1GOJA

Structure of a fast kinesin: implications for atpase mechanism and interactions with microtubules
Total Genus 107
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
107
sequence length
354
structure length
354
Chain Sequence
b'SSSANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSPAELKQMLAKAKTQ'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords KINESIN HEAVY CHAIN
publication title Structure of a Fast Kinesin: Implications for ATPase Mechanism and Interactions with Microtubules
pubmed doi rcsb
source organism Neurospora crassa
molecule tags Motor protein
total genus 107
structure length 354
sequence length 354
ec nomenclature ec 3.6.4.4: Transferred entry: 5.6.1.3.
pdb deposition date 2001-10-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00225 Kinesin Kinesin motor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.850.10 Alpha Beta 3-Layer(aba) Sandwich Kinesin Kinesin motor domain 1gojA00
1D0XA 2NCDA 4BN2A 4PK4A 4A28A 1YRSA 1T5CA 4PJLA 3DC4A 3K5EA 2HEHA 4UBFA 2X51A 4A51A 1I5SA 2Q2ZA 4PJMA 1MMGA 1D0YA 4A14A 2X7EA 1D1BA 1MNEA 4PJNA 3CJOA 4ETPA 2XAEA 2OWMA 4A5YA 2UYIA 4DBQA 1MKJA 2VASA 3PXNA 3KENA 2MYSA 3B6UA 5LT3A 1VFZA 2ZFJA 3LREA 4PFPA 2VVGA 1VFXA 2ZFLA 2FL2A 2V26A 4H1GA 4Y05A 3KARA 2Q2YA 4AS7A 3NWNA 5GSZA 2PG2A 4ZHIA 1BG2A 1BR2A 1KK7A 1MMDA 2KINA 4A50A 4ANJA 5LT4A 1SDMA 4B7BA 3B6VA 2X7CA 2X7DA 3CNZA 1D0ZA 5LT0A 2FKYA 2GRYA 4E7ZA 4BBGA 4FRZA 1F9TA 1RY6A 2XT3A 3ZFDA 1VFVA 2ZFKA 3T0QA 2IEHA 1X88A 3GBJA 3HQDA 3DCBA 1MMNA 1VFWA 1FMWA 2VB6A 2WOGA 4PJJA 5LT1A 3ZFCA 1BR4A 1V8KA 2G1QA 3COBA 4GKRA 3KINA 1N6MA 1F9WA 1II6A 3L9HA 1LKXA 1I6IA 4BXNA 1LVKA 1VOMA 2ZFMA 3U06A 3H4SA 2X2RA 1BR1A 5LT2A 2UYMA 1D1CA 2ZFIA 4DBRA 4E7SA 3X2TA 4PFOA 1CZ7A 1GOJA 3BFNA 1D1AA 2FL6A 1MMAA 3L1CA 1F9UA 5HLEA 4AP0A 4ZCAA 1V8JA 2Y65A 4A1ZA 3K3BA 1FMVA 3WPNA 4LNUK 1F9VA 2Y5WA 1Q0BA 3WRDA 1G8XA 2GM1A 3ZCWA 2FMEA 4HNAK
chains in the Genus database with same CATH superfamily
1D0XA 2NCDA 4BN2A 4PK4A 4A28A 1YRSA 1T5CA 4PJLA 3DC4A 4GKPA 3K5EA 2HEHA 4UBFA 2X51A 4A51A 1I5SA 2Q2ZA 4PJMA 1MMGA 1D0YA 4A14A 2X7EA 1D1BA 1MNEA 4PJNA 3CJOA 4ETPA 2XAEA 2OWMA 4A5YA 2UYIA 4DBQA 1MKJA 2VASA 3PXNA 3KENA 2MYSA 3B6UA 5LT3A 1VFZA 2ZFJA 3LREA 4PFPA 2VVGA 1VFXA 2ZFLA 2FL2A 2V26A 4H1GA 4Y05A 3KARA 2Q2YA 4AS7A 3NWNA 5GSZA 2PG2A 4ZHIA 1BG2A 1BR2A 1KK7A 1MMDA 2KINA 4A50A 4ANJA 5LT4A 1SDMA 4B7BA 3B6VA 2X7CA 2X7DA 3CNZA 1D0ZA 5LT0A 2FKYA 2GRYA 4E7ZA 4BBGA 4FRZA 1F9TA 1RY6A 2XT3A 3ZFDA 1VFVA 2O0AA 2ZFKA 3T0QA 2IEHA 1X88A 3GBJA 3HQDA 3DCBA 1MMNA 1VFWA 1FMWA 2VB6A 2WOGA 4PJJA 5LT1A 3ZFCA 1BR4A 1V8KA 2G1QA 3COBA 4GKRA 3KINA 1N6MA 1F9WA 1II6A 3L9HA 1LKXA 1I6IA 4BXNA 1LVKA 1VOMA 2ZFMA 3U06A 3H4SA 2X2RA 1BR1A 5LT2A 2UYMA 1D1CA 2ZFIA 4DBRA 4E7SA 3X2TA 4PFOA 1CZ7A 1GOJA 3BFNA 1D1AA 2FL6A 4GKQA 1MMAA 3L1CA 1F9UA 5HLEA 4AP0A 4ZCAA 1V8JA 2Y65A 4A1ZA 3K3BA 1FMVA 3WPNA 4LNUK 1F9VA 2Y5WA 1Q0BA 3WRDA 1G8XA 2GM1A 3ZCWA 2FMEA 4ETPB 4HNAK
chains in the Genus database with same CATH topology
1D0XA 2NCDA 4BN2A 4PK4A 4A28A 1YRSA 1T5CA 4PJLA 3DC4A 3K5EA 2HEHA 4UBFA 2X51A 4A51A 1I5SA 2Q2ZA 4PJMA 1MMGA 1D0YA 4A14A 2X7EA 1D1BA 1MNEA 4PJNA 3CJOA 4ETPA 2XAEA 2OWMA 4A5YA 2UYIA 4DBQA 1MKJA 2VASA 3PXNA 3KENA 2MYSA 3B6UA 5LT3A 1VFZA 2ZFJA 3LREA 4PFPA 2VVGA 1VFXA 2ZFLA 2FL2A 2V26A 4H1GA 4Y05A 3KARA 2Q2YA 4AS7A 3NWNA 5GSZA 2PG2A 4ZHIA 1BG2A 1BR2A 1KK7A 1MMDA 2KINA 4A50A 4ANJA 5LT4A 1SDMA 4B7BA 3B6VA 2X7CA 2X7DA 3CNZA 1D0ZA 5LT0A 2FKYA 2GRYA 4E7ZA 4BBGA 4FRZA 1F9TA 1RY6A 2XT3A 3ZFDA 1VFVA 2ZFKA 3T0QA 2IEHA 1X88A 3GBJA 3HQDA 3DCBA 1MMNA 1VFWA 1FMWA 2VB6A 2WOGA 4PJJA 5LT1A 3ZFCA 1BR4A 1V8KA 2G1QA 3COBA 4GKRA 3KINA 1N6MA 1F9WA 1II6A 3L9HA 1LKXA 1I6IA 4BXNA 1LVKA 1VOMA 2ZFMA 3U06A 3H4SA 2X2RA 1BR1A 5LT2A 2UYMA 1D1CA 2ZFIA 4DBRA 4E7SA 3X2TA 4PFOA 1CZ7A 1GOJA 3BFNA 1D1AA 2FL6A 1MMAA 3L1CA 1F9UA 5HLEA 4AP0A 4ZCAA 1V8JA 2Y65A 4A1ZA 3K3BA 1FMVA 3WPNA 4LNUK 1F9VA 2Y5WA 1Q0BA 3WRDA 1G8XA 2GM1A 3ZCWA 2FMEA 4HNAK
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1D0X A;  2NCD A;  4BN2 A;  4PK4 A;  4A28 A;  1YRS A;  1T5C A;  4PJL A;  3DC4 A;  3K5E A;  2HEH A;  4UBF A;  2X51 A;  4A51 A;  1I5S A;  2Q2Z A;  4PJM A;  1MMG A;  1D0Y A;  4A14 A;  2X7E A;  1D1B A;  1MNE A;  4PJN A;  3CJO A;  4ETP A;  2XAE A;  2OWM A;  4A5Y A;  2UYI A;  4DBQ A;  1MKJ A;  2VAS A;  3PXN A;  3KEN A;  2MYS A;  3B6U A;  5LT3 A;  1VFZ A;  2ZFJ A;  3LRE A;  4PFP A;  2VVG A;  1VFX A;  2ZFL A;  2FL2 A;  2V26 A;  4H1G A;  4Y05 A;  3KAR A;  2Q2Y A;  4AS7 A;  3NWN A;  5GSZ A;  2PG2 A;  4ZHI A;  1BG2 A;  1BR2 A;  1KK7 A;  1MMD A;  2KIN A;  4A50 A;  4ANJ A;  5LT4 A;  1SDM A;  4B7B A;  3B6V A;  2X7C A;  2X7D A;  3CNZ A;  1D0Z A;  5LT0 A;  2FKY A;  2GRY A;  4E7Z A;  4BBG A;  4FRZ A;  1F9T A;  1RY6 A;  2XT3 A;  3ZFD A;  1VFV A;  2ZFK A;  3T0Q A;  2IEH A;  1X88 A;  3GBJ A;  3HQD A;  3DCB A;  1MMN A;  1VFW A;  1FMW A;  2VB6 A;  2WOG A;  4PJJ A;  5LT1 A;  3ZFC A;  1BR4 A;  1V8K A;  2G1Q A;  3COB A;  4GKR A;  3KIN A;  1N6M A;  1F9W A;  1II6 A;  3L9H A;  1LKX A;  1I6I A;  4BXN A;  1LVK A;  1VOM A;  2ZFM A;  3U06 A;  3H4S A;  2X2R A;  1BR1 A;  5LT2 A;  2UYM A;  1D1C A;  2ZFI A;  4DBR A;  4E7S A;  3X2T A;  4PFO A;  1CZ7 A;  1GOJ A;  3BFN A;  1D1A A;  2FL6 A;  1MMA A;  3L1C A;  1F9U A;  5HLE A;  4AP0 A;  4ZCA A;  1V8J A;  2Y65 A;  4A1Z A;  3K3B A;  1FMV A;  3WPN A;  4LNU K;  1F9V A;  2Y5W A;  1Q0B A;  3WRD A;  1G8X A;  2GM1 A;  3ZCW A;  2FME A;  4HNA K; 
#chains in the Genus database with same CATH topology
 1D0X A;  2NCD A;  4BN2 A;  4PK4 A;  4A28 A;  1YRS A;  1T5C A;  4PJL A;  3DC4 A;  4GKP A;  3K5E A;  2HEH A;  4UBF A;  2X51 A;  4A51 A;  1I5S A;  2Q2Z A;  4PJM A;  1MMG A;  1D0Y A;  4A14 A;  2X7E A;  1D1B A;  1MNE A;  4PJN A;  3CJO A;  4ETP A;  2XAE A;  2OWM A;  4A5Y A;  2UYI A;  4DBQ A;  1MKJ A;  2VAS A;  3PXN A;  3KEN A;  2MYS A;  3B6U A;  5LT3 A;  1VFZ A;  2ZFJ A;  3LRE A;  4PFP A;  2VVG A;  1VFX A;  2ZFL A;  2FL2 A;  2V26 A;  4H1G A;  4Y05 A;  3KAR A;  2Q2Y A;  4AS7 A;  3NWN A;  5GSZ A;  2PG2 A;  4ZHI A;  1BG2 A;  1BR2 A;  1KK7 A;  1MMD A;  2KIN A;  4A50 A;  4ANJ A;  5LT4 A;  1SDM A;  4B7B A;  3B6V A;  2X7C A;  2X7D A;  3CNZ A;  1D0Z A;  5LT0 A;  2FKY A;  2GRY A;  4E7Z A;  4BBG A;  4FRZ A;  1F9T A;  1RY6 A;  2XT3 A;  3ZFD A;  1VFV A;  2O0A A;  2ZFK A;  3T0Q A;  2IEH A;  1X88 A;  3GBJ A;  3HQD A;  3DCB A;  1MMN A;  1VFW A;  1FMW A;  2VB6 A;  2WOG A;  4PJJ A;  5LT1 A;  3ZFC A;  1BR4 A;  1V8K A;  2G1Q A;  3COB A;  4GKR A;  3KIN A;  1N6M A;  1F9W A;  1II6 A;  3L9H A;  1LKX A;  1I6I A;  4BXN A;  1LVK A;  1VOM A;  2ZFM A;  3U06 A;  3H4S A;  2X2R A;  1BR1 A;  5LT2 A;  2UYM A;  1D1C A;  2ZFI A;  4DBR A;  4E7S A;  3X2T A;  4PFO A;  1CZ7 A;  1GOJ A;  3BFN A;  1D1A A;  2FL6 A;  4GKQ A;  1MMA A;  3L1C A;  1F9U A;  5HLE A;  4AP0 A;  4ZCA A;  1V8J A;  2Y65 A;  4A1Z A;  3K3B A;  1FMV A;  3WPN A;  4LNU K;  1F9V A;  2Y5W A;  1Q0B A;  3WRD A;  1G8X A;  2GM1 A;  3ZCW A;  2FME A;  4ETP B;  4HNA K; 
#chains in the Genus database with same CATH homology
 1D0X A;  2NCD A;  4BN2 A;  4PK4 A;  4A28 A;  1YRS A;  1T5C A;  4PJL A;  3DC4 A;  3K5E A;  2HEH A;  4UBF A;  2X51 A;  4A51 A;  1I5S A;  2Q2Z A;  4PJM A;  1MMG A;  1D0Y A;  4A14 A;  2X7E A;  1D1B A;  1MNE A;  4PJN A;  3CJO A;  4ETP A;  2XAE A;  2OWM A;  4A5Y A;  2UYI A;  4DBQ A;  1MKJ A;  2VAS A;  3PXN A;  3KEN A;  2MYS A;  3B6U A;  5LT3 A;  1VFZ A;  2ZFJ A;  3LRE A;  4PFP A;  2VVG A;  1VFX A;  2ZFL A;  2FL2 A;  2V26 A;  4H1G A;  4Y05 A;  3KAR A;  2Q2Y A;  4AS7 A;  3NWN A;  5GSZ A;  2PG2 A;  4ZHI A;  1BG2 A;  1BR2 A;  1KK7 A;  1MMD A;  2KIN A;  4A50 A;  4ANJ A;  5LT4 A;  1SDM A;  4B7B A;  3B6V A;  2X7C A;  2X7D A;  3CNZ A;  1D0Z A;  5LT0 A;  2FKY A;  2GRY A;  4E7Z A;  4BBG A;  4FRZ A;  1F9T A;  1RY6 A;  2XT3 A;  3ZFD A;  1VFV A;  2ZFK A;  3T0Q A;  2IEH A;  1X88 A;  3GBJ A;  3HQD A;  3DCB A;  1MMN A;  1VFW A;  1FMW A;  2VB6 A;  2WOG A;  4PJJ A;  5LT1 A;  3ZFC A;  1BR4 A;  1V8K A;  2G1Q A;  3COB A;  4GKR A;  3KIN A;  1N6M A;  1F9W A;  1II6 A;  3L9H A;  1LKX A;  1I6I A;  4BXN A;  1LVK A;  1VOM A;  2ZFM A;  3U06 A;  3H4S A;  2X2R A;  1BR1 A;  5LT2 A;  2UYM A;  1D1C A;  2ZFI A;  4DBR A;  4E7S A;  3X2T A;  4PFO A;  1CZ7 A;  1GOJ A;  3BFN A;  1D1A A;  2FL6 A;  1MMA A;  3L1C A;  1F9U A;  5HLE A;  4AP0 A;  4ZCA A;  1V8J A;  2Y65 A;  4A1Z A;  3K3B A;  1FMV A;  3WPN A;  4LNU K;  1F9V A;  2Y5W A;  1Q0B A;  3WRD A;  1G8X A;  2GM1 A;  3ZCW A;  2FME A;  4HNA K; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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