5LT2A

Nucleotide-free kinesin-1 motor domain, p1 crystal form
Total Genus 98
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
98
sequence length
319
structure length
314
Chain Sequence
ESNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIASKPYAFDRVFQSSTSQEQVYNDAAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGATERFVSSPDEVMDTIDEGKSNRHVAVMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNARTTIVICCSPSSYNESETKSTLLFGQRAKT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Kinesin-like protein
publication title The structural switch of nucleotide-free kinesin.
pubmed doi rcsb
source organism Homo sapiens
molecule tags Motor protein
total genus 98
structure length 314
sequence length 319
chains with identical sequence B, C, D, E, K
ec nomenclature
pdb deposition date 2016-09-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00225 Kinesin Kinesin motor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.850.10 Alpha Beta 3-Layer(aba) Sandwich Kinesin Kinesin motor domain 5lt2A00
3DCBA 1MNEA 4Y05A 1VFWA 1FMWA 2XAEA 2XT3A 3CJOA 3KENA 1BR2A 2Y5WA 2GRYA 2ZFLA 4A51A 5LT4A 3WPNA 2X51A 4ZCAA 5LT3A 2VB6A 1F9VA 1D0YA 4B7BA 1BR4A 2ZFJA 1V8JA 1MMDA 1CZ7A 4A1ZA 2FL6A 3COBA 4LNUK 3ZFDA 2IEHA 3T0QA 2Y65A 3L9HA 4GKRA 1D0ZA 1X88A 2ZFIA 1VFZA 4HNAK 2KINA 4E7SA 2FKYA 4PFPA 1D1BA 4ETPA 2V26A 1MMGA 5LT2A 1D1CA 4DBQA 4PJMA 4ANJA 3ZCWA 1BG2A 1N6MA 4A14A 4E7ZA 3KINA 5HLEA 1II6A 1SDMA 3KARA 3ZFCA 4ZHIA 4FRZA 5LT1A 2HEHA 3GBJA 2PG2A 4PJJA 4AP0A 1F9UA 1VOMA 1BR1A 2G1QA 1VFVA 4PJNA 3BFNA 3NWNA 1I6IA 1MMNA 1VFXA 4UBFA 2NCDA 2VASA 2OWMA 3CNZA 4PK4A 2UYMA 3HQDA 3K5EA 4PJLA 2Q2ZA 1T5CA 1FMVA 1YRSA 1Q0BA 2UYIA 3WRDA 1G8XA 3X2TA 2Q2YA 1F9TA 4A5YA 3K3BA 4H1GA 4A28A 3U06A 1F9WA 3L1CA 2X7EA 1V8KA 3B6UA 2MYSA 2X7DA 2X7CA 4BXNA 1D1AA 1MMAA 3PXNA 2ZFMA 4PFOA 2ZFKA 4BBGA 1MKJA 4DBRA 5GSZA 3LREA 2X2RA 2WOGA 5LT0A 3DC4A 3H4SA 3B6VA 4BN2A 1KK7A 4AS7A 2FL2A 1GOJA 2VVGA 2GM1A 1D0XA 1LKXA 2FMEA 1RY6A 1I5SA 1LVKA 4A50A
chains in the Genus database with same CATH superfamily
3DCBA 1MNEA 4Y05A 1VFWA 1FMWA 2XAEA 2XT3A 3CJOA 3KENA 1BR2A 2Y5WA 2GRYA 2ZFLA 4A51A 5LT4A 3WPNA 2X51A 4ZCAA 5LT3A 2VB6A 1F9VA 1D0YA 4B7BA 1BR4A 2ZFJA 1V8JA 1MMDA 1CZ7A 4A1ZA 2FL6A 3COBA 4LNUK 3ZFDA 2IEHA 3T0QA 2Y65A 3L9HA 4GKRA 1D0ZA 1X88A 2ZFIA 1VFZA 4HNAK 2KINA 4E7SA 2FKYA 4PFPA 1D1BA 4GKQA 4ETPA 2V26A 1MMGA 5LT2A 1D1CA 4DBQA 4PJMA 4ANJA 3ZCWA 1BG2A 1N6MA 4A14A 4E7ZA 3KINA 5HLEA 1II6A 1SDMA 3KARA 3ZFCA 4ZHIA 4FRZA 4GKPA 2HEHA 5LT1A 3GBJA 2PG2A 4PJJA 4AP0A 1F9UA 1VOMA 1BR1A 2G1QA 1VFVA 2O0AA 4PJNA 3BFNA 3NWNA 1I6IA 1MMNA 1VFXA 4UBFA 2NCDA 2VASA 2OWMA 3CNZA 4PK4A 2UYMA 3HQDA 3K5EA 4PJLA 2Q2ZA 1T5CA 1FMVA 1YRSA 1Q0BA 2UYIA 3WRDA 1G8XA 3X2TA 2Q2YA 1F9TA 4A5YA 3K3BA 4H1GA 4A28A 3U06A 1F9WA 3L1CA 2X7EA 1V8KA 3B6UA 2MYSA 2X7DA 2X7CA 4BXNA 1D1AA 1MMAA 3PXNA 2ZFMA 4PFOA 2ZFKA 4BBGA 1MKJA 4DBRA 5GSZA 3LREA 2X2RA 2WOGA 5LT0A 3DC4A 3H4SA 3B6VA 4BN2A 1KK7A 4AS7A 2FL2A 1GOJA 2VVGA 2GM1A 1D0XA 1LKXA 4ETPB 2FMEA 1RY6A 1I5SA 1LVKA 4A50A
chains in the Genus database with same CATH topology
3DCBA 1MNEA 4Y05A 1VFWA 1FMWA 2XAEA 2XT3A 3CJOA 3KENA 1BR2A 2Y5WA 2GRYA 2ZFLA 4A51A 5LT4A 3WPNA 2X51A 4ZCAA 5LT3A 2VB6A 1F9VA 1D0YA 4B7BA 1BR4A 2ZFJA 1V8JA 1MMDA 1CZ7A 4A1ZA 2FL6A 3COBA 4LNUK 3ZFDA 2IEHA 3T0QA 2Y65A 3L9HA 4GKRA 1D0ZA 1X88A 2ZFIA 1VFZA 4HNAK 2KINA 4E7SA 2FKYA 4PFPA 1D1BA 4ETPA 2V26A 1MMGA 5LT2A 1D1CA 4DBQA 4PJMA 4ANJA 3ZCWA 1BG2A 1N6MA 4A14A 4E7ZA 3KINA 5HLEA 1II6A 1SDMA 3KARA 3ZFCA 4ZHIA 4FRZA 5LT1A 2HEHA 3GBJA 2PG2A 4PJJA 4AP0A 1F9UA 1VOMA 1BR1A 2G1QA 1VFVA 4PJNA 3BFNA 3NWNA 1I6IA 1MMNA 1VFXA 4UBFA 2NCDA 2VASA 2OWMA 3CNZA 4PK4A 2UYMA 3HQDA 3K5EA 4PJLA 2Q2ZA 1T5CA 1FMVA 1YRSA 1Q0BA 2UYIA 3WRDA 1G8XA 3X2TA 2Q2YA 1F9TA 4A5YA 3K3BA 4H1GA 4A28A 3U06A 1F9WA 3L1CA 2X7EA 1V8KA 3B6UA 2MYSA 2X7DA 2X7CA 4BXNA 1D1AA 1MMAA 3PXNA 2ZFMA 4PFOA 2ZFKA 4BBGA 1MKJA 4DBRA 5GSZA 3LREA 2X2RA 2WOGA 5LT0A 3DC4A 3H4SA 3B6VA 4BN2A 1KK7A 4AS7A 2FL2A 1GOJA 2VVGA 2GM1A 1D0XA 1LKXA 2FMEA 1RY6A 1I5SA 1LVKA 4A50A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3DCB A;  1MNE A;  4Y05 A;  1VFW A;  1FMW A;  2XAE A;  2XT3 A;  3CJO A;  3KEN A;  1BR2 A;  2Y5W A;  2GRY A;  2ZFL A;  4A51 A;  5LT4 A;  3WPN A;  2X51 A;  4ZCA A;  5LT3 A;  2VB6 A;  1F9V A;  1D0Y A;  4B7B A;  1BR4 A;  2ZFJ A;  1V8J A;  1MMD A;  1CZ7 A;  4A1Z A;  2FL6 A;  3COB A;  4LNU K;  3ZFD A;  2IEH A;  3T0Q A;  2Y65 A;  3L9H A;  4GKR A;  1D0Z A;  1X88 A;  2ZFI A;  1VFZ A;  4HNA K;  2KIN A;  4E7S A;  2FKY A;  4PFP A;  1D1B A;  4ETP A;  2V26 A;  1MMG A;  5LT2 A;  1D1C A;  4DBQ A;  4PJM A;  4ANJ A;  3ZCW A;  1BG2 A;  1N6M A;  4A14 A;  4E7Z A;  3KIN A;  5HLE A;  1II6 A;  1SDM A;  3KAR A;  3ZFC A;  4ZHI A;  4FRZ A;  5LT1 A;  2HEH A;  3GBJ A;  2PG2 A;  4PJJ A;  4AP0 A;  1F9U A;  1VOM A;  1BR1 A;  2G1Q A;  1VFV A;  4PJN A;  3BFN A;  3NWN A;  1I6I A;  1MMN A;  1VFX A;  4UBF A;  2NCD A;  2VAS A;  2OWM A;  3CNZ A;  4PK4 A;  2UYM A;  3HQD A;  3K5E A;  4PJL A;  2Q2Z A;  1T5C A;  1FMV A;  1YRS A;  1Q0B A;  2UYI A;  3WRD A;  1G8X A;  3X2T A;  2Q2Y A;  1F9T A;  4A5Y A;  3K3B A;  4H1G A;  4A28 A;  3U06 A;  1F9W A;  3L1C A;  2X7E A;  1V8K A;  3B6U A;  2MYS A;  2X7D A;  2X7C A;  4BXN A;  1D1A A;  1MMA A;  3PXN A;  2ZFM A;  4PFO A;  2ZFK A;  4BBG A;  1MKJ A;  4DBR A;  5GSZ A;  3LRE A;  2X2R A;  2WOG A;  5LT0 A;  3DC4 A;  3H4S A;  3B6V A;  4BN2 A;  1KK7 A;  4AS7 A;  2FL2 A;  1GOJ A;  2VVG A;  2GM1 A;  1D0X A;  1LKX A;  2FME A;  1RY6 A;  1I5S A;  1LVK A;  4A50 A; 
#chains in the Genus database with same CATH topology
 3DCB A;  1MNE A;  4Y05 A;  1VFW A;  1FMW A;  2XAE A;  2XT3 A;  3CJO A;  3KEN A;  1BR2 A;  2Y5W A;  2GRY A;  2ZFL A;  4A51 A;  5LT4 A;  3WPN A;  2X51 A;  4ZCA A;  5LT3 A;  2VB6 A;  1F9V A;  1D0Y A;  4B7B A;  1BR4 A;  2ZFJ A;  1V8J A;  1MMD A;  1CZ7 A;  4A1Z A;  2FL6 A;  3COB A;  4LNU K;  3ZFD A;  2IEH A;  3T0Q A;  2Y65 A;  3L9H A;  4GKR A;  1D0Z A;  1X88 A;  2ZFI A;  1VFZ A;  4HNA K;  2KIN A;  4E7S A;  2FKY A;  4PFP A;  1D1B A;  4GKQ A;  4ETP A;  2V26 A;  1MMG A;  5LT2 A;  1D1C A;  4DBQ A;  4PJM A;  4ANJ A;  3ZCW A;  1BG2 A;  1N6M A;  4A14 A;  4E7Z A;  3KIN A;  5HLE A;  1II6 A;  1SDM A;  3KAR A;  3ZFC A;  4ZHI A;  4FRZ A;  4GKP A;  2HEH A;  5LT1 A;  3GBJ A;  2PG2 A;  4PJJ A;  4AP0 A;  1F9U A;  1VOM A;  1BR1 A;  2G1Q A;  1VFV A;  2O0A A;  4PJN A;  3BFN A;  3NWN A;  1I6I A;  1MMN A;  1VFX A;  4UBF A;  2NCD A;  2VAS A;  2OWM A;  3CNZ A;  4PK4 A;  2UYM A;  3HQD A;  3K5E A;  4PJL A;  2Q2Z A;  1T5C A;  1FMV A;  1YRS A;  1Q0B A;  2UYI A;  3WRD A;  1G8X A;  3X2T A;  2Q2Y A;  1F9T A;  4A5Y A;  3K3B A;  4H1G A;  4A28 A;  3U06 A;  1F9W A;  3L1C A;  2X7E A;  1V8K A;  3B6U A;  2MYS A;  2X7D A;  2X7C A;  4BXN A;  1D1A A;  1MMA A;  3PXN A;  2ZFM A;  4PFO A;  2ZFK A;  4BBG A;  1MKJ A;  4DBR A;  5GSZ A;  3LRE A;  2X2R A;  2WOG A;  5LT0 A;  3DC4 A;  3H4S A;  3B6V A;  4BN2 A;  1KK7 A;  4AS7 A;  2FL2 A;  1GOJ A;  2VVG A;  2GM1 A;  1D0X A;  1LKX A;  4ETP B;  2FME A;  1RY6 A;  1I5S A;  1LVK A;  4A50 A; 
#chains in the Genus database with same CATH homology
 3DCB A;  1MNE A;  4Y05 A;  1VFW A;  1FMW A;  2XAE A;  2XT3 A;  3CJO A;  3KEN A;  1BR2 A;  2Y5W A;  2GRY A;  2ZFL A;  4A51 A;  5LT4 A;  3WPN A;  2X51 A;  4ZCA A;  5LT3 A;  2VB6 A;  1F9V A;  1D0Y A;  4B7B A;  1BR4 A;  2ZFJ A;  1V8J A;  1MMD A;  1CZ7 A;  4A1Z A;  2FL6 A;  3COB A;  4LNU K;  3ZFD A;  2IEH A;  3T0Q A;  2Y65 A;  3L9H A;  4GKR A;  1D0Z A;  1X88 A;  2ZFI A;  1VFZ A;  4HNA K;  2KIN A;  4E7S A;  2FKY A;  4PFP A;  1D1B A;  4ETP A;  2V26 A;  1MMG A;  5LT2 A;  1D1C A;  4DBQ A;  4PJM A;  4ANJ A;  3ZCW A;  1BG2 A;  1N6M A;  4A14 A;  4E7Z A;  3KIN A;  5HLE A;  1II6 A;  1SDM A;  3KAR A;  3ZFC A;  4ZHI A;  4FRZ A;  5LT1 A;  2HEH A;  3GBJ A;  2PG2 A;  4PJJ A;  4AP0 A;  1F9U A;  1VOM A;  1BR1 A;  2G1Q A;  1VFV A;  4PJN A;  3BFN A;  3NWN A;  1I6I A;  1MMN A;  1VFX A;  4UBF A;  2NCD A;  2VAS A;  2OWM A;  3CNZ A;  4PK4 A;  2UYM A;  3HQD A;  3K5E A;  4PJL A;  2Q2Z A;  1T5C A;  1FMV A;  1YRS A;  1Q0B A;  2UYI A;  3WRD A;  1G8X A;  3X2T A;  2Q2Y A;  1F9T A;  4A5Y A;  3K3B A;  4H1G A;  4A28 A;  3U06 A;  1F9W A;  3L1C A;  2X7E A;  1V8K A;  3B6U A;  2MYS A;  2X7D A;  2X7C A;  4BXN A;  1D1A A;  1MMA A;  3PXN A;  2ZFM A;  4PFO A;  2ZFK A;  4BBG A;  1MKJ A;  4DBR A;  5GSZ A;  3LRE A;  2X2R A;  2WOG A;  5LT0 A;  3DC4 A;  3H4S A;  3B6V A;  4BN2 A;  1KK7 A;  4AS7 A;  2FL2 A;  1GOJ A;  2VVG A;  2GM1 A;  1D0X A;  1LKX A;  2FME A;  1RY6 A;  1I5S A;  1LVK A;  4A50 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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