1N6MA

Rotation of the stalk/neck and one head in a new crystal structure of the kinesin motor protein, ncd
Total Genus 125
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
125
sequence length
380
structure length
362
Chain Sequence
MHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRASSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSESPKTETKNIKRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Claret segregational protein
publication title Rotation of the stalk/neck and one head in a new crystal structure of the kinesin motor protein, Ncd
pubmed doi rcsb
source organism Drosophila melanogaster
molecule tags Cell cycle
total genus 125
structure length 362
sequence length 380
chains with identical sequence B
ec nomenclature
pdb deposition date 2002-11-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00225 Kinesin Kinesin motor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.850.10 Alpha Beta 3-Layer(aba) Sandwich Kinesin Kinesin motor domain 1n6mA00
1MMAA 3L9HA 3NWNA 5LT3A 3ZCWA 2FL2A 2G1QA 1VFVA 1MNEA 3DCBA 5LT2A 1D1CA 1VFWA 1F9TA 3WPNA 1D1AA 4H1GA 1LVKA 4A50A 1BR4A 1F9UA 2FMEA 1FMVA 4ZHIA 4A1ZA 2FKYA 4HNAK 1VOMA 3ZFCA 1T5CA 2VASA 3CJOA 4BXNA 1D0YA 4A14A 2IEHA 4BN2A 5LT0A 1BG2A 4B7BA 2X51A 1MMDA 2X7DA 4DBRA 4E7SA 5LT4A 1YRSA 3CNZA 1SDMA 2Y65A 1G8XA 2Y5WA 4PK4A 1F9WA 4A51A 3HQDA 2NCDA 2FL6A 2XAEA 3COBA 1X88A 2HEHA 1F9VA 2ZFIA 4FRZA 4BBGA 2X7CA 4PJLA 1II6A 4DBQA 2UYIA 1Q0BA 1D0XA 1V8KA 1BR1A 3LREA 1D1BA 1D0ZA 1MMNA 3T0QA 4PJNA 3B6UA 3PXNA 3K5EA 2ZFLA 1VFXA 1MMGA 1FMWA 3KENA 2PG2A 2VVGA 2Q2ZA 2ZFMA 3DC4A 2GM1A 3GBJA 4AS7A 3U06A 2ZFJA 3BFNA 1GOJA 5HLEA 4AP0A 4ANJA 3X2TA 4LNUK 1BR2A 3KINA 4Y05A 3L1CA 1I6IA 2Q2YA 5GSZA 2WOGA 4PFPA 2UYMA 4GKRA 1KK7A 3K3BA 3B6VA 4PFOA 2VB6A 1CZ7A 4PJMA 4PJJA 3KARA 3ZFDA 5LT1A 1VFZA 2OWMA 2XT3A 1I5SA 1N6MA 4UBFA 3H4SA 4E7ZA 2ZFKA 2GRYA 4A5YA 3WRDA 2MYSA 4ZCAA 2X2RA 2V26A 4A28A 1LKXA 2X7EA 4ETPA 1RY6A 1MKJA 2KINA 1V8JA
chains in the Genus database with same CATH superfamily
1MMAA 3L9HA 3NWNA 5LT3A 3ZCWA 2FL2A 2G1QA 1VFVA 1MNEA 3DCBA 5LT2A 1D1CA 1VFWA 1F9TA 3WPNA 1D1AA 4H1GA 1LVKA 2O0AA 4GKPA 1BR4A 4GKQA 4A50A 1F9UA 2FMEA 1FMVA 4ZHIA 4A1ZA 2FKYA 4HNAK 1VOMA 3ZFCA 1T5CA 2VASA 3CJOA 4BXNA 1D0YA 4A14A 2IEHA 4BN2A 5LT0A 1BG2A 4B7BA 2X51A 1MMDA 2X7DA 4DBRA 4E7SA 5LT4A 1YRSA 3CNZA 1SDMA 2Y65A 1G8XA 2Y5WA 4PK4A 1F9WA 4A51A 3HQDA 2NCDA 2FL6A 2XAEA 3COBA 1X88A 2HEHA 1F9VA 2ZFIA 4FRZA 4BBGA 2X7CA 4PJLA 1II6A 4DBQA 2UYIA 1Q0BA 1D0XA 1V8KA 1BR1A 3LREA 1D1BA 1D0ZA 1MMNA 3T0QA 4PJNA 3B6UA 3PXNA 3K5EA 2ZFLA 1VFXA 1MMGA 1FMWA 3KENA 2PG2A 2VVGA 2Q2ZA 2ZFMA 3DC4A 2GM1A 3GBJA 4AS7A 3U06A 2ZFJA 3BFNA 1GOJA 5HLEA 4AP0A 4ANJA 3X2TA 4LNUK 1BR2A 3KINA 4Y05A 3L1CA 1I6IA 2Q2YA 5GSZA 2WOGA 4PFPA 2UYMA 4GKRA 1KK7A 3K3BA 3B6VA 4ETPB 4PFOA 2VB6A 1CZ7A 4PJMA 4PJJA 3KARA 3ZFDA 5LT1A 1VFZA 2OWMA 2XT3A 1I5SA 1N6MA 4UBFA 3H4SA 4E7ZA 2ZFKA 2GRYA 4A5YA 3WRDA 2MYSA 4ZCAA 2X2RA 2V26A 4A28A 1LKXA 2X7EA 4ETPA 1RY6A 1MKJA 2KINA 1V8JA
chains in the Genus database with same CATH topology
1MMAA 3L9HA 3NWNA 5LT3A 3ZCWA 2FL2A 2G1QA 1VFVA 1MNEA 3DCBA 5LT2A 1D1CA 1VFWA 1F9TA 3WPNA 1D1AA 4H1GA 1LVKA 4A50A 1BR4A 1F9UA 2FMEA 1FMVA 4ZHIA 4A1ZA 2FKYA 4HNAK 1VOMA 3ZFCA 1T5CA 2VASA 3CJOA 4BXNA 1D0YA 4A14A 2IEHA 4BN2A 5LT0A 1BG2A 4B7BA 2X51A 1MMDA 2X7DA 4DBRA 4E7SA 5LT4A 1YRSA 3CNZA 1SDMA 2Y65A 1G8XA 2Y5WA 4PK4A 1F9WA 4A51A 3HQDA 2NCDA 2FL6A 2XAEA 3COBA 1X88A 2HEHA 1F9VA 2ZFIA 4FRZA 4BBGA 2X7CA 4PJLA 1II6A 4DBQA 2UYIA 1Q0BA 1D0XA 1V8KA 1BR1A 3LREA 1D1BA 1D0ZA 1MMNA 3T0QA 4PJNA 3B6UA 3PXNA 3K5EA 2ZFLA 1VFXA 1MMGA 1FMWA 3KENA 2PG2A 2VVGA 2Q2ZA 2ZFMA 3DC4A 2GM1A 3GBJA 4AS7A 3U06A 2ZFJA 3BFNA 1GOJA 5HLEA 4AP0A 4ANJA 3X2TA 4LNUK 1BR2A 3KINA 4Y05A 3L1CA 1I6IA 2Q2YA 5GSZA 2WOGA 4PFPA 2UYMA 4GKRA 1KK7A 3K3BA 3B6VA 4PFOA 2VB6A 1CZ7A 4PJMA 4PJJA 3KARA 3ZFDA 5LT1A 1VFZA 2OWMA 2XT3A 1I5SA 1N6MA 4UBFA 3H4SA 4E7ZA 2ZFKA 2GRYA 4A5YA 3WRDA 2MYSA 4ZCAA 2X2RA 2V26A 4A28A 1LKXA 2X7EA 4ETPA 1RY6A 1MKJA 2KINA 1V8JA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MMA A;  3L9H A;  3NWN A;  5LT3 A;  3ZCW A;  2FL2 A;  2G1Q A;  1VFV A;  1MNE A;  3DCB A;  5LT2 A;  1D1C A;  1VFW A;  1F9T A;  3WPN A;  1D1A A;  4H1G A;  1LVK A;  4A50 A;  1BR4 A;  1F9U A;  2FME A;  1FMV A;  4ZHI A;  4A1Z A;  2FKY A;  4HNA K;  1VOM A;  3ZFC A;  1T5C A;  2VAS A;  3CJO A;  4BXN A;  1D0Y A;  4A14 A;  2IEH A;  4BN2 A;  5LT0 A;  1BG2 A;  4B7B A;  2X51 A;  1MMD A;  2X7D A;  4DBR A;  4E7S A;  5LT4 A;  1YRS A;  3CNZ A;  1SDM A;  2Y65 A;  1G8X A;  2Y5W A;  4PK4 A;  1F9W A;  4A51 A;  3HQD A;  2NCD A;  2FL6 A;  2XAE A;  3COB A;  1X88 A;  2HEH A;  1F9V A;  2ZFI A;  4FRZ A;  4BBG A;  2X7C A;  4PJL A;  1II6 A;  4DBQ A;  2UYI A;  1Q0B A;  1D0X A;  1V8K A;  1BR1 A;  3LRE A;  1D1B A;  1D0Z A;  1MMN A;  3T0Q A;  4PJN A;  3B6U A;  3PXN A;  3K5E A;  2ZFL A;  1VFX A;  1MMG A;  1FMW A;  3KEN A;  2PG2 A;  2VVG A;  2Q2Z A;  2ZFM A;  3DC4 A;  2GM1 A;  3GBJ A;  4AS7 A;  3U06 A;  2ZFJ A;  3BFN A;  1GOJ A;  5HLE A;  4AP0 A;  4ANJ A;  3X2T A;  4LNU K;  1BR2 A;  3KIN A;  4Y05 A;  3L1C A;  1I6I A;  2Q2Y A;  5GSZ A;  2WOG A;  4PFP A;  2UYM A;  4GKR A;  1KK7 A;  3K3B A;  3B6V A;  4PFO A;  2VB6 A;  1CZ7 A;  4PJM A;  4PJJ A;  3KAR A;  3ZFD A;  5LT1 A;  1VFZ A;  2OWM A;  2XT3 A;  1I5S A;  1N6M A;  4UBF A;  3H4S A;  4E7Z A;  2ZFK A;  2GRY A;  4A5Y A;  3WRD A;  2MYS A;  4ZCA A;  2X2R A;  2V26 A;  4A28 A;  1LKX A;  2X7E A;  4ETP A;  1RY6 A;  1MKJ A;  2KIN A;  1V8J A; 
#chains in the Genus database with same CATH topology
 1MMA A;  3L9H A;  3NWN A;  5LT3 A;  3ZCW A;  2FL2 A;  2G1Q A;  1VFV A;  1MNE A;  3DCB A;  5LT2 A;  1D1C A;  1VFW A;  1F9T A;  3WPN A;  1D1A A;  4H1G A;  1LVK A;  2O0A A;  4GKP A;  1BR4 A;  4GKQ A;  4A50 A;  1F9U A;  2FME A;  1FMV A;  4ZHI A;  4A1Z A;  2FKY A;  4HNA K;  1VOM A;  3ZFC A;  1T5C A;  2VAS A;  3CJO A;  4BXN A;  1D0Y A;  4A14 A;  2IEH A;  4BN2 A;  5LT0 A;  1BG2 A;  4B7B A;  2X51 A;  1MMD A;  2X7D A;  4DBR A;  4E7S A;  5LT4 A;  1YRS A;  3CNZ A;  1SDM A;  2Y65 A;  1G8X A;  2Y5W A;  4PK4 A;  1F9W A;  4A51 A;  3HQD A;  2NCD A;  2FL6 A;  2XAE A;  3COB A;  1X88 A;  2HEH A;  1F9V A;  2ZFI A;  4FRZ A;  4BBG A;  2X7C A;  4PJL A;  1II6 A;  4DBQ A;  2UYI A;  1Q0B A;  1D0X A;  1V8K A;  1BR1 A;  3LRE A;  1D1B A;  1D0Z A;  1MMN A;  3T0Q A;  4PJN A;  3B6U A;  3PXN A;  3K5E A;  2ZFL A;  1VFX A;  1MMG A;  1FMW A;  3KEN A;  2PG2 A;  2VVG A;  2Q2Z A;  2ZFM A;  3DC4 A;  2GM1 A;  3GBJ A;  4AS7 A;  3U06 A;  2ZFJ A;  3BFN A;  1GOJ A;  5HLE A;  4AP0 A;  4ANJ A;  3X2T A;  4LNU K;  1BR2 A;  3KIN A;  4Y05 A;  3L1C A;  1I6I A;  2Q2Y A;  5GSZ A;  2WOG A;  4PFP A;  2UYM A;  4GKR A;  1KK7 A;  3K3B A;  3B6V A;  4ETP B;  4PFO A;  2VB6 A;  1CZ7 A;  4PJM A;  4PJJ A;  3KAR A;  3ZFD A;  5LT1 A;  1VFZ A;  2OWM A;  2XT3 A;  1I5S A;  1N6M A;  4UBF A;  3H4S A;  4E7Z A;  2ZFK A;  2GRY A;  4A5Y A;  3WRD A;  2MYS A;  4ZCA A;  2X2R A;  2V26 A;  4A28 A;  1LKX A;  2X7E A;  4ETP A;  1RY6 A;  1MKJ A;  2KIN A;  1V8J A; 
#chains in the Genus database with same CATH homology
 1MMA A;  3L9H A;  3NWN A;  5LT3 A;  3ZCW A;  2FL2 A;  2G1Q A;  1VFV A;  1MNE A;  3DCB A;  5LT2 A;  1D1C A;  1VFW A;  1F9T A;  3WPN A;  1D1A A;  4H1G A;  1LVK A;  4A50 A;  1BR4 A;  1F9U A;  2FME A;  1FMV A;  4ZHI A;  4A1Z A;  2FKY A;  4HNA K;  1VOM A;  3ZFC A;  1T5C A;  2VAS A;  3CJO A;  4BXN A;  1D0Y A;  4A14 A;  2IEH A;  4BN2 A;  5LT0 A;  1BG2 A;  4B7B A;  2X51 A;  1MMD A;  2X7D A;  4DBR A;  4E7S A;  5LT4 A;  1YRS A;  3CNZ A;  1SDM A;  2Y65 A;  1G8X A;  2Y5W A;  4PK4 A;  1F9W A;  4A51 A;  3HQD A;  2NCD A;  2FL6 A;  2XAE A;  3COB A;  1X88 A;  2HEH A;  1F9V A;  2ZFI A;  4FRZ A;  4BBG A;  2X7C A;  4PJL A;  1II6 A;  4DBQ A;  2UYI A;  1Q0B A;  1D0X A;  1V8K A;  1BR1 A;  3LRE A;  1D1B A;  1D0Z A;  1MMN A;  3T0Q A;  4PJN A;  3B6U A;  3PXN A;  3K5E A;  2ZFL A;  1VFX A;  1MMG A;  1FMW A;  3KEN A;  2PG2 A;  2VVG A;  2Q2Z A;  2ZFM A;  3DC4 A;  2GM1 A;  3GBJ A;  4AS7 A;  3U06 A;  2ZFJ A;  3BFN A;  1GOJ A;  5HLE A;  4AP0 A;  4ANJ A;  3X2T A;  4LNU K;  1BR2 A;  3KIN A;  4Y05 A;  3L1C A;  1I6I A;  2Q2Y A;  5GSZ A;  2WOG A;  4PFP A;  2UYM A;  4GKR A;  1KK7 A;  3K3B A;  3B6V A;  4PFO A;  2VB6 A;  1CZ7 A;  4PJM A;  4PJJ A;  3KAR A;  3ZFD A;  5LT1 A;  1VFZ A;  2OWM A;  2XT3 A;  1I5S A;  1N6M A;  4UBF A;  3H4S A;  4E7Z A;  2ZFK A;  2GRY A;  4A5Y A;  3WRD A;  2MYS A;  4ZCA A;  2X2R A;  2V26 A;  4A28 A;  1LKX A;  2X7E A;  4ETP A;  1RY6 A;  1MKJ A;  2KIN A;  1V8J A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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