1CZ7A

The crystal structure of a minus-end directed microtubule motor protein ncd reveals variable dimer conformations
Total Genus 99
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
99
sequence length
353
structure length
342
Chain Sequence
ELETCKEQLFQSNMERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSESPINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKM
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords MICROTUBULE MOTOR PROTEIN NCD
publication title The crystal structure of the minus-end-directed microtubule motor protein ncd reveals variable dimer conformations.
pubmed doi rcsb
source organism Drosophila melanogaster
molecule tags Contractile protein
total genus 99
structure length 342
sequence length 353
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 1999-09-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00225 Kinesin Kinesin motor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.850.10 Alpha Beta 3-Layer(aba) Sandwich Kinesin Kinesin motor domain 1cz7A00
5LT1A 2G1QA 1GOJA 3CJOA 1F9WA 3DC4A 1D0YA 4A5YA 1II6A 2X7CA 4Y05A 1MMGA 1D0ZA 4PFPA 4GKRA 1CZ7A 2Y65A 1VFWA 2V26A 1LVKA 3WPNA 4BBGA 2Q2YA 2ZFKA 3L1CA 1MMDA 1BR4A 1BR2A 2Q2ZA 4E7ZA 2IEHA 1V8KA 5LT0A 2VASA 4A50A 1BR1A 2X7DA 1BG2A 1I5SA 1N6MA 3CNZA 2NCDA 4LNUK 1MNEA 3B6UA 3ZFCA 2UYMA 2PG2A 1VOMA 3K5EA 2VB6A 2FKYA 4UBFA 3U06A 3GBJA 4ZHIA 1KK7A 4PK4A 1D0XA 4PFOA 2VVGA 1F9VA 3KENA 4PJMA 2Y5WA 1MMAA 4A51A 2X2RA 1VFZA 3ZCWA 1T5CA 2XT3A 1D1CA 2ZFIA 1F9UA 4BN2A 1YRSA 2UYIA 5LT4A 3LREA 3WRDA 1LKXA 2WOGA 3H4SA 4FRZA 5HLEA 4E7SA 2ZFJA 4ANJA 3T0QA 4A14A 2FMEA 2GRYA 1FMWA 2OWMA 3ZFDA 5GSZA 2ZFMA 4BXNA 2MYSA 4B7BA 3K3BA 4PJJA 1MMNA 3PXNA 1X88A 5LT3A 3BFNA 4H1GA 3B6VA 4AP0A 2KINA 4AS7A 3KARA 4DBRA 3COBA 5LT2A 2X7EA 2ZFLA 1MKJA 1F9TA 1Q0BA 4DBQA 1VFVA 2X51A 4A28A 3HQDA 4ZCAA 2GM1A 1FMVA 3L9HA 3DCBA 1G8XA 1D1BA 4A1ZA 2FL2A 3X2TA 2HEHA 3NWNA 3KINA 4PJLA 2FL6A 1I6IA 1VFXA 1V8JA 2XAEA 4PJNA 1RY6A 4HNAK 4ETPA 1D1AA 1SDMA
chains in the Genus database with same CATH superfamily
5LT1A 2G1QA 1GOJA 3CJOA 1F9WA 3DC4A 1D0YA 4A5YA 1II6A 2X7CA 4Y05A 1MMGA 1D0ZA 4PFPA 4GKRA 1CZ7A 2Y65A 1VFWA 2V26A 1LVKA 3WPNA 4BBGA 2Q2YA 2ZFKA 3L1CA 1MMDA 1BR4A 1BR2A 2Q2ZA 4E7ZA 2IEHA 1V8KA 5LT0A 2VASA 4A50A 1BR1A 2X7DA 1BG2A 1I5SA 1N6MA 3CNZA 2NCDA 4LNUK 1MNEA 2O0AA 3B6UA 3ZFCA 2UYMA 2PG2A 1VOMA 3K5EA 2VB6A 2FKYA 4UBFA 3U06A 3GBJA 4ZHIA 1KK7A 4PK4A 1D0XA 4PFOA 2VVGA 1F9VA 3KENA 4PJMA 2Y5WA 1MMAA 4A51A 2X2RA 1VFZA 3ZCWA 1T5CA 2XT3A 1D1CA 2ZFIA 1F9UA 4BN2A 1YRSA 2UYIA 5LT4A 3LREA 3WRDA 1LKXA 2WOGA 3H4SA 4ETPB 4FRZA 5HLEA 4E7SA 2ZFJA 4ANJA 3T0QA 4A14A 2FMEA 2GRYA 1FMWA 2OWMA 3ZFDA 5GSZA 2ZFMA 4BXNA 2MYSA 4B7BA 3K3BA 4PJJA 1MMNA 3PXNA 1X88A 5LT3A 3BFNA 4H1GA 3B6VA 4AP0A 2KINA 4AS7A 3KARA 4DBRA 3COBA 4GKQA 5LT2A 4GKPA 2X7EA 2ZFLA 1MKJA 1F9TA 1Q0BA 4DBQA 1VFVA 2X51A 4A28A 3HQDA 4ZCAA 2GM1A 1FMVA 3L9HA 3DCBA 1G8XA 1D1BA 4A1ZA 2FL2A 3X2TA 2HEHA 3NWNA 3KINA 4PJLA 2FL6A 1I6IA 1VFXA 1V8JA 2XAEA 4PJNA 1RY6A 4HNAK 4ETPA 1D1AA 1SDMA
chains in the Genus database with same CATH topology
5LT1A 2G1QA 1GOJA 3CJOA 1F9WA 3DC4A 1D0YA 4A5YA 1II6A 2X7CA 4Y05A 1MMGA 1D0ZA 4PFPA 4GKRA 1CZ7A 2Y65A 1VFWA 2V26A 1LVKA 3WPNA 4BBGA 2Q2YA 2ZFKA 3L1CA 1MMDA 1BR4A 1BR2A 2Q2ZA 4E7ZA 2IEHA 1V8KA 5LT0A 2VASA 4A50A 1BR1A 2X7DA 1BG2A 1I5SA 1N6MA 3CNZA 2NCDA 4LNUK 1MNEA 3B6UA 3ZFCA 2UYMA 2PG2A 1VOMA 3K5EA 2VB6A 2FKYA 4UBFA 3U06A 3GBJA 4ZHIA 1KK7A 4PK4A 1D0XA 4PFOA 2VVGA 1F9VA 3KENA 4PJMA 2Y5WA 1MMAA 4A51A 2X2RA 1VFZA 3ZCWA 1T5CA 2XT3A 1D1CA 2ZFIA 1F9UA 4BN2A 1YRSA 2UYIA 5LT4A 3LREA 3WRDA 1LKXA 2WOGA 3H4SA 4FRZA 5HLEA 4E7SA 2ZFJA 4ANJA 3T0QA 4A14A 2FMEA 2GRYA 1FMWA 2OWMA 3ZFDA 5GSZA 2ZFMA 4BXNA 2MYSA 4B7BA 3K3BA 4PJJA 1MMNA 3PXNA 1X88A 5LT3A 3BFNA 4H1GA 3B6VA 4AP0A 2KINA 4AS7A 3KARA 4DBRA 3COBA 5LT2A 2X7EA 2ZFLA 1MKJA 1F9TA 1Q0BA 4DBQA 1VFVA 2X51A 4A28A 3HQDA 4ZCAA 2GM1A 1FMVA 3L9HA 3DCBA 1G8XA 1D1BA 4A1ZA 2FL2A 3X2TA 2HEHA 3NWNA 3KINA 4PJLA 2FL6A 1I6IA 1VFXA 1V8JA 2XAEA 4PJNA 1RY6A 4HNAK 4ETPA 1D1AA 1SDMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5LT1 A;  2G1Q A;  1GOJ A;  3CJO A;  1F9W A;  3DC4 A;  1D0Y A;  4A5Y A;  1II6 A;  2X7C A;  4Y05 A;  1MMG A;  1D0Z A;  4PFP A;  4GKR A;  1CZ7 A;  2Y65 A;  1VFW A;  2V26 A;  1LVK A;  3WPN A;  4BBG A;  2Q2Y A;  2ZFK A;  3L1C A;  1MMD A;  1BR4 A;  1BR2 A;  2Q2Z A;  4E7Z A;  2IEH A;  1V8K A;  5LT0 A;  2VAS A;  4A50 A;  1BR1 A;  2X7D A;  1BG2 A;  1I5S A;  1N6M A;  3CNZ A;  2NCD A;  4LNU K;  1MNE A;  3B6U A;  3ZFC A;  2UYM A;  2PG2 A;  1VOM A;  3K5E A;  2VB6 A;  2FKY A;  4UBF A;  3U06 A;  3GBJ A;  4ZHI A;  1KK7 A;  4PK4 A;  1D0X A;  4PFO A;  2VVG A;  1F9V A;  3KEN A;  4PJM A;  2Y5W A;  1MMA A;  4A51 A;  2X2R A;  1VFZ A;  3ZCW A;  1T5C A;  2XT3 A;  1D1C A;  2ZFI A;  1F9U A;  4BN2 A;  1YRS A;  2UYI A;  5LT4 A;  3LRE A;  3WRD A;  1LKX A;  2WOG A;  3H4S A;  4FRZ A;  5HLE A;  4E7S A;  2ZFJ A;  4ANJ A;  3T0Q A;  4A14 A;  2FME A;  2GRY A;  1FMW A;  2OWM A;  3ZFD A;  5GSZ A;  2ZFM A;  4BXN A;  2MYS A;  4B7B A;  3K3B A;  4PJJ A;  1MMN A;  3PXN A;  1X88 A;  5LT3 A;  3BFN A;  4H1G A;  3B6V A;  4AP0 A;  2KIN A;  4AS7 A;  3KAR A;  4DBR A;  3COB A;  5LT2 A;  2X7E A;  2ZFL A;  1MKJ A;  1F9T A;  1Q0B A;  4DBQ A;  1VFV A;  2X51 A;  4A28 A;  3HQD A;  4ZCA A;  2GM1 A;  1FMV A;  3L9H A;  3DCB A;  1G8X A;  1D1B A;  4A1Z A;  2FL2 A;  3X2T A;  2HEH A;  3NWN A;  3KIN A;  4PJL A;  2FL6 A;  1I6I A;  1VFX A;  1V8J A;  2XAE A;  4PJN A;  1RY6 A;  4HNA K;  4ETP A;  1D1A A;  1SDM A; 
#chains in the Genus database with same CATH topology
 5LT1 A;  2G1Q A;  1GOJ A;  3CJO A;  1F9W A;  3DC4 A;  1D0Y A;  4A5Y A;  1II6 A;  2X7C A;  4Y05 A;  1MMG A;  1D0Z A;  4PFP A;  4GKR A;  1CZ7 A;  2Y65 A;  1VFW A;  2V26 A;  1LVK A;  3WPN A;  4BBG A;  2Q2Y A;  2ZFK A;  3L1C A;  1MMD A;  1BR4 A;  1BR2 A;  2Q2Z A;  4E7Z A;  2IEH A;  1V8K A;  5LT0 A;  2VAS A;  4A50 A;  1BR1 A;  2X7D A;  1BG2 A;  1I5S A;  1N6M A;  3CNZ A;  2NCD A;  4LNU K;  1MNE A;  2O0A A;  3B6U A;  3ZFC A;  2UYM A;  2PG2 A;  1VOM A;  3K5E A;  2VB6 A;  2FKY A;  4UBF A;  3U06 A;  3GBJ A;  4ZHI A;  1KK7 A;  4PK4 A;  1D0X A;  4PFO A;  2VVG A;  1F9V A;  3KEN A;  4PJM A;  2Y5W A;  1MMA A;  4A51 A;  2X2R A;  1VFZ A;  3ZCW A;  1T5C A;  2XT3 A;  1D1C A;  2ZFI A;  1F9U A;  4BN2 A;  1YRS A;  2UYI A;  5LT4 A;  3LRE A;  3WRD A;  1LKX A;  2WOG A;  3H4S A;  4ETP B;  4FRZ A;  5HLE A;  4E7S A;  2ZFJ A;  4ANJ A;  3T0Q A;  4A14 A;  2FME A;  2GRY A;  1FMW A;  2OWM A;  3ZFD A;  5GSZ A;  2ZFM A;  4BXN A;  2MYS A;  4B7B A;  3K3B A;  4PJJ A;  1MMN A;  3PXN A;  1X88 A;  5LT3 A;  3BFN A;  4H1G A;  3B6V A;  4AP0 A;  2KIN A;  4AS7 A;  3KAR A;  4DBR A;  3COB A;  4GKQ A;  5LT2 A;  4GKP A;  2X7E A;  2ZFL A;  1MKJ A;  1F9T A;  1Q0B A;  4DBQ A;  1VFV A;  2X51 A;  4A28 A;  3HQD A;  4ZCA A;  2GM1 A;  1FMV A;  3L9H A;  3DCB A;  1G8X A;  1D1B A;  4A1Z A;  2FL2 A;  3X2T A;  2HEH A;  3NWN A;  3KIN A;  4PJL A;  2FL6 A;  1I6I A;  1VFX A;  1V8J A;  2XAE A;  4PJN A;  1RY6 A;  4HNA K;  4ETP A;  1D1A A;  1SDM A; 
#chains in the Genus database with same CATH homology
 5LT1 A;  2G1Q A;  1GOJ A;  3CJO A;  1F9W A;  3DC4 A;  1D0Y A;  4A5Y A;  1II6 A;  2X7C A;  4Y05 A;  1MMG A;  1D0Z A;  4PFP A;  4GKR A;  1CZ7 A;  2Y65 A;  1VFW A;  2V26 A;  1LVK A;  3WPN A;  4BBG A;  2Q2Y A;  2ZFK A;  3L1C A;  1MMD A;  1BR4 A;  1BR2 A;  2Q2Z A;  4E7Z A;  2IEH A;  1V8K A;  5LT0 A;  2VAS A;  4A50 A;  1BR1 A;  2X7D A;  1BG2 A;  1I5S A;  1N6M A;  3CNZ A;  2NCD A;  4LNU K;  1MNE A;  3B6U A;  3ZFC A;  2UYM A;  2PG2 A;  1VOM A;  3K5E A;  2VB6 A;  2FKY A;  4UBF A;  3U06 A;  3GBJ A;  4ZHI A;  1KK7 A;  4PK4 A;  1D0X A;  4PFO A;  2VVG A;  1F9V A;  3KEN A;  4PJM A;  2Y5W A;  1MMA A;  4A51 A;  2X2R A;  1VFZ A;  3ZCW A;  1T5C A;  2XT3 A;  1D1C A;  2ZFI A;  1F9U A;  4BN2 A;  1YRS A;  2UYI A;  5LT4 A;  3LRE A;  3WRD A;  1LKX A;  2WOG A;  3H4S A;  4FRZ A;  5HLE A;  4E7S A;  2ZFJ A;  4ANJ A;  3T0Q A;  4A14 A;  2FME A;  2GRY A;  1FMW A;  2OWM A;  3ZFD A;  5GSZ A;  2ZFM A;  4BXN A;  2MYS A;  4B7B A;  3K3B A;  4PJJ A;  1MMN A;  3PXN A;  1X88 A;  5LT3 A;  3BFN A;  4H1G A;  3B6V A;  4AP0 A;  2KIN A;  4AS7 A;  3KAR A;  4DBR A;  3COB A;  5LT2 A;  2X7E A;  2ZFL A;  1MKJ A;  1F9T A;  1Q0B A;  4DBQ A;  1VFV A;  2X51 A;  4A28 A;  3HQD A;  4ZCA A;  2GM1 A;  1FMV A;  3L9H A;  3DCB A;  1G8X A;  1D1B A;  4A1Z A;  2FL2 A;  3X2T A;  2HEH A;  3NWN A;  3KIN A;  4PJL A;  2FL6 A;  1I6I A;  1VFX A;  1V8J A;  2XAE A;  4PJN A;  1RY6 A;  4HNA K;  4ETP A;  1D1A A;  1SDM A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...