;  2FL6 A;  4HNA K;  3BFN A;  2Q2Y A;  2VB6 A;  2X7E A;  1BG2 A;  3K5E A;  3X2T A;  4PJN A;  1D1C A;  1LVK A;  1MMA A;  2ZFM A;  1SDM A;  4A28 A;  1MMD A;  1RY6 A;  2Y65 A;  4PJJ A;  5LT2 A;  1I6I A;  3WRD A;  1YRS A;  3KAR A;  4E7Z A;  2VVG A;  5LT1 A;  4A14 A;  3H4S A;  4ZHI A;  4A51 A;  3CJO A;  5LT4 A;  1KK7 A;  1VFV A;  1VFZ A;  3L9H A;  1G8X A;  1VFX A;  2ZFL A;  5LT0 A;  3DC4 A;  2KIN A;  1F9V A;  1T5C A;  2FME A;  1CZ7 A;  4ZCA A;  1D0Z A;  2Q2Z A;  2XAE A;  4PK4 A;  1X88 A;  2GRY A;  1D0X A;  2WOG A;  4E7S A;  3COB A;  1GOJ A;  1VOM A;  3CNZ A;  4A50 A;  3T0Q A;  3ZFC A;  1FMV A;  2O0A A;  3LRE A;  4UBF A;  1BR4 A;  2Y5W A;  2XT3 A;  5LT3 A;  1MKJ A;  4FRZ A;  1F9W A;  4AS7 A;  4DBQ A;  2FKY A;  4PFP A;  2IEH A;  3WPN A;  1D0Y A;  3B6V A;  1F9U A;  5HLE A;  3K3B A;  1D1B A;  1I5S A;  2ZFK A;  3ZCW A;  1LKX A;  3U06 A;  4AP0 A;  1N6M A; 
#chains in the Genus database with same CATH homology
 1D1A A;  3KIN A;  4PJM A;  4PFO A;  2ZFI A;  3GBJ A;  1MMN A;  4ANJ A;  1MNE A;  4A5Y A;  2GM1 A;  1V8K A;  4ETP A;  2X7C A;  2PG2 A;  4DBR A;  2VAS A;  2X2R A;  4A1Z A;  2MYS A;  1II6 A;  3HQD A;  3DCB A;  4PJL A;  2UYI A;  3B6U A;  1BR1 A;  5GSZ A;  4BN2 A;  4BXN A;  4B7B A;  2UYM A;  2NCD A;  2HEH A;  1BR2 A;  3ZFD A;  3L1C A;  3NWN A;  2OWM A;  3PXN A;  4Y05 A;  1Q0B A;  2G1Q A;  2ZFJ A;  4LNU K;  4H1G A;  4BBG A;  1VFW A;  2X51 A;  1V8J A;  1FMW A;  1F9T A;  2X7D A;  2FL2 A;  4GKR A;  2V26 A;  1MMG A;  3KEN A;  2FL6 A;  4HNA K;  3BFN A;  2Q2Y A;  2VB6 A;  2X7E A;  1BG2 A;  3K5E A;  3X2T A;  4PJN A;  1D1C A;  1LVK A;  1MMA A;  2ZFM A;  1SDM A;  4A28 A;  1MMD A;  1RY6 A;  2Y65 A;  4PJJ A;  5LT2 A;  1I6I A;  3WRD A;  1YRS A;  3KAR A;  4E7Z A;  2VVG A;  5LT1 A;  4A14 A;  3H4S A;  4ZHI A;  4A51 A;  3CJO A;  5LT4 A;  1KK7 A;  1VFV A;  1VFZ A;  3L9H A;  1G8X A;  1VFX A;  2ZFL A;  5LT0 A;  3DC4 A;  2KIN A;  1F9V A;  1T5C A;  2FME A;  1CZ7 A;  4ZCA A;  1D0Z A;  2Q2Z A;  2XAE A;  4PK4 A;  1X88 A;  2GRY A;  1D0X A;  2WOG A;  4E7S A;  3COB A;  1GOJ A;  1VOM A;  3CNZ A;  4A50 A;  3T0Q A;  3ZFC A;  1FMV A;  3LRE A;  4UBF A;  1BR4 A;  2Y5W A;  2XT3 A;  5LT3 A;  1MKJ A;  4FRZ A;  1F9W A;  4AS7 A;  4DBQ A;  2FKY A;  4PFP A;  2IEH A;  3WPN A;  1D0Y A;  3B6V A;  1F9U A;  5HLE A;  3K3B A;  1D1B A;  1I5S A;  2ZFK A;  3ZCW A;  1LKX A;  3U06 A;  4AP0 A;  1N6M A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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