4Y05A

Kif2c short loop2 construct
Total Genus 106
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
106
sequence length
356
structure length
330
Chain Sequence
b'FPNWEFARMIKEFRATLECHPLTMTDPIEEHRICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEKVDYLENQAFCFDFAFDETASNEVVYRFTAAPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSKGIYAMASADVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLNKKAKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTNSSRSHACFQIILRAKGRMHGKFSLVDLAGNERRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKEL'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Kinesin-like protein KIF2C
publication title New Insights into the Coupling between Microtubule Depolymerization and ATP Hydrolysis by Kinesin-13 Protein Kif2C.
pubmed doi rcsb
source organism Homo sapiens
molecule tags Transport protein
total genus 106
structure length 330
sequence length 356
ec nomenclature
pdb deposition date 2015-02-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00225 Kinesin Kinesin motor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.850.10 Alpha Beta 3-Layer(aba) Sandwich Kinesin Kinesin motor domain 4y05A00
1D1CA 1Q0BA 4Y05A 3ZFDA 1V8KA 5LT1A 2X51A 5LT0A 3DCBA 3K3BA 1VFVA 2G1QA 1D1BA 4DBRA 2VB6A 2V26A 3B6UA 3KENA 4H1GA 3HQDA 1T5CA 2FL6A 1GOJA 5GSZA 3T0QA 4BN2A 5HLEA 1F9WA 1I5SA 2UYIA 3WRDA 3KARA 1I6IA 1F9VA 2XAEA 4A28A 2FMEA 4LNUK 4PJJA 2Y65A 3B6VA 1F9TA 1D0YA 1VFXA 2NCDA 4AS7A 1VFZA 2VVGA 3COBA 2HEHA 2UYMA 1KK7A 1II6A 4PFOA 3X2TA 2X7CA 1G8XA 1LKXA 1VFWA 1YRSA 2Q2ZA 3GBJA 4ETPA 3NWNA 1SDMA 3H4SA 3CJOA 3WPNA 4AP0A 4B7BA 4A14A 1BR1A 1MMGA 1X88A 4PJNA 2X7EA 3DC4A 4BBGA 4FRZA 4A51A 1BR4A 4E7SA 3L1CA 1BR2A 4ZCAA 4A1ZA 1BG2A 2Q2YA 4PJMA 1CZ7A 3LREA 4GKRA 4DBQA 4ANJA 1D0XA 2ZFJA 4E7ZA 1FMVA 2ZFMA 4PJLA 2PG2A 4UBFA 1FMWA 4PFPA 3KINA 1VOMA 3ZFCA 1MMDA 3BFNA 1MKJA 2XT3A 1F9UA 4HNAK 2MYSA 1MMNA 2VASA 4A5YA 4BXNA 3K5EA 1D1AA 4PK4A 2ZFIA 2GRYA 2Y5WA 1D0ZA 2X2RA 1V8JA 2ZFLA 2KINA 2WOGA 2FL2A 2FKYA 2GM1A 3CNZA 1MNEA 3L9HA 4ZHIA 1MMAA 1RY6A 2ZFKA 3U06A 3PXNA 2X7DA 3ZCWA 5LT4A 4A50A 1N6MA 5LT3A 2IEHA 5LT2A 2OWMA 1LVKA
chains in the Genus database with same CATH superfamily
1D1CA 1Q0BA 4Y05A 3ZFDA 1V8KA 5LT1A 2X51A 5LT0A 3DCBA 3K3BA 1VFVA 2G1QA 1D1BA 4DBRA 2VB6A 2V26A 3B6UA 3KENA 4H1GA 3HQDA 1T5CA 2FL6A 1GOJA 5GSZA 3T0QA 4BN2A 5HLEA 1F9WA 1I5SA 2UYIA 4GKQA 3WRDA 3KARA 1I6IA 1F9VA 2XAEA 4A28A 2FMEA 4LNUK 4PJJA 2Y65A 3B6VA 1F9TA 1D0YA 1VFXA 2NCDA 4ETPB 4AS7A 1VFZA 2VVGA 3COBA 2HEHA 2UYMA 1KK7A 1II6A 4PFOA 3X2TA 2X7CA 1G8XA 1LKXA 1VFWA 1YRSA 2Q2ZA 3GBJA 4ETPA 3NWNA 1SDMA 3H4SA 3CJOA 3WPNA 4AP0A 4B7BA 4A14A 1BR1A 1MMGA 1X88A 4PJNA 2X7EA 3DC4A 4BBGA 4FRZA 4A51A 1BR4A 4E7SA 3L1CA 1BR2A 4ZCAA 4A1ZA 1BG2A 2Q2YA 4PJMA 1CZ7A 3LREA 4GKRA 4DBQA 4ANJA 1D0XA 2ZFJA 4E7ZA 1FMVA 2ZFMA 4PJLA 2PG2A 4UBFA 1FMWA 4PFPA 3KINA 1VOMA 3ZFCA 1MMDA 3BFNA 1MKJA 2XT3A 1F9UA 4HNAK 2MYSA 1MMNA 2VASA 2O0AA 4A5YA 4GKPA 4BXNA 3K5EA 1D1AA 4PK4A 2ZFIA 2GRYA 2Y5WA 1D0ZA 2X2RA 1V8JA 2ZFLA 2KINA 2WOGA 2FL2A 2FKYA 2GM1A 3CNZA 1MNEA 3L9HA 4ZHIA 1MMAA 1RY6A 2ZFKA 3U06A 3PXNA 2X7DA 3ZCWA 5LT4A 4A50A 1N6MA 5LT3A 2IEHA 5LT2A 2OWMA 1LVKA
chains in the Genus database with same CATH topology
1D1CA 1Q0BA 4Y05A 3ZFDA 1V8KA 5LT1A 2X51A 5LT0A 3DCBA 3K3BA 1VFVA 2G1QA 1D1BA 4DBRA 2VB6A 2V26A 3B6UA 3KENA 4H1GA 3HQDA 1T5CA 2FL6A 1GOJA 5GSZA 3T0QA 4BN2A 5HLEA 1F9WA 1I5SA 2UYIA 3WRDA 3KARA 1I6IA 1F9VA 2XAEA 4A28A 2FMEA 4LNUK 4PJJA 2Y65A 3B6VA 1F9TA 1D0YA 1VFXA 2NCDA 4AS7A 1VFZA 2VVGA 3COBA 2HEHA 2UYMA 1KK7A 1II6A 4PFOA 3X2TA 2X7CA 1G8XA 1LKXA 1VFWA 1YRSA 2Q2ZA 3GBJA 4ETPA 3NWNA 1SDMA 3H4SA 3CJOA 3WPNA 4AP0A 4B7BA 4A14A 1BR1A 1MMGA 1X88A 4PJNA 2X7EA 3DC4A 4BBGA 4FRZA 4A51A 1BR4A 4E7SA 3L1CA 1BR2A 4ZCAA 4A1ZA 1BG2A 2Q2YA 4PJMA 1CZ7A 3LREA 4GKRA 4DBQA 4ANJA 1D0XA 2ZFJA 4E7ZA 1FMVA 2ZFMA 4PJLA 2PG2A 4UBFA 1FMWA 4PFPA 3KINA 1VOMA 3ZFCA 1MMDA 3BFNA 1MKJA 2XT3A 1F9UA 4HNAK 2MYSA 1MMNA 2VASA 4A5YA 4BXNA 3K5EA 1D1AA 4PK4A 2ZFIA 2GRYA 2Y5WA 1D0ZA 2X2RA 1V8JA 2ZFLA 2KINA 2WOGA 2FL2A 2FKYA 2GM1A 3CNZA 1MNEA 3L9HA 4ZHIA 1MMAA 1RY6A 2ZFKA 3U06A 3PXNA 2X7DA 3ZCWA 5LT4A 4A50A 1N6MA 5LT3A 2IEHA 5LT2A 2OWMA 1LVKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1D1C A;  1Q0B A;  4Y05 A;  3ZFD A;  1V8K A;  5LT1 A;  2X51 A;  5LT0 A;  3DCB A;  3K3B A;  1VFV A;  2G1Q A;  1D1B A;  4DBR A;  2VB6 A;  2V26 A;  3B6U A;  3KEN A;  4H1G A;  3HQD A;  1T5C A;  2FL6 A;  1GOJ A;  5GSZ A;  3T0Q A;  4BN2 A;  5HLE A;  1F9W A;  1I5S A;  2UYI A;  3WRD A;  3KAR A;  1I6I A;  1F9V A;  2XAE A;  4A28 A;  2FME A;  4LNU K;  4PJJ A;  2Y65 A;  3B6V A;  1F9T A;  1D0Y A;  1VFX A;  2NCD A;  4AS7 A;  1VFZ A;  2VVG A;  3COB A;  2HEH A;  2UYM A;  1KK7 A;  1II6 A;  4PFO A;  3X2T A;  2X7C A;  1G8X A;  1LKX A;  1VFW A;  1YRS A;  2Q2Z A;  3GBJ A;  4ETP A;  3NWN A;  1SDM A;  3H4S A;  3CJO A;  3WPN A;  4AP0 A;  4B7B A;  4A14 A;  1BR1 A;  1MMG A;  1X88 A;  4PJN A;  2X7E A;  3DC4 A;  4BBG A;  4FRZ A;  4A51 A;  1BR4 A;  4E7S A;  3L1C A;  1BR2 A;  4ZCA A;  4A1Z A;  1BG2 A;  2Q2Y A;  4PJM A;  1CZ7 A;  3LRE A;  4GKR A;  4DBQ A;  4ANJ A;  1D0X A;  2ZFJ A;  4E7Z A;  1FMV A;  2ZFM A;  4PJL A;  2PG2 A;  4UBF A;  1FMW A;  4PFP A;  3KIN A;  1VOM A;  3ZFC A;  1MMD A;  3BFN A;  1MKJ A;  2XT3 A;  1F9U A;  4HNA K;  2MYS A;  1MMN A;  2VAS A;  4A5Y A;  4BXN A;  3K5E A;  1D1A A;  4PK4 A;  2ZFI A;  2GRY A;  2Y5W A;  1D0Z A;  2X2R A;  1V8J A;  2ZFL A;  2KIN A;  2WOG A;  2FL2 A;  2FKY A;  2GM1 A;  3CNZ A;  1MNE A;  3L9H A;  4ZHI A;  1MMA A;  1RY6 A;  2ZFK A;  3U06 A;  3PXN A;  2X7D A;  3ZCW A;  5LT4 A;  4A50 A;  1N6M A;  5LT3 A;  2IEH A;  5LT2 A;  2OWM A;  1LVK A; 
#chains in the Genus database with same CATH topology
 1D1C A;  1Q0B A;  4Y05 A;  3ZFD A;  1V8K A;  5LT1 A;  2X51 A;  5LT0 A;  3DCB A;  3K3B A;  1VFV A;  2G1Q A;  1D1B A;  4DBR A;  2VB6 A;  2V26 A;  3B6U A;  3KEN A;  4H1G A;  3HQD A;  1T5C A;  2FL6 A;  1GOJ A;  5GSZ A;  3T0Q A;  4BN2 A;  5HLE A;  1F9W A;  1I5S A;  2UYI A;  4GKQ A;  3WRD A;  3KAR A;  1I6I A;  1F9V A;  2XAE A;  4A28 A;  2FME A;  4LNU K;  4PJJ A;  2Y65 A;  3B6V A;  1F9T A;  1D0Y A;  1VFX A;  2NCD A;  4ETP B;  4AS7 A;  1VFZ A;  2VVG A;  3COB A;  2HEH A;  2UYM A;  1KK7 A;  1II6 A;  4PFO A;  3X2T A;  2X7C A;  1G8X A;  1LKX A;  1VFW A;  1YRS A;  2Q2Z A;  3GBJ A;  4ETP A;  3NWN A;  1SDM A;  3H4S A;  3CJO A;  3WPN A;  4AP0 A;  4B7B A;  4A14 A;  1BR1 A;  1MMG A;  1X88 A;  4PJN A;  2X7E A;  3DC4 A;  4BBG A;  4FRZ A;  4A51 A;  1BR4 A;  4E7S A;  3L1C A;  1BR2 A;  4ZCA A;  4A1Z A;  1BG2 A;  2Q2Y A;  4PJM A;  1CZ7 A;  3LRE A;  4GKR A;  4DBQ A;  4ANJ A;  1D0X A;  2ZFJ A;  4E7Z A;  1FMV A;  2ZFM A;  4PJL A;  2PG2 A;  4UBF A;  1FMW A;  4PFP A;  3KIN A;  1VOM A;  3ZFC A;  1MMD A;  3BFN A;  1MKJ A;  2XT3 A;  1F9U A;  4HNA K;  2MYS A;  1MMN A;  2VAS A;  2O0A A;  4A5Y A;  4GKP A;  4BXN A;  3K5E A;  1D1A A;  4PK4 A;  2ZFI A;  2GRY A;  2Y5W A;  1D0Z A;  2X2R A;  1V8J A;  2ZFL A;  2KIN A;  2WOG A;  2FL2 A;  2FKY A;  2GM1 A;  3CNZ A;  1MNE A;  3L9H A;  4ZHI A;  1MMA A;  1RY6 A;  2ZFK A;  3U06 A;  3PXN A;  2X7D A;  3ZCW A;  5LT4 A;  4A50 A;  1N6M A;  5LT3 A;  2IEH A;  5LT2 A;  2OWM A;  1LVK A; 
#chains in the Genus database with same CATH homology
 1D1C A;  1Q0B A;  4Y05 A;  3ZFD A;  1V8K A;  5LT1 A;  2X51 A;  5LT0 A;  3DCB A;  3K3B A;  1VFV A;  2G1Q A;  1D1B A;  4DBR A;  2VB6 A;  2V26 A;  3B6U A;  3KEN A;  4H1G A;  3HQD A;  1T5C A;  2FL6 A;  1GOJ A;  5GSZ A;  3T0Q A;  4BN2 A;  5HLE A;  1F9W A;  1I5S A;  2UYI A;  3WRD A;  3KAR A;  1I6I A;  1F9V A;  2XAE A;  4A28 A;  2FME A;  4LNU K;  4PJJ A;  2Y65 A;  3B6V A;  1F9T A;  1D0Y A;  1VFX A;  2NCD A;  4AS7 A;  1VFZ A;  2VVG A;  3COB A;  2HEH A;  2UYM A;  1KK7 A;  1II6 A;  4PFO A;  3X2T A;  2X7C A;  1G8X A;  1LKX A;  1VFW A;  1YRS A;  2Q2Z A;  3GBJ A;  4ETP A;  3NWN A;  1SDM A;  3H4S A;  3CJO A;  3WPN A;  4AP0 A;  4B7B A;  4A14 A;  1BR1 A;  1MMG A;  1X88 A;  4PJN A;  2X7E A;  3DC4 A;  4BBG A;  4FRZ A;  4A51 A;  1BR4 A;  4E7S A;  3L1C A;  1BR2 A;  4ZCA A;  4A1Z A;  1BG2 A;  2Q2Y A;  4PJM A;  1CZ7 A;  3LRE A;  4GKR A;  4DBQ A;  4ANJ A;  1D0X A;  2ZFJ A;  4E7Z A;  1FMV A;  2ZFM A;  4PJL A;  2PG2 A;  4UBF A;  1FMW A;  4PFP A;  3KIN A;  1VOM A;  3ZFC A;  1MMD A;  3BFN A;  1MKJ A;  2XT3 A;  1F9U A;  4HNA K;  2MYS A;  1MMN A;  2VAS A;  4A5Y A;  4BXN A;  3K5E A;  1D1A A;  4PK4 A;  2ZFI A;  2GRY A;  2Y5W A;  1D0Z A;  2X2R A;  1V8J A;  2ZFL A;  2KIN A;  2WOG A;  2FL2 A;  2FKY A;  2GM1 A;  3CNZ A;  1MNE A;  3L9H A;  4ZHI A;  1MMA A;  1RY6 A;  2ZFK A;  3U06 A;  3PXN A;  2X7D A;  3ZCW A;  5LT4 A;  4A50 A;  1N6M A;  5LT3 A;  2IEH A;  5LT2 A;  2OWM A;  1LVK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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