The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
221
|
sequence length |
709
|
structure length |
670
|
Chain Sequence |
KIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDAALAAAQTNAAALKGNIRVFCRIRNVDIIQYEAPQQELVITRNINNNFSNLRFLFDKIFEREQSNDLVFEELSQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHPTNGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNPKIDPNTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKHSSRSHSIFIIDLQGYNSLTKESSYGTLNLIDLAGSERRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRNSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATKVNN
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structure of the Candida albicans Kar3 kinesin motor domain fused to maltose-binding protein.
pubmed doi rcsb |
| molecule tags |
Motor protein
|
| source organism |
Escherichia coli
|
| molecule keywords |
Maltose binding protein-CaKar3 motor domain fusion protein
|
| total genus |
221
|
| structure length |
670
|
| sequence length |
709
|
| ec nomenclature | |
| pdb deposition date | 2012-09-10 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00225 | Kinesin | Kinesin motor domain |
| A | PF01547 | SBP_bac_1 | Bacterial extracellular solute-binding protein |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Kinesin | Kinesin motor domain |
#chains in the Genus database with same CATH superfamily 2UYM A; 2ZFL A; 3LRE A; 4UBF A; 4BXN A; 1LKX A; 3CNZ A; 3KAR A; 3GBJ A; 4A14 A; 2VVG A; 1MMA A; 3KEN A; 5LT0 A; 2UYI A; 4BN2 A; 2MYS A; 2X51 A; 1RY6 A; 5LT2 A; 4A50 A; 4GKR A; 4A28 A; 4ETP A; 1T5C A; 1D1A A; 2ZFI A; 1BG2 A; 1BR2 A; 1FMW A; 2Q2Z A; 4PJN A; 1SDM A; 1V8K A; 2XAE A; 3B6U A; 3HQD A; 2X7D A; 3WRD A; 2FKY A; 1D1C A; 3NWN A; 3T0Q A; 1MNE A; 4PJJ A; 5GSZ A; 3B6V A; 1FMV A; 4E7S A; 1F9T A; 4PFP A; 3BFN A; 4DBR A; 1X88 A; 2X7C A; 4ZHI A; 2PG2 A; 1D1B A; 1V8J A; 2X2R A; 2V26 A; 3K5E A; 1F9W A; 2NCD A; 1D0X A; 1GOJ A; 2Y5W A; 3CJO A; 2FL2 A; 1VOM A; 1G8X A; 1I6I A; 3DCB A; 3ZFD A; 4HNA K; 1BR4 A; 4BBG A; 2G1Q A; 2XT3 A; 4ZCA A; 1D0Y A; 5LT3 A; 1MKJ A; 2FME A; 1N6M A; 5LT1 A; 1VFW A; 2FL6 A; 3WPN A; 3L1C A; 4B7B A; 1LVK A; 4AP0 A; 2OWM A; 2GM1 A; 3COB A; 2VAS A; 3K3B A; 2ZFM A; 5HLE A; 2KIN A; 3KIN A; 4PFO A; 3ZFC A; 4A51 A; 1Q0B A; 3X2T A; 1MMG A; 1VFX A; 2VB6 A; 1VFZ A; 1II6 A; 5LT4 A; 4AS7 A; 1I5S A; 2WOG A; 2X7E A; 4H1G A; 4PJM A; 4DBQ A; 1CZ7 A; 1KK7 A; 3DC4 A; 4A5Y A; 4ANJ A; 2HEH A; 2Y65 A; 2ZFK A; 3U06 A; 3L9H A; 1MMD A; 3ZCW A; 2IEH A; 4PK4 A; 1F9U A; 2GRY A; 4A1Z A; 3H4S A; 2ZFJ A; 1D0Z A; 1VFV A; 1YRS A; 4LNU K; 4Y05 A; 1MMN A; 4FRZ A; 4PJL A; 3PXN A; 4E7Z A; 1F9V A; 1BR1 A; 2Q2Y A; #chains in the Genus database with same CATH topology 2UYM A; 2ZFL A; 3LRE A; 4UBF A; 4BXN A; 1LKX A; 3CNZ A; 3KAR A; 3GBJ A; 4A14 A; 2VVG A; 1MMA A; 3KEN A; 5LT0 A; 2UYI A; 4BN2 A; 2MYS A; 2X51 A; 1RY6 A; 5LT2 A; 4A50 A; 4GKR A; 4A28 A; 4ETP A; 1T5C A; 1D1A A; 2ZFI A; 1BG2 A; 1BR2 A; 1FMW A; 2Q2Z A; 4PJN A; 1SDM A; 1V8K A; 2XAE A; 3B6U A; 3HQD A; 2X7D A; 3WRD A; 2FKY A; 1D1C A; 3NWN A; 3T0Q A; 1MNE A; 4PJJ A; 5GSZ A; 3B6V A; 1FMV A; 4E7S A; 1F9T A; 4PFP A; 4GKP A; 3BFN A; 4DBR A; 1X88 A; 2X7C A; 4ZHI A; 4GKQ A; 2PG2 A; 1D1B A; 1V8J A; 2X2R A; 2V26 A; 3K5E A; 1F9W A; 2NCD A; 1D0X A; 1GOJ A; 2Y5W A; 3CJO A; 2FL2 A; 1VOM A; 1G8X A; 1I6I A; 3DCB A; 3ZFD A; 4HNA K; 1BR4 A; 4BBG A; 2G1Q A; 2XT3 A; 4ZCA A; 1D0Y A; 5LT3 A; 1MKJ A; 2FME A; 1N6M A; 5LT1 A; 1VFW A; 2FL6 A; 3WPN A; 3L1C A; 4B7B A; 1LVK A; 4AP0 A; 2OWM A; 2GM1 A; 3COB A; 2VAS A; 3K3B A; 2ZFM A; 5HLE A; 2KIN A; 3KIN A; 4PFO A; 3ZFC A; 4A51 A; 1Q0B A; 3X2T A; 1MMG A; 1VFX A; 2VB6 A; 1VFZ A; 1II6 A; 5LT4 A; 4AS7 A; 1I5S A; 2WOG A; 2X7E A; 4H1G A; 4PJM A; 4DBQ A; 1CZ7 A; 1KK7 A; 3DC4 A; 4A5Y A; 4ANJ A; 2HEH A; 2Y65 A; 2ZFK A; 3U06 A; 3L9H A; 1MMD A; 3ZCW A; 2IEH A; 4PK4 A; 4ETP B; 1F9U A; 2GRY A; 4A1Z A; 3H4S A; 2ZFJ A; 1D0Z A; 1VFV A; 1YRS A; 4LNU K; 4Y05 A; 1MMN A; 4FRZ A; 4PJL A; 2O0A A; 3PXN A; 4E7Z A; 1F9V A; 1BR1 A; 2Q2Y A; #chains in the Genus database with same CATH homology 2UYM A; 2ZFL A; 3LRE A; 4UBF A; 4BXN A; 1LKX A; 3CNZ A; 3KAR A; 3GBJ A; 4A14 A; 2VVG A; 1MMA A; 3KEN A; 5LT0 A; 2UYI A; 4BN2 A; 2MYS A; 2X51 A; 1RY6 A; 5LT2 A; 4A50 A; 4GKR A; 4A28 A; 4ETP A; 1T5C A; 1D1A A; 2ZFI A; 1BG2 A; 1BR2 A; 1FMW A; 2Q2Z A; 4PJN A; 1SDM A; 1V8K A; 2XAE A; 3B6U A; 3HQD A; 2X7D A; 3WRD A; 2FKY A; 1D1C A; 3NWN A; 3T0Q A; 1MNE A; 4PJJ A; 5GSZ A; 3B6V A; 1FMV A; 4E7S A; 1F9T A; 4PFP A; 3BFN A; 4DBR A; 1X88 A; 2X7C A; 4ZHI A; 2PG2 A; 1D1B A; 1V8J A; 2X2R A; 2V26 A; 3K5E A; 1F9W A; 2NCD A; 1D0X A; 1GOJ A; 2Y5W A; 3CJO A; 2FL2 A; 1VOM A; 1G8X A; 1I6I A; 3DCB A; 3ZFD A; 4HNA K; 1BR4 A; 4BBG A; 2G1Q A; 2XT3 A; 4ZCA A; 1D0Y A; 5LT3 A; 1MKJ A; 2FME A; 1N6M A; 5LT1 A; 1VFW A; 2FL6 A; 3WPN A; 3L1C A; 4B7B A; 1LVK A; 4AP0 A; 2OWM A; 2GM1 A; 3COB A; 2VAS A; 3K3B A; 2ZFM A; 5HLE A; 2KIN A; 3KIN A; 4PFO A; 3ZFC A; 4A51 A; 1Q0B A; 3X2T A; 1MMG A; 1VFX A; 2VB6 A; 1VFZ A; 1II6 A; 5LT4 A; 4AS7 A; 1I5S A; 2WOG A; 2X7E A; 4H1G A; 4PJM A; 4DBQ A; 1CZ7 A; 1KK7 A; 3DC4 A; 4A5Y A; 4ANJ A; 2HEH A; 2Y65 A; 2ZFK A; 3U06 A; 3L9H A; 1MMD A; 3ZCW A; 2IEH A; 4PK4 A; 1F9U A; 2GRY A; 4A1Z A; 3H4S A; 2ZFJ A; 1D0Z A; 1VFV A; 1YRS A; 4LNU K; 4Y05 A; 1MMN A; 4FRZ A; 4PJL A; 3PXN A; 4E7Z A; 1F9V A; 1BR1 A; 2Q2Y A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
