1GOJA

Structure of a fast kinesin: implications for atpase mechanism and interactions with microtubules
Total Genus 107
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
107
sequence length
354
structure length
354
Chain Sequence
SSSANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSPAELKQMLAKAKTQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords KINESIN HEAVY CHAIN
publication title Structure of a Fast Kinesin: Implications for ATPase Mechanism and Interactions with Microtubules
pubmed doi rcsb
source organism Neurospora crassa
molecule tags Motor protein
total genus 107
structure length 354
sequence length 354
ec nomenclature ec 3.6.4.4: Transferred entry: 5.6.1.3.
pdb deposition date 2001-10-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00225 Kinesin Kinesin motor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.850.10 Alpha Beta 3-Layer(aba) Sandwich Kinesin Kinesin motor domain 1gojA00
1LVKA 2VASA 2FL6A 2V26A 1MNEA 4B7BA 4PJJA 1CZ7A 1MMNA 2XAEA 3LREA 5LT4A 1D1AA 1D1BA 2Y5WA 2ZFIA 1BG2A 4PK4A 4ETPA 1F9TA 3T0QA 2NCDA 2UYMA 3L1CA 2VVGA 1F9VA 1BR2A 3HQDA 2IEHA 1BR4A 2HEHA 1MMDA 3DC4A 1F9UA 4PFPA 4E7ZA 1FMWA 4A51A 1D0XA 1V8JA 4FRZA 1Q0BA 1FMVA 1I5SA 1MMAA 4AS7A 3KINA 1KK7A 3DCBA 3X2TA 3B6VA 1I6IA 4DBQA 3K5EA 1X88A 3KARA 1VFWA 3L9HA 4H1GA 2VB6A 1D0YA 1II6A 1G8XA 3ZFDA 1GOJA 2GRYA 2WOGA 2ZFJA 3WPNA 4DBRA 2OWMA 1VFZA 1VFVA 2PG2A 4ZHIA 3B6UA 4PJMA 2ZFMA 4BN2A 4E7SA 4BBGA 3K3BA 3BFNA 1F9WA 2Q2YA 2FL2A 4A28A 1MKJA 3H4SA 4HNAK 1MMGA 3COBA 1VOMA 2KINA 4PFOA 1RY6A 3KENA 1D1CA 2FKYA 4A50A 2MYSA 1T5CA 3GBJA 3WRDA 4A1ZA 3CJOA 2ZFKA 4A14A 2FMEA 1SDMA 2X51A 5LT0A 1N6MA 2XT3A 4UBFA 2X7DA 4ZCAA 4PJLA 3ZCWA 2X7CA 5HLEA 2Y65A 5LT2A 5GSZA 4A5YA 4GKRA 3PXNA 4AP0A 3CNZA 1D0ZA 3ZFCA 1BR1A 5LT3A 1LKXA 2G1QA 2Q2ZA 4BXNA 4ANJA 2GM1A 1VFXA 1YRSA 2X2RA 2ZFLA 4PJNA 4Y05A 5LT1A 3NWNA 2UYIA 4LNUK 2X7EA 1V8KA 3U06A
chains in the Genus database with same CATH superfamily
1LVKA 4GKPA 2VASA 2FL6A 2V26A 1MNEA 4B7BA 4PJJA 1CZ7A 1MMNA 2XAEA 2O0AA 3LREA 5LT4A 1D1AA 1D1BA 2Y5WA 2ZFIA 1BG2A 4PK4A 4ETPA 1F9TA 3T0QA 2NCDA 2UYMA 3L1CA 2VVGA 1F9VA 1BR2A 3HQDA 2IEHA 1BR4A 2HEHA 1MMDA 3DC4A 1F9UA 4PFPA 4E7ZA 1FMWA 4A51A 1D0XA 1V8JA 4FRZA 1Q0BA 1FMVA 1I5SA 1MMAA 4AS7A 3KINA 1KK7A 3DCBA 3X2TA 3B6VA 1I6IA 4DBQA 3K5EA 1X88A 3KARA 1VFWA 3L9HA 4H1GA 2VB6A 1D0YA 1II6A 1G8XA 3ZFDA 1GOJA 2GRYA 2WOGA 2ZFJA 3WPNA 4DBRA 2OWMA 1VFZA 1VFVA 2PG2A 4ZHIA 3B6UA 4PJMA 2ZFMA 4BN2A 4E7SA 4BBGA 3K3BA 3BFNA 1F9WA 2Q2YA 2FL2A 4GKQA 4A28A 1MKJA 3H4SA 4HNAK 1MMGA 3COBA 1VOMA 2KINA 4PFOA 1RY6A 3KENA 1D1CA 2FKYA 4A50A 2MYSA 1T5CA 3GBJA 3WRDA 4A1ZA 3CJOA 2ZFKA 4A14A 2FMEA 1SDMA 2X51A 4ETPB 5LT0A 1N6MA 2XT3A 4UBFA 2X7DA 4ZCAA 4PJLA 3ZCWA 2X7CA 5HLEA 2Y65A 5LT2A 5GSZA 4A5YA 4GKRA 3PXNA 4AP0A 3CNZA 1D0ZA 3ZFCA 1BR1A 5LT3A 1LKXA 2G1QA 2Q2ZA 4BXNA 4ANJA 2GM1A 1VFXA 1YRSA 2X2RA 2ZFLA 4PJNA 4Y05A 5LT1A 3NWNA 2UYIA 4LNUK 2X7EA 1V8KA 3U06A
chains in the Genus database with same CATH topology
1LVKA 2VASA 2FL6A 2V26A 1MNEA 4B7BA 4PJJA 1CZ7A 1MMNA 2XAEA 3LREA 5LT4A 1D1AA 1D1BA 2Y5WA 2ZFIA 1BG2A 4PK4A 4ETPA 1F9TA 3T0QA 2NCDA 2UYMA 3L1CA 2VVGA 1F9VA 1BR2A 3HQDA 2IEHA 1BR4A 2HEHA 1MMDA 3DC4A 1F9UA 4PFPA 4E7ZA 1FMWA 4A51A 1D0XA 1V8JA 4FRZA 1Q0BA 1FMVA 1I5SA 1MMAA 4AS7A 3KINA 1KK7A 3DCBA 3X2TA 3B6VA 1I6IA 4DBQA 3K5EA 1X88A 3KARA 1VFWA 3L9HA 4H1GA 2VB6A 1D0YA 1II6A 1G8XA 3ZFDA 1GOJA 2GRYA 2WOGA 2ZFJA 3WPNA 4DBRA 2OWMA 1VFZA 1VFVA 2PG2A 4ZHIA 3B6UA 4PJMA 2ZFMA 4BN2A 4E7SA 4BBGA 3K3BA 3BFNA 1F9WA 2Q2YA 2FL2A 4A28A 1MKJA 3H4SA 4HNAK 1MMGA 3COBA 1VOMA 2KINA 4PFOA 1RY6A 3KENA 1D1CA 2FKYA 4A50A 2MYSA 1T5CA 3GBJA 3WRDA 4A1ZA 3CJOA 2ZFKA 4A14A 2FMEA 1SDMA 2X51A 5LT0A 1N6MA 2XT3A 4UBFA 2X7DA 4ZCAA 4PJLA 3ZCWA 2X7CA 5HLEA 2Y65A 5LT2A 5GSZA 4A5YA 4GKRA 3PXNA 4AP0A 3CNZA 1D0ZA 3ZFCA 1BR1A 5LT3A 1LKXA 2G1QA 2Q2ZA 4BXNA 4ANJA 2GM1A 1VFXA 1YRSA 2X2RA 2ZFLA 4PJNA 4Y05A 5LT1A 3NWNA 2UYIA 4LNUK 2X7EA 1V8KA 3U06A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1LVK A;  2VAS A;  2FL6 A;  2V26 A;  1MNE A;  4B7B A;  4PJJ A;  1CZ7 A;  1MMN A;  2XAE A;  3LRE A;  5LT4 A;  1D1A A;  1D1B A;  2Y5W A;  2ZFI A;  1BG2 A;  4PK4 A;  4ETP A;  1F9T A;  3T0Q A;  2NCD A;  2UYM A;  3L1C A;  2VVG A;  1F9V A;  1BR2 A;  3HQD A;  2IEH A;  1BR4 A;  2HEH A;  1MMD A;  3DC4 A;  1F9U A;  4PFP A;  4E7Z A;  1FMW A;  4A51 A;  1D0X A;  1V8J A;  4FRZ A;  1Q0B A;  1FMV A;  1I5S A;  1MMA A;  4AS7 A;  3KIN A;  1KK7 A;  3DCB A;  3X2T A;  3B6V A;  1I6I A;  4DBQ A;  3K5E A;  1X88 A;  3KAR A;  1VFW A;  3L9H A;  4H1G A;  2VB6 A;  1D0Y A;  1II6 A;  1G8X A;  3ZFD A;  1GOJ A;  2GRY A;  2WOG A;  2ZFJ A;  3WPN A;  4DBR A;  2OWM A;  1VFZ A;  1VFV A;  2PG2 A;  4ZHI A;  3B6U A;  4PJM A;  2ZFM A;  4BN2 A;  4E7S A;  4BBG A;  3K3B A;  3BFN A;  1F9W A;  2Q2Y A;  2FL2 A;  4A28 A;  1MKJ A;  3H4S A;  4HNA K;  1MMG A;  3COB A;  1VOM A;  2KIN A;  4PFO A;  1RY6 A;  3KEN A;  1D1C A;  2FKY A;  4A50 A;  2MYS A;  1T5C A;  3GBJ A;  3WRD A;  4A1Z A;  3CJO A;  2ZFK A;  4A14 A;  2FME A;  1SDM A;  2X51 A;  5LT0 A;  1N6M A;  2XT3 A;  4UBF A;  2X7D A;  4ZCA A;  4PJL A;  3ZCW A;  2X7C A;  5HLE A;  2Y65 A;  5LT2 A;  5GSZ A;  4A5Y A;  4GKR A;  3PXN A;  4AP0 A;  3CNZ A;  1D0Z A;  3ZFC A;  1BR1 A;  5LT3 A;  1LKX A;  2G1Q A;  2Q2Z A;  4BXN A;  4ANJ A;  2GM1 A;  1VFX A;  1YRS A;  2X2R A;  2ZFL A;  4PJN A;  4Y05 A;  5LT1 A;  3NWN A;  2UYI A;  4LNU K;  2X7E A;  1V8K A;  3U06 A; 
#chains in the Genus database with same CATH topology
 1LVK A;  4GKP A;  2VAS A;  2FL6 A;  2V26 A;  1MNE A;  4B7B A;  4PJJ A;  1CZ7 A;  1MMN A;  2XAE A;  2O0A A;  3LRE A;  5LT4 A;  1D1A A;  1D1B A;  2Y5W A;  2ZFI A;  1BG2 A;  4PK4 A;  4ETP A;  1F9T A;  3T0Q A;  2NCD A;  2UYM A;  3L1C A;  2VVG A;  1F9V A;  1BR2 A;  3HQD A;  2IEH A;  1BR4 A;  2HEH A;  1MMD A;  3DC4 A;  1F9U A;  4PFP A;  4E7Z A;  1FMW A;  4A51 A;  1D0X A;  1V8J A;  4FRZ A;  1Q0B A;  1FMV A;  1I5S A;  1MMA A;  4AS7 A;  3KIN A;  1KK7 A;  3DCB A;  3X2T A;  3B6V A;  1I6I A;  4DBQ A;  3K5E A;  1X88 A;  3KAR A;  1VFW A;  3L9H A;  4H1G A;  2VB6 A;  1D0Y A;  1II6 A;  1G8X A;  3ZFD A;  1GOJ A;  2GRY A;  2WOG A;  2ZFJ A;  3WPN A;  4DBR A;  2OWM A;  1VFZ A;  1VFV A;  2PG2 A;  4ZHI A;  3B6U A;  4PJM A;  2ZFM A;  4BN2 A;  4E7S A;  4BBG A;  3K3B A;  3BFN A;  1F9W A;  2Q2Y A;  2FL2 A;  4GKQ A;  4A28 A;  1MKJ A;  3H4S A;  4HNA K;  1MMG A;  3COB A;  1VOM A;  2KIN A;  4PFO A;  1RY6 A;  3KEN A;  1D1C A;  2FKY A;  4A50 A;  2MYS A;  1T5C A;  3GBJ A;  3WRD A;  4A1Z A;  3CJO A;  2ZFK A;  4A14 A;  2FME A;  1SDM A;  2X51 A;  4ETP B;  5LT0 A;  1N6M A;  2XT3 A;  4UBF A;  2X7D A;  4ZCA A;  4PJL A;  3ZCW A;  2X7C A;  5HLE A;  2Y65 A;  5LT2 A;  5GSZ A;  4A5Y A;  4GKR A;  3PXN A;  4AP0 A;  3CNZ A;  1D0Z A;  3ZFC A;  1BR1 A;  5LT3 A;  1LKX A;  2G1Q A;  2Q2Z A;  4BXN A;  4ANJ A;  2GM1 A;  1VFX A;  1YRS A;  2X2R A;  2ZFL A;  4PJN A;  4Y05 A;  5LT1 A;  3NWN A;  2UYI A;  4LNU K;  2X7E A;  1V8K A;  3U06 A; 
#chains in the Genus database with same CATH homology
 1LVK A;  2VAS A;  2FL6 A;  2V26 A;  1MNE A;  4B7B A;  4PJJ A;  1CZ7 A;  1MMN A;  2XAE A;  3LRE A;  5LT4 A;  1D1A A;  1D1B A;  2Y5W A;  2ZFI A;  1BG2 A;  4PK4 A;  4ETP A;  1F9T A;  3T0Q A;  2NCD A;  2UYM A;  3L1C A;  2VVG A;  1F9V A;  1BR2 A;  3HQD A;  2IEH A;  1BR4 A;  2HEH A;  1MMD A;  3DC4 A;  1F9U A;  4PFP A;  4E7Z A;  1FMW A;  4A51 A;  1D0X A;  1V8J A;  4FRZ A;  1Q0B A;  1FMV A;  1I5S A;  1MMA A;  4AS7 A;  3KIN A;  1KK7 A;  3DCB A;  3X2T A;  3B6V A;  1I6I A;  4DBQ A;  3K5E A;  1X88 A;  3KAR A;  1VFW A;  3L9H A;  4H1G A;  2VB6 A;  1D0Y A;  1II6 A;  1G8X A;  3ZFD A;  1GOJ A;  2GRY A;  2WOG A;  2ZFJ A;  3WPN A;  4DBR A;  2OWM A;  1VFZ A;  1VFV A;  2PG2 A;  4ZHI A;  3B6U A;  4PJM A;  2ZFM A;  4BN2 A;  4E7S A;  4BBG A;  3K3B A;  3BFN A;  1F9W A;  2Q2Y A;  2FL2 A;  4A28 A;  1MKJ A;  3H4S A;  4HNA K;  1MMG A;  3COB A;  1VOM A;  2KIN A;  4PFO A;  1RY6 A;  3KEN A;  1D1C A;  2FKY A;  4A50 A;  2MYS A;  1T5C A;  3GBJ A;  3WRD A;  4A1Z A;  3CJO A;  2ZFK A;  4A14 A;  2FME A;  1SDM A;  2X51 A;  5LT0 A;  1N6M A;  2XT3 A;  4UBF A;  2X7D A;  4ZCA A;  4PJL A;  3ZCW A;  2X7C A;  5HLE A;  2Y65 A;  5LT2 A;  5GSZ A;  4A5Y A;  4GKR A;  3PXN A;  4AP0 A;  3CNZ A;  1D0Z A;  3ZFC A;  1BR1 A;  5LT3 A;  1LKX A;  2G1Q A;  2Q2Z A;  4BXN A;  4ANJ A;  2GM1 A;  1VFX A;  1YRS A;  2X2R A;  2ZFL A;  4PJN A;  4Y05 A;  5LT1 A;  3NWN A;  2UYI A;  4LNU K;  2X7E A;  1V8K A;  3U06 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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