5LT1A

Nucleotide-free kinesin-1 motor domain t92v mutant, p21 crystal form
Total Genus 108
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
108
sequence length
318
structure length
309
Chain Sequence
SNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIASKPYAFDRVFQSSTSQEQVYNDAAKKIVKDVLEGYNGTIFAYGQTSSGKVHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGATERFVSSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNARTTIVICCSPSSYNESETKSTLLFGQRAKT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Kinesin-like protein
publication title The structural switch of nucleotide-free kinesin.
pubmed doi rcsb
source organism Homo sapiens
molecule tags Motor protein
total genus 108
structure length 309
sequence length 318
chains with identical sequence B
ec nomenclature
pdb deposition date 2016-09-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00225 Kinesin Kinesin motor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.850.10 Alpha Beta 3-Layer(aba) Sandwich Kinesin Kinesin motor domain 5lt1A00
3B6UA 2UYIA 5LT3A 1G8XA 2VB6A 3KENA 2PG2A 2VVGA 1F9TA 4DBQA 1F9WA 3L1CA 1BR2A 2FKYA 2HEHA 1RY6A 5LT0A 1T5CA 2NCDA 3K3BA 1FMWA 4DBRA 2OWMA 1MMNA 1I6IA 2XT3A 1MMGA 2Y65A 1V8KA 4BBGA 2MYSA 3DC4A 4PJLA 4AS7A 4ZCAA 4A5YA 2FL2A 4A50A 2ZFIA 4A1ZA 3H4SA 3LREA 2V26A 3DCBA 4ETPA 4Y05A 3CNZA 1MNEA 4PFPA 1I5SA 1MKJA 2X7CA 4A28A 5LT4A 1D1AA 2GM1A 1F9VA 2Q2YA 1VOMA 5LT2A 4LNUK 2ZFLA 4UBFA 1LVKA 4HNAK 2UYMA 1MMDA 2IEHA 2X7DA 1LKXA 4GKRA 1YRSA 1VFWA 2X2RA 3B6VA 3PXNA 2VASA 1D0XA 1D0ZA 2ZFJA 1II6A 4A14A 4BN2A 1VFZA 4AP0A 3ZFCA 2X7EA 3L9HA 1BG2A 1VFXA 1VFVA 1X88A 3U06A 4E7SA 2FMEA 1D0YA 2KINA 4PK4A 4B7BA 3X2TA 3BFNA 2ZFMA 2FL6A 4ZHIA 1V8JA 4PFOA 2G1QA 3CJOA 3COBA 2ZFKA 1CZ7A 1Q0BA 2X51A 2GRYA 2WOGA 1KK7A 5GSZA 4PJNA 4PJMA 1N6MA 3WRDA 1BR1A 1F9UA 1BR4A 2XAEA 5HLEA 1GOJA 2Y5WA 4A51A 1SDMA 4FRZA 3KINA 3ZFDA 3KARA 4ANJA 4E7ZA 3HQDA 1FMVA 3NWNA 5LT1A 4PJJA 3GBJA 1MMAA 4BXNA 3T0QA 1D1BA 1D1CA 2Q2ZA 3K5EA 3ZCWA 3WPNA 4H1GA
chains in the Genus database with same CATH superfamily
4GKQA 3B6UA 2UYIA 5LT3A 1G8XA 2VB6A 3KENA 2PG2A 2VVGA 1F9TA 4DBQA 1F9WA 3L1CA 2O0AA 1BR2A 2FKYA 2HEHA 1RY6A 5LT0A 1T5CA 2NCDA 3K3BA 1FMWA 4DBRA 2OWMA 1MMNA 1I6IA 2XT3A 1MMGA 2Y65A 1V8KA 4BBGA 2MYSA 3DC4A 4PJLA 4AS7A 4ZCAA 4A5YA 2FL2A 4A50A 2ZFIA 4A1ZA 3H4SA 3LREA 2V26A 3DCBA 4ETPA 4Y05A 3CNZA 1MNEA 4PFPA 1I5SA 1MKJA 2X7CA 4A28A 5LT4A 1D1AA 2GM1A 1F9VA 2Q2YA 1VOMA 5LT2A 4LNUK 2ZFLA 4UBFA 1LVKA 4HNAK 2UYMA 1MMDA 2IEHA 2X7DA 1LKXA 4GKRA 1YRSA 1VFWA 2X2RA 3B6VA 3PXNA 2VASA 1D0XA 1D0ZA 2ZFJA 1II6A 4A14A 4BN2A 1VFZA 4AP0A 3ZFCA 2X7EA 3L9HA 1BG2A 1VFXA 1VFVA 1X88A 3U06A 4E7SA 2FMEA 1D0YA 2KINA 4PK4A 4B7BA 3X2TA 3BFNA 2ZFMA 2FL6A 4ZHIA 1V8JA 4PFOA 2G1QA 3CJOA 3COBA 2ZFKA 4ETPB 1CZ7A 1Q0BA 2X51A 2GRYA 2WOGA 1KK7A 4GKPA 5GSZA 4PJNA 4PJMA 1N6MA 3WRDA 1BR1A 1F9UA 1BR4A 2XAEA 5HLEA 1GOJA 2Y5WA 4A51A 1SDMA 4FRZA 3KINA 3ZFDA 3KARA 4ANJA 4E7ZA 3HQDA 1FMVA 3NWNA 5LT1A 4PJJA 3GBJA 1MMAA 4BXNA 3T0QA 1D1BA 1D1CA 2Q2ZA 3K5EA 3ZCWA 3WPNA 4H1GA
chains in the Genus database with same CATH topology
3B6UA 2UYIA 5LT3A 1G8XA 2VB6A 3KENA 2PG2A 2VVGA 1F9TA 4DBQA 1F9WA 3L1CA 1BR2A 2FKYA 2HEHA 1RY6A 5LT0A 1T5CA 2NCDA 3K3BA 1FMWA 4DBRA 2OWMA 1MMNA 1I6IA 2XT3A 1MMGA 2Y65A 1V8KA 4BBGA 2MYSA 3DC4A 4PJLA 4AS7A 4ZCAA 4A5YA 2FL2A 4A50A 2ZFIA 4A1ZA 3H4SA 3LREA 2V26A 3DCBA 4ETPA 4Y05A 3CNZA 1MNEA 4PFPA 1I5SA 1MKJA 2X7CA 4A28A 5LT4A 1D1AA 2GM1A 1F9VA 2Q2YA 1VOMA 5LT2A 4LNUK 2ZFLA 4UBFA 1LVKA 4HNAK 2UYMA 1MMDA 2IEHA 2X7DA 1LKXA 4GKRA 1YRSA 1VFWA 2X2RA 3B6VA 3PXNA 2VASA 1D0XA 1D0ZA 2ZFJA 1II6A 4A14A 4BN2A 1VFZA 4AP0A 3ZFCA 2X7EA 3L9HA 1BG2A 1VFXA 1VFVA 1X88A 3U06A 4E7SA 2FMEA 1D0YA 2KINA 4PK4A 4B7BA 3X2TA 3BFNA 2ZFMA 2FL6A 4ZHIA 1V8JA 4PFOA 2G1QA 3CJOA 3COBA 2ZFKA 1CZ7A 1Q0BA 2X51A 2GRYA 2WOGA 1KK7A 5GSZA 4PJNA 4PJMA 1N6MA 3WRDA 1BR1A 1F9UA 1BR4A 2XAEA 5HLEA 1GOJA 2Y5WA 4A51A 1SDMA 4FRZA 3KINA 3ZFDA 3KARA 4ANJA 4E7ZA 3HQDA 1FMVA 3NWNA 5LT1A 4PJJA 3GBJA 1MMAA 4BXNA 3T0QA 1D1BA 1D1CA 2Q2ZA 3K5EA 3ZCWA 3WPNA 4H1GA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3B6U A;  2UYI A;  5LT3 A;  1G8X A;  2VB6 A;  3KEN A;  2PG2 A;  2VVG A;  1F9T A;  4DBQ A;  1F9W A;  3L1C A;  1BR2 A;  2FKY A;  2HEH A;  1RY6 A;  5LT0 A;  1T5C A;  2NCD A;  3K3B A;  1FMW A;  4DBR A;  2OWM A;  1MMN A;  1I6I A;  2XT3 A;  1MMG A;  2Y65 A;  1V8K A;  4BBG A;  2MYS A;  3DC4 A;  4PJL A;  4AS7 A;  4ZCA A;  4A5Y A;  2FL2 A;  4A50 A;  2ZFI A;  4A1Z A;  3H4S A;  3LRE A;  2V26 A;  3DCB A;  4ETP A;  4Y05 A;  3CNZ A;  1MNE A;  4PFP A;  1I5S A;  1MKJ A;  2X7C A;  4A28 A;  5LT4 A;  1D1A A;  2GM1 A;  1F9V A;  2Q2Y A;  1VOM A;  5LT2 A;  4LNU K;  2ZFL A;  4UBF A;  1LVK A;  4HNA K;  2UYM A;  1MMD A;  2IEH A;  2X7D A;  1LKX A;  4GKR A;  1YRS A;  1VFW A;  2X2R A;  3B6V A;  3PXN A;  2VAS A;  1D0X A;  1D0Z A;  2ZFJ A;  1II6 A;  4A14 A;  4BN2 A;  1VFZ A;  4AP0 A;  3ZFC A;  2X7E A;  3L9H A;  1BG2 A;  1VFX A;  1VFV A;  1X88 A;  3U06 A;  4E7S A;  2FME A;  1D0Y A;  2KIN A;  4PK4 A;  4B7B A;  3X2T A;  3BFN A;  2ZFM A;  2FL6 A;  4ZHI A;  1V8J A;  4PFO A;  2G1Q A;  3CJO A;  3COB A;  2ZFK A;  1CZ7 A;  1Q0B A;  2X51 A;  2GRY A;  2WOG A;  1KK7 A;  5GSZ A;  4PJN A;  4PJM A;  1N6M A;  3WRD A;  1BR1 A;  1F9U A;  1BR4 A;  2XAE A;  5HLE A;  1GOJ A;  2Y5W A;  4A51 A;  1SDM A;  4FRZ A;  3KIN A;  3ZFD A;  3KAR A;  4ANJ A;  4E7Z A;  3HQD A;  1FMV A;  3NWN A;  5LT1 A;  4PJJ A;  3GBJ A;  1MMA A;  4BXN A;  3T0Q A;  1D1B A;  1D1C A;  2Q2Z A;  3K5E A;  3ZCW A;  3WPN A;  4H1G A; 
#chains in the Genus database with same CATH topology
 4GKQ A;  3B6U A;  2UYI A;  5LT3 A;  1G8X A;  2VB6 A;  3KEN A;  2PG2 A;  2VVG A;  1F9T A;  4DBQ A;  1F9W A;  3L1C A;  2O0A A;  1BR2 A;  2FKY A;  2HEH A;  1RY6 A;  5LT0 A;  1T5C A;  2NCD A;  3K3B A;  1FMW A;  4DBR A;  2OWM A;  1MMN A;  1I6I A;  2XT3 A;  1MMG A;  2Y65 A;  1V8K A;  4BBG A;  2MYS A;  3DC4 A;  4PJL A;  4AS7 A;  4ZCA A;  4A5Y A;  2FL2 A;  4A50 A;  2ZFI A;  4A1Z A;  3H4S A;  3LRE A;  2V26 A;  3DCB A;  4ETP A;  4Y05 A;  3CNZ A;  1MNE A;  4PFP A;  1I5S A;  1MKJ A;  2X7C A;  4A28 A;  5LT4 A;  1D1A A;  2GM1 A;  1F9V A;  2Q2Y A;  1VOM A;  5LT2 A;  4LNU K;  2ZFL A;  4UBF A;  1LVK A;  4HNA K;  2UYM A;  1MMD A;  2IEH A;  2X7D A;  1LKX A;  4GKR A;  1YRS A;  1VFW A;  2X2R A;  3B6V A;  3PXN A;  2VAS A;  1D0X A;  1D0Z A;  2ZFJ A;  1II6 A;  4A14 A;  4BN2 A;  1VFZ A;  4AP0 A;  3ZFC A;  2X7E A;  3L9H A;  1BG2 A;  1VFX A;  1VFV A;  1X88 A;  3U06 A;  4E7S A;  2FME A;  1D0Y A;  2KIN A;  4PK4 A;  4B7B A;  3X2T A;  3BFN A;  2ZFM A;  2FL6 A;  4ZHI A;  1V8J A;  4PFO A;  2G1Q A;  3CJO A;  3COB A;  2ZFK A;  4ETP B;  1CZ7 A;  1Q0B A;  2X51 A;  2GRY A;  2WOG A;  1KK7 A;  4GKP A;  5GSZ A;  4PJN A;  4PJM A;  1N6M A;  3WRD A;  1BR1 A;  1F9U A;  1BR4 A;  2XAE A;  5HLE A;  1GOJ A;  2Y5W A;  4A51 A;  1SDM A;  4FRZ A;  3KIN A;  3ZFD A;  3KAR A;  4ANJ A;  4E7Z A;  3HQD A;  1FMV A;  3NWN A;  5LT1 A;  4PJJ A;  3GBJ A;  1MMA A;  4BXN A;  3T0Q A;  1D1B A;  1D1C A;  2Q2Z A;  3K5E A;  3ZCW A;  3WPN A;  4H1G A; 
#chains in the Genus database with same CATH homology
 3B6U A;  2UYI A;  5LT3 A;  1G8X A;  2VB6 A;  3KEN A;  2PG2 A;  2VVG A;  1F9T A;  4DBQ A;  1F9W A;  3L1C A;  1BR2 A;  2FKY A;  2HEH A;  1RY6 A;  5LT0 A;  1T5C A;  2NCD A;  3K3B A;  1FMW A;  4DBR A;  2OWM A;  1MMN A;  1I6I A;  2XT3 A;  1MMG A;  2Y65 A;  1V8K A;  4BBG A;  2MYS A;  3DC4 A;  4PJL A;  4AS7 A;  4ZCA A;  4A5Y A;  2FL2 A;  4A50 A;  2ZFI A;  4A1Z A;  3H4S A;  3LRE A;  2V26 A;  3DCB A;  4ETP A;  4Y05 A;  3CNZ A;  1MNE A;  4PFP A;  1I5S A;  1MKJ A;  2X7C A;  4A28 A;  5LT4 A;  1D1A A;  2GM1 A;  1F9V A;  2Q2Y A;  1VOM A;  5LT2 A;  4LNU K;  2ZFL A;  4UBF A;  1LVK A;  4HNA K;  2UYM A;  1MMD A;  2IEH A;  2X7D A;  1LKX A;  4GKR A;  1YRS A;  1VFW A;  2X2R A;  3B6V A;  3PXN A;  2VAS A;  1D0X A;  1D0Z A;  2ZFJ A;  1II6 A;  4A14 A;  4BN2 A;  1VFZ A;  4AP0 A;  3ZFC A;  2X7E A;  3L9H A;  1BG2 A;  1VFX A;  1VFV A;  1X88 A;  3U06 A;  4E7S A;  2FME A;  1D0Y A;  2KIN A;  4PK4 A;  4B7B A;  3X2T A;  3BFN A;  2ZFM A;  2FL6 A;  4ZHI A;  1V8J A;  4PFO A;  2G1Q A;  3CJO A;  3COB A;  2ZFK A;  1CZ7 A;  1Q0B A;  2X51 A;  2GRY A;  2WOG A;  1KK7 A;  5GSZ A;  4PJN A;  4PJM A;  1N6M A;  3WRD A;  1BR1 A;  1F9U A;  1BR4 A;  2XAE A;  5HLE A;  1GOJ A;  2Y5W A;  4A51 A;  1SDM A;  4FRZ A;  3KIN A;  3ZFD A;  3KAR A;  4ANJ A;  4E7Z A;  3HQD A;  1FMV A;  3NWN A;  5LT1 A;  4PJJ A;  3GBJ A;  1MMA A;  4BXN A;  3T0Q A;  1D1B A;  1D1C A;  2Q2Z A;  3K5E A;  3ZCW A;  3WPN A;  4H1G A; 
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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