3COBA

Structural dynamics of the microtubule binding and regulatory elements in the kinesin-like calmodulin binding protein
Total Genus 115
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
115
sequence length
366
structure length
355
Chain Sequence
KGKIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSSKEVARLKKLVSYWELEEIQDE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Kinesin heavy chain-like protein
publication title Structural dynamics of the microtubule binding and regulatory elements in the kinesin-like calmodulin binding protein.
pubmed doi rcsb
source organism Solanum tuberosum
molecule tags Motor protein
total genus 115
structure length 355
sequence length 366
chains with identical sequence C
ec nomenclature
pdb deposition date 2008-03-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00225 Kinesin Kinesin motor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.850.10 Alpha Beta 3-Layer(aba) Sandwich Kinesin Kinesin motor domain 3cobA00
2X7EA 4BBGA 2ZFJA 4ZCAA 1VFWA 2X51A 1I6IA 4DBRA 2NCDA 1G8XA 1D0YA 5HLEA 3HQDA 1I5SA 1VFZA 3KARA 1MMDA 4A28A 3U06A 1RY6A 2X2RA 2ZFMA 4E7SA 3KINA 4ZHIA 4Y05A 2FL6A 1BR2A 2MYSA 4ETPA 1Q0BA 2PG2A 3L9HA 1D1CA 3NWNA 4BN2A 2ZFLA 3ZCWA 5LT4A 1BR1A 4UBFA 1V8KA 4A50A 4A5YA 1VFXA 2X7DA 1II6A 1X88A 2Q2YA 2X7CA 2Y65A 1MNEA 4E7ZA 2G1QA 4PFPA 3WPNA 1LVKA 2V26A 3GBJA 1VFVA 1D1AA 3CNZA 2Q2ZA 3K3BA 4PK4A 2VB6A 3COBA 4GKRA 1BG2A 3DC4A 3B6VA 2HEHA 1N6MA 3K5EA 2Y5WA 2UYMA 4PFOA 1D1BA 2UYIA 3CJOA 4PJNA 2IEHA 4PJLA 2FL2A 2KINA 4HNAK 1VOMA 3X2TA 1LKXA 4LNUK 2FMEA 2OWMA 4AP0A 3KENA 3LREA 2XT3A 4ANJA 3PXNA 3B6UA 1SDMA 4DBQA 3ZFCA 4AS7A 1MKJA 1YRSA 3ZFDA 4PJMA 1T5CA 2GM1A 4A1ZA 1F9WA 5LT0A 1GOJA 4FRZA 5LT3A 4A51A 1F9TA 5LT1A 1KK7A 1BR4A 2WOGA 5GSZA 3L1CA 2VASA 2FKYA 1V8JA 1FMVA 3H4SA 3T0QA 3BFNA 1MMAA 2GRYA 4PJJA 1F9UA 3WRDA 4H1GA 5LT2A 1D0ZA 3DCBA 1CZ7A 1D0XA 4B7BA 2ZFIA 1MMGA 1FMWA 4BXNA 1F9VA 1MMNA 2ZFKA 4A14A 2XAEA 2VVGA
chains in the Genus database with same CATH superfamily
2X7EA 4BBGA 2ZFJA 4ZCAA 1VFWA 2X51A 1I6IA 4DBRA 2NCDA 1G8XA 1D0YA 5HLEA 3HQDA 1I5SA 1VFZA 3KARA 1MMDA 4A28A 3U06A 1RY6A 2X2RA 2ZFMA 4E7SA 3KINA 4ZHIA 4Y05A 2FL6A 1BR2A 2MYSA 4ETPA 1Q0BA 2PG2A 3L9HA 1D1CA 3NWNA 4BN2A 2ZFLA 3ZCWA 5LT4A 1BR1A 4UBFA 1V8KA 4A50A 4A5YA 1VFXA 2X7DA 1II6A 1X88A 2Q2YA 2X7CA 2Y65A 1MNEA 4E7ZA 2G1QA 2O0AA 4PFPA 3WPNA 1LVKA 2V26A 3GBJA 1VFVA 1D1AA 3CNZA 2Q2ZA 3K3BA 4PK4A 2VB6A 3COBA 4GKRA 1BG2A 3DC4A 3B6VA 2HEHA 1N6MA 3K5EA 2Y5WA 2UYMA 4PFOA 1D1BA 2UYIA 3CJOA 4PJNA 2IEHA 4PJLA 2FL2A 2KINA 4HNAK 1VOMA 3X2TA 1LKXA 4LNUK 2FMEA 2OWMA 4AP0A 3KENA 3LREA 2XT3A 4ANJA 3PXNA 3B6UA 1SDMA 4DBQA 3ZFCA 4AS7A 1MKJA 4GKQA 1YRSA 3ZFDA 4PJMA 1T5CA 2GM1A 4A1ZA 4ETPB 1F9WA 5LT0A 1GOJA 4FRZA 5LT3A 4A51A 1F9TA 5LT1A 1KK7A 1BR4A 2WOGA 5GSZA 3L1CA 2VASA 2FKYA 1V8JA 1FMVA 3H4SA 3T0QA 3BFNA 1MMAA 2GRYA 4GKPA 4PJJA 1F9UA 3WRDA 4H1GA 5LT2A 1D0ZA 3DCBA 1CZ7A 1D0XA 4B7BA 2ZFIA 1MMGA 1FMWA 4BXNA 1F9VA 1MMNA 2ZFKA 4A14A 2XAEA 2VVGA
chains in the Genus database with same CATH topology
2X7EA 4BBGA 2ZFJA 4ZCAA 1VFWA 2X51A 1I6IA 4DBRA 2NCDA 1G8XA 1D0YA 5HLEA 3HQDA 1I5SA 1VFZA 3KARA 1MMDA 4A28A 3U06A 1RY6A 2X2RA 2ZFMA 4E7SA 3KINA 4ZHIA 4Y05A 2FL6A 1BR2A 2MYSA 4ETPA 1Q0BA 2PG2A 3L9HA 1D1CA 3NWNA 4BN2A 2ZFLA 3ZCWA 5LT4A 1BR1A 4UBFA 1V8KA 4A50A 4A5YA 1VFXA 2X7DA 1II6A 1X88A 2Q2YA 2X7CA 2Y65A 1MNEA 4E7ZA 2G1QA 4PFPA 3WPNA 1LVKA 2V26A 3GBJA 1VFVA 1D1AA 3CNZA 2Q2ZA 3K3BA 4PK4A 2VB6A 3COBA 4GKRA 1BG2A 3DC4A 3B6VA 2HEHA 1N6MA 3K5EA 2Y5WA 2UYMA 4PFOA 1D1BA 2UYIA 3CJOA 4PJNA 2IEHA 4PJLA 2FL2A 2KINA 4HNAK 1VOMA 3X2TA 1LKXA 4LNUK 2FMEA 2OWMA 4AP0A 3KENA 3LREA 2XT3A 4ANJA 3PXNA 3B6UA 1SDMA 4DBQA 3ZFCA 4AS7A 1MKJA 1YRSA 3ZFDA 4PJMA 1T5CA 2GM1A 4A1ZA 1F9WA 5LT0A 1GOJA 4FRZA 5LT3A 4A51A 1F9TA 5LT1A 1KK7A 1BR4A 2WOGA 5GSZA 3L1CA 2VASA 2FKYA 1V8JA 1FMVA 3H4SA 3T0QA 3BFNA 1MMAA 2GRYA 4PJJA 1F9UA 3WRDA 4H1GA 5LT2A 1D0ZA 3DCBA 1CZ7A 1D0XA 4B7BA 2ZFIA 1MMGA 1FMWA 4BXNA 1F9VA 1MMNA 2ZFKA 4A14A 2XAEA 2VVGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2X7E A;  4BBG A;  2ZFJ A;  4ZCA A;  1VFW A;  2X51 A;  1I6I A;  4DBR A;  2NCD A;  1G8X A;  1D0Y A;  5HLE A;  3HQD A;  1I5S A;  1VFZ A;  3KAR A;  1MMD A;  4A28 A;  3U06 A;  1RY6 A;  2X2R A;  2ZFM A;  4E7S A;  3KIN A;  4ZHI A;  4Y05 A;  2FL6 A;  1BR2 A;  2MYS A;  4ETP A;  1Q0B A;  2PG2 A;  3L9H A;  1D1C A;  3NWN A;  4BN2 A;  2ZFL A;  3ZCW A;  5LT4 A;  1BR1 A;  4UBF A;  1V8K A;  4A50 A;  4A5Y A;  1VFX A;  2X7D A;  1II6 A;  1X88 A;  2Q2Y A;  2X7C A;  2Y65 A;  1MNE A;  4E7Z A;  2G1Q A;  4PFP A;  3WPN A;  1LVK A;  2V26 A;  3GBJ A;  1VFV A;  1D1A A;  3CNZ A;  2Q2Z A;  3K3B A;  4PK4 A;  2VB6 A;  3COB A;  4GKR A;  1BG2 A;  3DC4 A;  3B6V A;  2HEH A;  1N6M A;  3K5E A;  2Y5W A;  2UYM A;  4PFO A;  1D1B A;  2UYI A;  3CJO A;  4PJN A;  2IEH A;  4PJL A;  2FL2 A;  2KIN A;  4HNA K;  1VOM A;  3X2T A;  1LKX A;  4LNU K;  2FME A;  2OWM A;  4AP0 A;  3KEN A;  3LRE A;  2XT3 A;  4ANJ A;  3PXN A;  3B6U A;  1SDM A;  4DBQ A;  3ZFC A;  4AS7 A;  1MKJ A;  1YRS A;  3ZFD A;  4PJM A;  1T5C A;  2GM1 A;  4A1Z A;  1F9W A;  5LT0 A;  1GOJ A;  4FRZ A;  5LT3 A;  4A51 A;  1F9T A;  5LT1 A;  1KK7 A;  1BR4 A;  2WOG A;  5GSZ A;  3L1C A;  2VAS A;  2FKY A;  1V8J A;  1FMV A;  3H4S A;  3T0Q A;  3BFN A;  1MMA A;  2GRY A;  4PJJ A;  1F9U A;  3WRD A;  4H1G A;  5LT2 A;  1D0Z A;  3DCB A;  1CZ7 A;  1D0X A;  4B7B A;  2ZFI A;  1MMG A;  1FMW A;  4BXN A;  1F9V A;  1MMN A;  2ZFK A;  4A14 A;  2XAE A;  2VVG A; 
#chains in the Genus database with same CATH topology
 2X7E A;  4BBG A;  2ZFJ A;  4ZCA A;  1VFW A;  2X51 A;  1I6I A;  4DBR A;  2NCD A;  1G8X A;  1D0Y A;  5HLE A;  3HQD A;  1I5S A;  1VFZ A;  3KAR A;  1MMD A;  4A28 A;  3U06 A;  1RY6 A;  2X2R A;  2ZFM A;  4E7S A;  3KIN A;  4ZHI A;  4Y05 A;  2FL6 A;  1BR2 A;  2MYS A;  4ETP A;  1Q0B A;  2PG2 A;  3L9H A;  1D1C A;  3NWN A;  4BN2 A;  2ZFL A;  3ZCW A;  5LT4 A;  1BR1 A;  4UBF A;  1V8K A;  4A50 A;  4A5Y A;  1VFX A;  2X7D A;  1II6 A;  1X88 A;  2Q2Y A;  2X7C A;  2Y65 A;  1MNE A;  4E7Z A;  2G1Q A;  2O0A A;  4PFP A;  3WPN A;  1LVK A;  2V26 A;  3GBJ A;  1VFV A;  1D1A A;  3CNZ A;  2Q2Z A;  3K3B A;  4PK4 A;  2VB6 A;  3COB A;  4GKR A;  1BG2 A;  3DC4 A;  3B6V A;  2HEH A;  1N6M A;  3K5E A;  2Y5W A;  2UYM A;  4PFO A;  1D1B A;  2UYI A;  3CJO A;  4PJN A;  2IEH A;  4PJL A;  2FL2 A;  2KIN A;  4HNA K;  1VOM A;  3X2T A;  1LKX A;  4LNU K;  2FME A;  2OWM A;  4AP0 A;  3KEN A;  3LRE A;  2XT3 A;  4ANJ A;  3PXN A;  3B6U A;  1SDM A;  4DBQ A;  3ZFC A;  4AS7 A;  1MKJ A;  4GKQ A;  1YRS A;  3ZFD A;  4PJM A;  1T5C A;  2GM1 A;  4A1Z A;  4ETP B;  1F9W A;  5LT0 A;  1GOJ A;  4FRZ A;  5LT3 A;  4A51 A;  1F9T A;  5LT1 A;  1KK7 A;  1BR4 A;  2WOG A;  5GSZ A;  3L1C A;  2VAS A;  2FKY A;  1V8J A;  1FMV A;  3H4S A;  3T0Q A;  3BFN A;  1MMA A;  2GRY A;  4GKP A;  4PJJ A;  1F9U A;  3WRD A;  4H1G A;  5LT2 A;  1D0Z A;  3DCB A;  1CZ7 A;  1D0X A;  4B7B A;  2ZFI A;  1MMG A;  1FMW A;  4BXN A;  1F9V A;  1MMN A;  2ZFK A;  4A14 A;  2XAE A;  2VVG A; 
#chains in the Genus database with same CATH homology
 2X7E A;  4BBG A;  2ZFJ A;  4ZCA A;  1VFW A;  2X51 A;  1I6I A;  4DBR A;  2NCD A;  1G8X A;  1D0Y A;  5HLE A;  3HQD A;  1I5S A;  1VFZ A;  3KAR A;  1MMD A;  4A28 A;  3U06 A;  1RY6 A;  2X2R A;  2ZFM A;  4E7S A;  3KIN A;  4ZHI A;  4Y05 A;  2FL6 A;  1BR2 A;  2MYS A;  4ETP A;  1Q0B A;  2PG2 A;  3L9H A;  1D1C A;  3NWN A;  4BN2 A;  2ZFL A;  3ZCW A;  5LT4 A;  1BR1 A;  4UBF A;  1V8K A;  4A50 A;  4A5Y A;  1VFX A;  2X7D A;  1II6 A;  1X88 A;  2Q2Y A;  2X7C A;  2Y65 A;  1MNE A;  4E7Z A;  2G1Q A;  4PFP A;  3WPN A;  1LVK A;  2V26 A;  3GBJ A;  1VFV A;  1D1A A;  3CNZ A;  2Q2Z A;  3K3B A;  4PK4 A;  2VB6 A;  3COB A;  4GKR A;  1BG2 A;  3DC4 A;  3B6V A;  2HEH A;  1N6M A;  3K5E A;  2Y5W A;  2UYM A;  4PFO A;  1D1B A;  2UYI A;  3CJO A;  4PJN A;  2IEH A;  4PJL A;  2FL2 A;  2KIN A;  4HNA K;  1VOM A;  3X2T A;  1LKX A;  4LNU K;  2FME A;  2OWM A;  4AP0 A;  3KEN A;  3LRE A;  2XT3 A;  4ANJ A;  3PXN A;  3B6U A;  1SDM A;  4DBQ A;  3ZFC A;  4AS7 A;  1MKJ A;  1YRS A;  3ZFD A;  4PJM A;  1T5C A;  2GM1 A;  4A1Z A;  1F9W A;  5LT0 A;  1GOJ A;  4FRZ A;  5LT3 A;  4A51 A;  1F9T A;  5LT1 A;  1KK7 A;  1BR4 A;  2WOG A;  5GSZ A;  3L1C A;  2VAS A;  2FKY A;  1V8J A;  1FMV A;  3H4S A;  3T0Q A;  3BFN A;  1MMA A;  2GRY A;  4PJJ A;  1F9U A;  3WRD A;  4H1G A;  5LT2 A;  1D0Z A;  3DCB A;  1CZ7 A;  1D0X A;  4B7B A;  2ZFI A;  1MMG A;  1FMW A;  4BXN A;  1F9V A;  1MMN A;  2ZFK A;  4A14 A;  2XAE A;  2VVG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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