3L1CA

Kinesin-14 protein ncd, t436s mutant
Total Genus 120
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
120
sequence length
380
structure length
355
Chain Sequence
MHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQSGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSESPKTSNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Kinesin-14 Ncd
publication title A kinesin motor in a force-producing conformation.
pubmed doi rcsb
source organism Drosophila melanogaster
molecule tags Motor protein
total genus 120
structure length 355
sequence length 380
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-12-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00225 Kinesin Kinesin motor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.850.10 Alpha Beta 3-Layer(aba) Sandwich Kinesin Kinesin motor domain 3l1cA00
2ZFIA 4AS7A 2OWMA 4BBGA 2HEHA 4A50A 5LT1A 5HLEA 3LREA 4UBFA 1GOJA 3T0QA 2X7EA 4ZHIA 1VFVA 2XAEA 2GRYA 2FKYA 3DCBA 1MNEA 1FMVA 2ZFKA 4A1ZA 2G1QA 1D0YA 3CJOA 1D1CA 3NWNA 4LNUK 4PFOA 3U06A 2ZFJA 2VB6A 2Q2ZA 1V8JA 3B6UA 3K5EA 2PG2A 4ZCAA 2Q2YA 3PXNA 4ETPA 2UYMA 3CNZA 1F9WA 4PFPA 4E7SA 2GM1A 4DBRA 1MMGA 1I5SA 1F9TA 2X51A 4PJMA 5LT4A 4A5YA 3DC4A 4FRZA 4Y05A 3BFNA 2FL6A 3WPNA 3KARA 3GBJA 1VFWA 1MKJA 3KENA 2Y65A 2X7CA 2V26A 1MMDA 5LT3A 4A28A 1KK7A 2WOGA 1D0ZA 1BR2A 1RY6A 4PJLA 3X2TA 2NCDA 1G8XA 2FMEA 2UYIA 3B6VA 4DBQA 1CZ7A 1X88A 1BR1A 1LKXA 5LT2A 2FL2A 1BR4A 4B7BA 2XT3A 1V8KA 3ZFDA 4A51A 1SDMA 4BN2A 1N6MA 3KINA 1F9UA 2VVGA 3L1CA 2VASA 3L9HA 1VOMA 1II6A 4BXNA 1T5CA 2ZFLA 1D0XA 2KINA 4H1GA 4E7ZA 4PJJA 1FMWA 3ZFCA 5LT0A 4PJNA 2IEHA 4PK4A 3ZCWA 1LVKA 2Y5WA 1D1AA 4A14A 4AP0A 1Q0BA 1MMAA 3K3BA 1VFXA 2MYSA 1D1BA 3HQDA 1F9VA 4GKRA 1MMNA 5GSZA 3H4SA 1BG2A 3COBA 1VFZA 1YRSA 2X7DA 2ZFMA 2X2RA 3WRDA 4ANJA 1I6IA 4HNAK
chains in the Genus database with same CATH superfamily
2ZFIA 4AS7A 2OWMA 4BBGA 2HEHA 4A50A 5LT1A 5HLEA 3LREA 4UBFA 1GOJA 3T0QA 2X7EA 4ZHIA 1VFVA 2XAEA 2GRYA 2FKYA 3DCBA 1MNEA 1FMVA 2ZFKA 4A1ZA 2G1QA 1D0YA 3CJOA 1D1CA 3NWNA 4LNUK 4PFOA 3U06A 2ZFJA 2VB6A 2Q2ZA 4GKQA 1V8JA 3B6UA 3K5EA 2PG2A 4ZCAA 2Q2YA 3PXNA 4ETPA 2UYMA 3CNZA 1F9WA 4PFPA 4E7SA 2GM1A 4DBRA 1MMGA 1I5SA 1F9TA 2X51A 4PJMA 4ETPB 5LT4A 4A5YA 3DC4A 4FRZA 4Y05A 3BFNA 2FL6A 3WPNA 3KARA 3GBJA 1VFWA 1MKJA 3KENA 2Y65A 2X7CA 2V26A 1MMDA 5LT3A 4A28A 1KK7A 2WOGA 1D0ZA 1BR2A 1RY6A 4PJLA 3X2TA 2NCDA 1G8XA 2FMEA 2UYIA 3B6VA 4DBQA 1CZ7A 1X88A 1BR1A 1LKXA 5LT2A 2FL2A 1BR4A 4B7BA 2O0AA 2XT3A 1V8KA 3ZFDA 4A51A 1SDMA 4BN2A 1N6MA 4GKPA 3KINA 1F9UA 2VVGA 3L1CA 2VASA 3L9HA 1VOMA 1II6A 4BXNA 1T5CA 2ZFLA 1D0XA 2KINA 4H1GA 4E7ZA 4PJJA 1FMWA 3ZFCA 5LT0A 4PJNA 2IEHA 4PK4A 3ZCWA 1LVKA 2Y5WA 1D1AA 4A14A 4AP0A 1Q0BA 1MMAA 3K3BA 1VFXA 2MYSA 1D1BA 3HQDA 1F9VA 4GKRA 1MMNA 5GSZA 3H4SA 1BG2A 3COBA 1VFZA 1YRSA 2X7DA 2ZFMA 2X2RA 3WRDA 4ANJA 1I6IA 4HNAK
chains in the Genus database with same CATH topology
2ZFIA 4AS7A 2OWMA 4BBGA 2HEHA 4A50A 5LT1A 5HLEA 3LREA 4UBFA 1GOJA 3T0QA 2X7EA 4ZHIA 1VFVA 2XAEA 2GRYA 2FKYA 3DCBA 1MNEA 1FMVA 2ZFKA 4A1ZA 2G1QA 1D0YA 3CJOA 1D1CA 3NWNA 4LNUK 4PFOA 3U06A 2ZFJA 2VB6A 2Q2ZA 1V8JA 3B6UA 3K5EA 2PG2A 4ZCAA 2Q2YA 3PXNA 4ETPA 2UYMA 3CNZA 1F9WA 4PFPA 4E7SA 2GM1A 4DBRA 1MMGA 1I5SA 1F9TA 2X51A 4PJMA 5LT4A 4A5YA 3DC4A 4FRZA 4Y05A 3BFNA 2FL6A 3WPNA 3KARA 3GBJA 1VFWA 1MKJA 3KENA 2Y65A 2X7CA 2V26A 1MMDA 5LT3A 4A28A 1KK7A 2WOGA 1D0ZA 1BR2A 1RY6A 4PJLA 3X2TA 2NCDA 1G8XA 2FMEA 2UYIA 3B6VA 4DBQA 1CZ7A 1X88A 1BR1A 1LKXA 5LT2A 2FL2A 1BR4A 4B7BA 2XT3A 1V8KA 3ZFDA 4A51A 1SDMA 4BN2A 1N6MA 3KINA 1F9UA 2VVGA 3L1CA 2VASA 3L9HA 1VOMA 1II6A 4BXNA 1T5CA 2ZFLA 1D0XA 2KINA 4H1GA 4E7ZA 4PJJA 1FMWA 3ZFCA 5LT0A 4PJNA 2IEHA 4PK4A 3ZCWA 1LVKA 2Y5WA 1D1AA 4A14A 4AP0A 1Q0BA 1MMAA 3K3BA 1VFXA 2MYSA 1D1BA 3HQDA 1F9VA 4GKRA 1MMNA 5GSZA 3H4SA 1BG2A 3COBA 1VFZA 1YRSA 2X7DA 2ZFMA 2X2RA 3WRDA 4ANJA 1I6IA 4HNAK
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ZFI A;  4AS7 A;  2OWM A;  4BBG A;  2HEH A;  4A50 A;  5LT1 A;  5HLE A;  3LRE A;  4UBF A;  1GOJ A;  3T0Q A;  2X7E A;  4ZHI A;  1VFV A;  2XAE A;  2GRY A;  2FKY A;  3DCB A;  1MNE A;  1FMV A;  2ZFK A;  4A1Z A;  2G1Q A;  1D0Y A;  3CJO A;  1D1C A;  3NWN A;  4LNU K;  4PFO A;  3U06 A;  2ZFJ A;  2VB6 A;  2Q2Z A;  1V8J A;  3B6U A;  3K5E A;  2PG2 A;  4ZCA A;  2Q2Y A;  3PXN A;  4ETP A;  2UYM A;  3CNZ A;  1F9W A;  4PFP A;  4E7S A;  2GM1 A;  4DBR A;  1MMG A;  1I5S A;  1F9T A;  2X51 A;  4PJM A;  5LT4 A;  4A5Y A;  3DC4 A;  4FRZ A;  4Y05 A;  3BFN A;  2FL6 A;  3WPN A;  3KAR A;  3GBJ A;  1VFW A;  1MKJ A;  3KEN A;  2Y65 A;  2X7C A;  2V26 A;  1MMD A;  5LT3 A;  4A28 A;  1KK7 A;  2WOG A;  1D0Z A;  1BR2 A;  1RY6 A;  4PJL A;  3X2T A;  2NCD A;  1G8X A;  2FME A;  2UYI A;  3B6V A;  4DBQ A;  1CZ7 A;  1X88 A;  1BR1 A;  1LKX A;  5LT2 A;  2FL2 A;  1BR4 A;  4B7B A;  2XT3 A;  1V8K A;  3ZFD A;  4A51 A;  1SDM A;  4BN2 A;  1N6M A;  3KIN A;  1F9U A;  2VVG A;  3L1C A;  2VAS A;  3L9H A;  1VOM A;  1II6 A;  4BXN A;  1T5C A;  2ZFL A;  1D0X A;  2KIN A;  4H1G A;  4E7Z A;  4PJJ A;  1FMW A;  3ZFC A;  5LT0 A;  4PJN A;  2IEH A;  4PK4 A;  3ZCW A;  1LVK A;  2Y5W A;  1D1A A;  4A14 A;  4AP0 A;  1Q0B A;  1MMA A;  3K3B A;  1VFX A;  2MYS A;  1D1B A;  3HQD A;  1F9V A;  4GKR A;  1MMN A;  5GSZ A;  3H4S A;  1BG2 A;  3COB A;  1VFZ A;  1YRS A;  2X7D A;  2ZFM A;  2X2R A;  3WRD A;  4ANJ A;  1I6I A;  4HNA K; 
#chains in the Genus database with same CATH topology
 2ZFI A;  4AS7 A;  2OWM A;  4BBG A;  2HEH A;  4A50 A;  5LT1 A;  5HLE A;  3LRE A;  4UBF A;  1GOJ A;  3T0Q A;  2X7E A;  4ZHI A;  1VFV A;  2XAE A;  2GRY A;  2FKY A;  3DCB A;  1MNE A;  1FMV A;  2ZFK A;  4A1Z A;  2G1Q A;  1D0Y A;  3CJO A;  1D1C A;  3NWN A;  4LNU K;  4PFO A;  3U06 A;  2ZFJ A;  2VB6 A;  2Q2Z A;  4GKQ A;  1V8J A;  3B6U A;  3K5E A;  2PG2 A;  4ZCA A;  2Q2Y A;  3PXN A;  4ETP A;  2UYM A;  3CNZ A;  1F9W A;  4PFP A;  4E7S A;  2GM1 A;  4DBR A;  1MMG A;  1I5S A;  1F9T A;  2X51 A;  4PJM A;  4ETP B;  5LT4 A;  4A5Y A;  3DC4 A;  4FRZ A;  4Y05 A;  3BFN A;  2FL6 A;  3WPN A;  3KAR A;  3GBJ A;  1VFW A;  1MKJ A;  3KEN A;  2Y65 A;  2X7C A;  2V26 A;  1MMD A;  5LT3 A;  4A28 A;  1KK7 A;  2WOG A;  1D0Z A;  1BR2 A;  1RY6 A;  4PJL A;  3X2T A;  2NCD A;  1G8X A;  2FME A;  2UYI A;  3B6V A;  4DBQ A;  1CZ7 A;  1X88 A;  1BR1 A;  1LKX A;  5LT2 A;  2FL2 A;  1BR4 A;  4B7B A;  2O0A A;  2XT3 A;  1V8K A;  3ZFD A;  4A51 A;  1SDM A;  4BN2 A;  1N6M A;  4GKP A;  3KIN A;  1F9U A;  2VVG A;  3L1C A;  2VAS A;  3L9H A;  1VOM A;  1II6 A;  4BXN A;  1T5C A;  2ZFL A;  1D0X A;  2KIN A;  4H1G A;  4E7Z A;  4PJJ A;  1FMW A;  3ZFC A;  5LT0 A;  4PJN A;  2IEH A;  4PK4 A;  3ZCW A;  1LVK A;  2Y5W A;  1D1A A;  4A14 A;  4AP0 A;  1Q0B A;  1MMA A;  3K3B A;  1VFX A;  2MYS A;  1D1B A;  3HQD A;  1F9V A;  4GKR A;  1MMN A;  5GSZ A;  3H4S A;  1BG2 A;  3COB A;  1VFZ A;  1YRS A;  2X7D A;  2ZFM A;  2X2R A;  3WRD A;  4ANJ A;  1I6I A;  4HNA K; 
#chains in the Genus database with same CATH homology
 2ZFI A;  4AS7 A;  2OWM A;  4BBG A;  2HEH A;  4A50 A;  5LT1 A;  5HLE A;  3LRE A;  4UBF A;  1GOJ A;  3T0Q A;  2X7E A;  4ZHI A;  1VFV A;  2XAE A;  2GRY A;  2FKY A;  3DCB A;  1MNE A;  1FMV A;  2ZFK A;  4A1Z A;  2G1Q A;  1D0Y A;  3CJO A;  1D1C A;  3NWN A;  4LNU K;  4PFO A;  3U06 A;  2ZFJ A;  2VB6 A;  2Q2Z A;  1V8J A;  3B6U A;  3K5E A;  2PG2 A;  4ZCA A;  2Q2Y A;  3PXN A;  4ETP A;  2UYM A;  3CNZ A;  1F9W A;  4PFP A;  4E7S A;  2GM1 A;  4DBR A;  1MMG A;  1I5S A;  1F9T A;  2X51 A;  4PJM A;  5LT4 A;  4A5Y A;  3DC4 A;  4FRZ A;  4Y05 A;  3BFN A;  2FL6 A;  3WPN A;  3KAR A;  3GBJ A;  1VFW A;  1MKJ A;  3KEN A;  2Y65 A;  2X7C A;  2V26 A;  1MMD A;  5LT3 A;  4A28 A;  1KK7 A;  2WOG A;  1D0Z A;  1BR2 A;  1RY6 A;  4PJL A;  3X2T A;  2NCD A;  1G8X A;  2FME A;  2UYI A;  3B6V A;  4DBQ A;  1CZ7 A;  1X88 A;  1BR1 A;  1LKX A;  5LT2 A;  2FL2 A;  1BR4 A;  4B7B A;  2XT3 A;  1V8K A;  3ZFD A;  4A51 A;  1SDM A;  4BN2 A;  1N6M A;  3KIN A;  1F9U A;  2VVG A;  3L1C A;  2VAS A;  3L9H A;  1VOM A;  1II6 A;  4BXN A;  1T5C A;  2ZFL A;  1D0X A;  2KIN A;  4H1G A;  4E7Z A;  4PJJ A;  1FMW A;  3ZFC A;  5LT0 A;  4PJN A;  2IEH A;  4PK4 A;  3ZCW A;  1LVK A;  2Y5W A;  1D1A A;  4A14 A;  4AP0 A;  1Q0B A;  1MMA A;  3K3B A;  1VFX A;  2MYS A;  1D1B A;  3HQD A;  1F9V A;  4GKR A;  1MMN A;  5GSZ A;  3H4S A;  1BG2 A;  3COB A;  1VFZ A;  1YRS A;  2X7D A;  2ZFM A;  2X2R A;  3WRD A;  4ANJ A;  1I6I A;  4HNA K; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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