4Y05A

Kif2c short loop2 construct
Total Genus 106
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
106
sequence length
356
structure length
330
Chain Sequence
FPNWEFARMIKEFRATLECHPLTMTDPIEEHRICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEKVDYLENQAFCFDFAFDETASNEVVYRFTAAPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSKGIYAMASADVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLNKKAKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTNSSRSHACFQIILRAKGRMHGKFSLVDLAGNERRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKEL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Kinesin-like protein KIF2C
publication title New Insights into the Coupling between Microtubule Depolymerization and ATP Hydrolysis by Kinesin-13 Protein Kif2C.
pubmed doi rcsb
source organism Homo sapiens
molecule tags Transport protein
total genus 106
structure length 330
sequence length 356
ec nomenclature
pdb deposition date 2015-02-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00225 Kinesin Kinesin motor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.850.10 Alpha Beta 3-Layer(aba) Sandwich Kinesin Kinesin motor domain 4y05A00
5LT3A 1LKXA 3U06A 2VASA 2X7DA 3L9HA 2X7EA 1F9WA 2WOGA 1MMGA 1V8JA 3WPNA 1II6A 4AS7A 5LT1A 1BR2A 1KK7A 4ZCAA 2ZFLA 4PFPA 4B7BA 2ZFJA 4A5YA 3K5EA 4ZHIA 5GSZA 3K3BA 3COBA 4PFOA 1I6IA 4Y05A 3NWNA 1F9UA 1D1BA 2Y5WA 3CJOA 4H1GA 3DCBA 4A51A 2VVGA 1F9TA 4ANJA 4A1ZA 1YRSA 2FL2A 1CZ7A 2XAEA 1RY6A 2ZFIA 2MYSA 2XT3A 2FKYA 1D0XA 1G8XA 5LT2A 2GM1A 4BBGA 1MMNA 3GBJA 3HQDA 4PJLA 1VFXA 4PJMA 4E7ZA 5HLEA 1V8KA 3CNZA 2Q2YA 4PJJA 3PXNA 3B6VA 4A50A 4PJNA 2NCDA 2G1QA 1MKJA 4DBQA 2X2RA 1D1CA 2IEHA 1MMDA 2Y65A 3T0QA 4FRZA 3L1CA 5LT0A 2FMEA 1F9VA 4PK4A 4A14A 1BG2A 1Q0BA 2Q2ZA 3KENA 1T5CA 3KARA 2ZFKA 1VFZA 4E7SA 2OWMA 1D0YA 3LREA 2PG2A 4BXNA 1BR4A 3ZFDA 1VOMA 2X51A 2ZFMA 4UBFA 2X7CA 1FMWA 1I5SA 3DC4A 3KINA 4HNAK 4BN2A 2KINA 4ETPA 4GKRA 2UYIA 1D1AA 3ZFCA 1VFVA 4LNUK 1N6MA 3BFNA 1MMAA 3ZCWA 1GOJA 1LVKA 1X88A 2FL6A 2VB6A 1FMVA 3WRDA 5LT4A 1BR1A 4AP0A 1D0ZA 1SDMA 1VFWA 2UYMA 2V26A 2GRYA 3B6UA 4DBRA 2HEHA 1MNEA 3X2TA 4A28A 3H4SA
chains in the Genus database with same CATH superfamily
5LT3A 1LKXA 3U06A 2VASA 2X7DA 3L9HA 2X7EA 1F9WA 2WOGA 1MMGA 1V8JA 3WPNA 1II6A 4AS7A 5LT1A 1BR2A 1KK7A 4ZCAA 2ZFLA 2O0AA 4PFPA 4B7BA 2ZFJA 4A5YA 3K5EA 4ZHIA 5GSZA 3K3BA 3COBA 4PFOA 1I6IA 4Y05A 3NWNA 1F9UA 1D1BA 2Y5WA 3CJOA 4H1GA 3DCBA 4A51A 2VVGA 1F9TA 4ANJA 4A1ZA 1YRSA 2FL2A 1CZ7A 2XAEA 1RY6A 2ZFIA 2MYSA 2XT3A 2FKYA 1D0XA 1G8XA 5LT2A 2GM1A 4BBGA 1MMNA 3GBJA 3HQDA 4PJLA 1VFXA 4PJMA 4E7ZA 5HLEA 1V8KA 3CNZA 2Q2YA 4PJJA 3PXNA 3B6VA 4A50A 4PJNA 4ETPB 2NCDA 2G1QA 1MKJA 4GKPA 4DBQA 2X2RA 1D1CA 2IEHA 1MMDA 2Y65A 3T0QA 4FRZA 3L1CA 5LT0A 2FMEA 1F9VA 4PK4A 4A14A 1BG2A 1Q0BA 2Q2ZA 3KENA 1T5CA 3KARA 2ZFKA 1VFZA 4E7SA 2OWMA 1D0YA 3LREA 2PG2A 4BXNA 1BR4A 3ZFDA 1VOMA 2X51A 2ZFMA 4UBFA 2X7CA 1FMWA 1I5SA 3DC4A 3KINA 4HNAK 4BN2A 2KINA 4ETPA 4GKRA 2UYIA 1D1AA 3ZFCA 1VFVA 4LNUK 1N6MA 3BFNA 1MMAA 3ZCWA 1GOJA 1LVKA 1X88A 2FL6A 2VB6A 1FMVA 3WRDA 5LT4A 1BR1A 4AP0A 1D0ZA 1SDMA 1VFWA 2UYMA 2V26A 2GRYA 3B6UA 4DBRA 2HEHA 1MNEA 3X2TA 4GKQA 4A28A 3H4SA
chains in the Genus database with same CATH topology
5LT3A 1LKXA 3U06A 2VASA 2X7DA 3L9HA 2X7EA 1F9WA 2WOGA 1MMGA 1V8JA 3WPNA 1II6A 4AS7A 5LT1A 1BR2A 1KK7A 4ZCAA 2ZFLA 4PFPA 4B7BA 2ZFJA 4A5YA 3K5EA 4ZHIA 5GSZA 3K3BA 3COBA 4PFOA 1I6IA 4Y05A 3NWNA 1F9UA 1D1BA 2Y5WA 3CJOA 4H1GA 3DCBA 4A51A 2VVGA 1F9TA 4ANJA 4A1ZA 1YRSA 2FL2A 1CZ7A 2XAEA 1RY6A 2ZFIA 2MYSA 2XT3A 2FKYA 1D0XA 1G8XA 5LT2A 2GM1A 4BBGA 1MMNA 3GBJA 3HQDA 4PJLA 1VFXA 4PJMA 4E7ZA 5HLEA 1V8KA 3CNZA 2Q2YA 4PJJA 3PXNA 3B6VA 4A50A 4PJNA 2NCDA 2G1QA 1MKJA 4DBQA 2X2RA 1D1CA 2IEHA 1MMDA 2Y65A 3T0QA 4FRZA 3L1CA 5LT0A 2FMEA 1F9VA 4PK4A 4A14A 1BG2A 1Q0BA 2Q2ZA 3KENA 1T5CA 3KARA 2ZFKA 1VFZA 4E7SA 2OWMA 1D0YA 3LREA 2PG2A 4BXNA 1BR4A 3ZFDA 1VOMA 2X51A 2ZFMA 4UBFA 2X7CA 1FMWA 1I5SA 3DC4A 3KINA 4HNAK 4BN2A 2KINA 4ETPA 4GKRA 2UYIA 1D1AA 3ZFCA 1VFVA 4LNUK 1N6MA 3BFNA 1MMAA 3ZCWA 1GOJA 1LVKA 1X88A 2FL6A 2VB6A 1FMVA 3WRDA 5LT4A 1BR1A 4AP0A 1D0ZA 1SDMA 1VFWA 2UYMA 2V26A 2GRYA 3B6UA 4DBRA 2HEHA 1MNEA 3X2TA 4A28A 3H4SA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5LT3 A;  1LKX A;  3U06 A;  2VAS A;  2X7D A;  3L9H A;  2X7E A;  1F9W A;  2WOG A;  1MMG A;  1V8J A;  3WPN A;  1II6 A;  4AS7 A;  5LT1 A;  1BR2 A;  1KK7 A;  4ZCA A;  2ZFL A;  4PFP A;  4B7B A;  2ZFJ A;  4A5Y A;  3K5E A;  4ZHI A;  5GSZ A;  3K3B A;  3COB A;  4PFO A;  1I6I A;  4Y05 A;  3NWN A;  1F9U A;  1D1B A;  2Y5W A;  3CJO A;  4H1G A;  3DCB A;  4A51 A;  2VVG A;  1F9T A;  4ANJ A;  4A1Z A;  1YRS A;  2FL2 A;  1CZ7 A;  2XAE A;  1RY6 A;  2ZFI A;  2MYS A;  2XT3 A;  2FKY A;  1D0X A;  1G8X A;  5LT2 A;  2GM1 A;  4BBG A;  1MMN A;  3GBJ A;  3HQD A;  4PJL A;  1VFX A;  4PJM A;  4E7Z A;  5HLE A;  1V8K A;  3CNZ A;  2Q2Y A;  4PJJ A;  3PXN A;  3B6V A;  4A50 A;  4PJN A;  2NCD A;  2G1Q A;  1MKJ A;  4DBQ A;  2X2R A;  1D1C A;  2IEH A;  1MMD A;  2Y65 A;  3T0Q A;  4FRZ A;  3L1C A;  5LT0 A;  2FME A;  1F9V A;  4PK4 A;  4A14 A;  1BG2 A;  1Q0B A;  2Q2Z A;  3KEN A;  1T5C A;  3KAR A;  2ZFK A;  1VFZ A;  4E7S A;  2OWM A;  1D0Y A;  3LRE A;  2PG2 A;  4BXN A;  1BR4 A;  3ZFD A;  1VOM A;  2X51 A;  2ZFM A;  4UBF A;  2X7C A;  1FMW A;  1I5S A;  3DC4 A;  3KIN A;  4HNA K;  4BN2 A;  2KIN A;  4ETP A;  4GKR A;  2UYI A;  1D1A A;  3ZFC A;  1VFV A;  4LNU K;  1N6M A;  3BFN A;  1MMA A;  3ZCW A;  1GOJ A;  1LVK A;  1X88 A;  2FL6 A;  2VB6 A;  1FMV A;  3WRD A;  5LT4 A;  1BR1 A;  4AP0 A;  1D0Z A;  1SDM A;  1VFW A;  2UYM A;  2V26 A;  2GRY A;  3B6U A;  4DBR A;  2HEH A;  1MNE A;  3X2T A;  4A28 A;  3H4S A; 
#chains in the Genus database with same CATH topology
 5LT3 A;  1LKX A;  3U06 A;  2VAS A;  2X7D A;  3L9H A;  2X7E A;  1F9W A;  2WOG A;  1MMG A;  1V8J A;  3WPN A;  1II6 A;  4AS7 A;  5LT1 A;  1BR2 A;  1KK7 A;  4ZCA A;  2ZFL A;  2O0A A;  4PFP A;  4B7B A;  2ZFJ A;  4A5Y A;  3K5E A;  4ZHI A;  5GSZ A;  3K3B A;  3COB A;  4PFO A;  1I6I A;  4Y05 A;  3NWN A;  1F9U A;  1D1B A;  2Y5W A;  3CJO A;  4H1G A;  3DCB A;  4A51 A;  2VVG A;  1F9T A;  4ANJ A;  4A1Z A;  1YRS A;  2FL2 A;  1CZ7 A;  2XAE A;  1RY6 A;  2ZFI A;  2MYS A;  2XT3 A;  2FKY A;  1D0X A;  1G8X A;  5LT2 A;  2GM1 A;  4BBG A;  1MMN A;  3GBJ A;  3HQD A;  4PJL A;  1VFX A;  4PJM A;  4E7Z A;  5HLE A;  1V8K A;  3CNZ A;  2Q2Y A;  4PJJ A;  3PXN A;  3B6V A;  4A50 A;  4PJN A;  4ETP B;  2NCD A;  2G1Q A;  1MKJ A;  4GKP A;  4DBQ A;  2X2R A;  1D1C A;  2IEH A;  1MMD A;  2Y65 A;  3T0Q A;  4FRZ A;  3L1C A;  5LT0 A;  2FME A;  1F9V A;  4PK4 A;  4A14 A;  1BG2 A;  1Q0B A;  2Q2Z A;  3KEN A;  1T5C A;  3KAR A;  2ZFK A;  1VFZ A;  4E7S A;  2OWM A;  1D0Y A;  3LRE A;  2PG2 A;  4BXN A;  1BR4 A;  3ZFD A;  1VOM A;  2X51 A;  2ZFM A;  4UBF A;  2X7C A;  1FMW A;  1I5S A;  3DC4 A;  3KIN A;  4HNA K;  4BN2 A;  2KIN A;  4ETP A;  4GKR A;  2UYI A;  1D1A A;  3ZFC A;  1VFV A;  4LNU K;  1N6M A;  3BFN A;  1MMA A;  3ZCW A;  1GOJ A;  1LVK A;  1X88 A;  2FL6 A;  2VB6 A;  1FMV A;  3WRD A;  5LT4 A;  1BR1 A;  4AP0 A;  1D0Z A;  1SDM A;  1VFW A;  2UYM A;  2V26 A;  2GRY A;  3B6U A;  4DBR A;  2HEH A;  1MNE A;  3X2T A;  4GKQ A;  4A28 A;  3H4S A; 
#chains in the Genus database with same CATH homology
 5LT3 A;  1LKX A;  3U06 A;  2VAS A;  2X7D A;  3L9H A;  2X7E A;  1F9W A;  2WOG A;  1MMG A;  1V8J A;  3WPN A;  1II6 A;  4AS7 A;  5LT1 A;  1BR2 A;  1KK7 A;  4ZCA A;  2ZFL A;  4PFP A;  4B7B A;  2ZFJ A;  4A5Y A;  3K5E A;  4ZHI A;  5GSZ A;  3K3B A;  3COB A;  4PFO A;  1I6I A;  4Y05 A;  3NWN A;  1F9U A;  1D1B A;  2Y5W A;  3CJO A;  4H1G A;  3DCB A;  4A51 A;  2VVG A;  1F9T A;  4ANJ A;  4A1Z A;  1YRS A;  2FL2 A;  1CZ7 A;  2XAE A;  1RY6 A;  2ZFI A;  2MYS A;  2XT3 A;  2FKY A;  1D0X A;  1G8X A;  5LT2 A;  2GM1 A;  4BBG A;  1MMN A;  3GBJ A;  3HQD A;  4PJL A;  1VFX A;  4PJM A;  4E7Z A;  5HLE A;  1V8K A;  3CNZ A;  2Q2Y A;  4PJJ A;  3PXN A;  3B6V A;  4A50 A;  4PJN A;  2NCD A;  2G1Q A;  1MKJ A;  4DBQ A;  2X2R A;  1D1C A;  2IEH A;  1MMD A;  2Y65 A;  3T0Q A;  4FRZ A;  3L1C A;  5LT0 A;  2FME A;  1F9V A;  4PK4 A;  4A14 A;  1BG2 A;  1Q0B A;  2Q2Z A;  3KEN A;  1T5C A;  3KAR A;  2ZFK A;  1VFZ A;  4E7S A;  2OWM A;  1D0Y A;  3LRE A;  2PG2 A;  4BXN A;  1BR4 A;  3ZFD A;  1VOM A;  2X51 A;  2ZFM A;  4UBF A;  2X7C A;  1FMW A;  1I5S A;  3DC4 A;  3KIN A;  4HNA K;  4BN2 A;  2KIN A;  4ETP A;  4GKR A;  2UYI A;  1D1A A;  3ZFC A;  1VFV A;  4LNU K;  1N6M A;  3BFN A;  1MMA A;  3ZCW A;  1GOJ A;  1LVK A;  1X88 A;  2FL6 A;  2VB6 A;  1FMV A;  3WRD A;  5LT4 A;  1BR1 A;  4AP0 A;  1D0Z A;  1SDM A;  1VFW A;  2UYM A;  2V26 A;  2GRY A;  3B6U A;  4DBR A;  2HEH A;  1MNE A;  3X2T A;  4A28 A;  3H4S A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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