3COBA

Structural dynamics of the microtubule binding and regulatory elements in the kinesin-like calmodulin binding protein
Total Genus 115
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
115
sequence length
366
structure length
355
Chain Sequence
b'KGKIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSSKEVARLKKLVSYWELEEIQDE'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Kinesin heavy chain-like protein
publication title Structural dynamics of the microtubule binding and regulatory elements in the kinesin-like calmodulin binding protein.
pubmed doi rcsb
source organism Solanum tuberosum
molecule tags Motor protein
total genus 115
structure length 355
sequence length 366
chains with identical sequence C
ec nomenclature
pdb deposition date 2008-03-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00225 Kinesin Kinesin motor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.850.10 Alpha Beta 3-Layer(aba) Sandwich Kinesin Kinesin motor domain 3cobA00
1I5SA 1BR1A 4A28A 1BR2A 4PFPA 4B7BA 2Y5WA 3CJOA 3NWNA 3CNZA 1V8JA 4A51A 4PJNA 3L9HA 1MNEA 3PXNA 2Q2YA 4BN2A 2X7DA 2GM1A 2UYIA 1CZ7A 1RY6A 4ZHIA 4A50A 2X7EA 3X2TA 2GRYA 5LT3A 3H4SA 5LT1A 3GBJA 3B6UA 2FL6A 3DCBA 2VASA 2HEHA 2ZFMA 4H1GA 1VFXA 1MMNA 4HNAK 1D1CA 2X51A 4UBFA 1F9VA 4DBQA 5GSZA 3T0QA 2VB6A 1VFZA 1D1AA 1MMAA 4GKRA 4PK4A 2IEHA 4PJMA 3U06A 1VOMA 3B6VA 2G1QA 3COBA 2PG2A 2FKYA 4BBGA 1D0ZA 1BG2A 3ZCWA 4E7SA 1D0YA 1Q0BA 1YRSA 2ZFIA 4Y05A 1LVKA 4FRZA 2X2RA 2ZFLA 3LREA 4PJJA 4DBRA 1MMGA 1MKJA 3HQDA 1FMWA 1D0XA 4BXNA 3WRDA 4E7ZA 1G8XA 4ZCAA 2NCDA 3ZFCA 4A5YA 1D1BA 1F9TA 1F9UA 2FMEA 1II6A 2UYMA 1VFVA 3K3BA 1VFWA 1FMVA 2VVGA 3KARA 5LT4A 1X88A 1SDMA 2WOGA 5LT2A 3WPNA 2MYSA 2Q2ZA 4PFOA 1N6MA 4ETPA 5LT0A 1V8KA 2FL2A 2XAEA 3DC4A 1T5CA 3KINA 1I6IA 2OWMA 3K5EA 2ZFKA 3ZFDA 2KINA 3KENA 4A14A 2V26A 2Y65A 4ANJA 4AP0A 3BFNA 4A1ZA 4LNUK 4PJLA 1BR4A 1MMDA 1KK7A 2ZFJA 2X7CA 5HLEA 4AS7A 1LKXA 3L1CA 2XT3A 1F9WA 1GOJA
chains in the Genus database with same CATH superfamily
1I5SA 1BR1A 4A28A 1BR2A 4PFPA 4B7BA 2Y5WA 3CJOA 3NWNA 3CNZA 1V8JA 4A51A 2O0AA 4PJNA 3L9HA 1MNEA 3PXNA 2Q2YA 4BN2A 2X7DA 2GM1A 2UYIA 1CZ7A 1RY6A 4ZHIA 4A50A 2X7EA 3X2TA 2GRYA 5LT3A 3H4SA 5LT1A 3GBJA 3B6UA 2FL6A 3DCBA 2VASA 2HEHA 2ZFMA 4H1GA 1VFXA 1MMNA 4HNAK 1D1CA 2X51A 4UBFA 1F9VA 4DBQA 5GSZA 3T0QA 2VB6A 1VFZA 1D1AA 1MMAA 4GKRA 4PK4A 2IEHA 4PJMA 3U06A 1VOMA 3B6VA 2G1QA 3COBA 2PG2A 2FKYA 4BBGA 1D0ZA 1BG2A 3ZCWA 4E7SA 1D0YA 1Q0BA 1YRSA 2ZFIA 4Y05A 1LVKA 4FRZA 2X2RA 2ZFLA 3LREA 4PJJA 4DBRA 1MMGA 1MKJA 3HQDA 4ETPB 1FMWA 1D0XA 4BXNA 3WRDA 4E7ZA 1G8XA 4ZCAA 2NCDA 3ZFCA 4A5YA 1D1BA 1F9TA 1F9UA 2FMEA 1II6A 2UYMA 1VFVA 3K3BA 1VFWA 1FMVA 2VVGA 3KARA 5LT4A 1X88A 1SDMA 2WOGA 5LT2A 3WPNA 2MYSA 2Q2ZA 4PFOA 1N6MA 4ETPA 5LT0A 1V8KA 2FL2A 2XAEA 3DC4A 1T5CA 3KINA 1I6IA 2OWMA 3K5EA 2ZFKA 3ZFDA 4GKPA 2KINA 3KENA 4A14A 2V26A 2Y65A 4ANJA 4AP0A 3BFNA 4A1ZA 4LNUK 4PJLA 1BR4A 1MMDA 1KK7A 2ZFJA 2X7CA 5HLEA 4GKQA 4AS7A 1LKXA 3L1CA 2XT3A 1F9WA 1GOJA
chains in the Genus database with same CATH topology
1I5SA 1BR1A 4A28A 1BR2A 4PFPA 4B7BA 2Y5WA 3CJOA 3NWNA 3CNZA 1V8JA 4A51A 4PJNA 3L9HA 1MNEA 3PXNA 2Q2YA 4BN2A 2X7DA 2GM1A 2UYIA 1CZ7A 1RY6A 4ZHIA 4A50A 2X7EA 3X2TA 2GRYA 5LT3A 3H4SA 5LT1A 3GBJA 3B6UA 2FL6A 3DCBA 2VASA 2HEHA 2ZFMA 4H1GA 1VFXA 1MMNA 4HNAK 1D1CA 2X51A 4UBFA 1F9VA 4DBQA 5GSZA 3T0QA 2VB6A 1VFZA 1D1AA 1MMAA 4GKRA 4PK4A 2IEHA 4PJMA 3U06A 1VOMA 3B6VA 2G1QA 3COBA 2PG2A 2FKYA 4BBGA 1D0ZA 1BG2A 3ZCWA 4E7SA 1D0YA 1Q0BA 1YRSA 2ZFIA 4Y05A 1LVKA 4FRZA 2X2RA 2ZFLA 3LREA 4PJJA 4DBRA 1MMGA 1MKJA 3HQDA 1FMWA 1D0XA 4BXNA 3WRDA 4E7ZA 1G8XA 4ZCAA 2NCDA 3ZFCA 4A5YA 1D1BA 1F9TA 1F9UA 2FMEA 1II6A 2UYMA 1VFVA 3K3BA 1VFWA 1FMVA 2VVGA 3KARA 5LT4A 1X88A 1SDMA 2WOGA 5LT2A 3WPNA 2MYSA 2Q2ZA 4PFOA 1N6MA 4ETPA 5LT0A 1V8KA 2FL2A 2XAEA 3DC4A 1T5CA 3KINA 1I6IA 2OWMA 3K5EA 2ZFKA 3ZFDA 2KINA 3KENA 4A14A 2V26A 2Y65A 4ANJA 4AP0A 3BFNA 4A1ZA 4LNUK 4PJLA 1BR4A 1MMDA 1KK7A 2ZFJA 2X7CA 5HLEA 4AS7A 1LKXA 3L1CA 2XT3A 1F9WA 1GOJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1I5S A;  1BR1 A;  4A28 A;  1BR2 A;  4PFP A;  4B7B A;  2Y5W A;  3CJO A;  3NWN A;  3CNZ A;  1V8J A;  4A51 A;  4PJN A;  3L9H A;  1MNE A;  3PXN A;  2Q2Y A;  4BN2 A;  2X7D A;  2GM1 A;  2UYI A;  1CZ7 A;  1RY6 A;  4ZHI A;  4A50 A;  2X7E A;  3X2T A;  2GRY A;  5LT3 A;  3H4S A;  5LT1 A;  3GBJ A;  3B6U A;  2FL6 A;  3DCB A;  2VAS A;  2HEH A;  2ZFM A;  4H1G A;  1VFX A;  1MMN A;  4HNA K;  1D1C A;  2X51 A;  4UBF A;  1F9V A;  4DBQ A;  5GSZ A;  3T0Q A;  2VB6 A;  1VFZ A;  1D1A A;  1MMA A;  4GKR A;  4PK4 A;  2IEH A;  4PJM A;  3U06 A;  1VOM A;  3B6V A;  2G1Q A;  3COB A;  2PG2 A;  2FKY A;  4BBG A;  1D0Z A;  1BG2 A;  3ZCW A;  4E7S A;  1D0Y A;  1Q0B A;  1YRS A;  2ZFI A;  4Y05 A;  1LVK A;  4FRZ A;  2X2R A;  2ZFL A;  3LRE A;  4PJJ A;  4DBR A;  1MMG A;  1MKJ A;  3HQD A;  1FMW A;  1D0X A;  4BXN A;  3WRD A;  4E7Z A;  1G8X A;  4ZCA A;  2NCD A;  3ZFC A;  4A5Y A;  1D1B A;  1F9T A;  1F9U A;  2FME A;  1II6 A;  2UYM A;  1VFV A;  3K3B A;  1VFW A;  1FMV A;  2VVG A;  3KAR A;  5LT4 A;  1X88 A;  1SDM A;  2WOG A;  5LT2 A;  3WPN A;  2MYS A;  2Q2Z A;  4PFO A;  1N6M A;  4ETP A;  5LT0 A;  1V8K A;  2FL2 A;  2XAE A;  3DC4 A;  1T5C A;  3KIN A;  1I6I A;  2OWM A;  3K5E A;  2ZFK A;  3ZFD A;  2KIN A;  3KEN A;  4A14 A;  2V26 A;  2Y65 A;  4ANJ A;  4AP0 A;  3BFN A;  4A1Z A;  4LNU K;  4PJL A;  1BR4 A;  1MMD A;  1KK7 A;  2ZFJ A;  2X7C A;  5HLE A;  4AS7 A;  1LKX A;  3L1C A;  2XT3 A;  1F9W A;  1GOJ A; 
#chains in the Genus database with same CATH topology
 1I5S A;  1BR1 A;  4A28 A;  1BR2 A;  4PFP A;  4B7B A;  2Y5W A;  3CJO A;  3NWN A;  3CNZ A;  1V8J A;  4A51 A;  2O0A A;  4PJN A;  3L9H A;  1MNE A;  3PXN A;  2Q2Y A;  4BN2 A;  2X7D A;  2GM1 A;  2UYI A;  1CZ7 A;  1RY6 A;  4ZHI A;  4A50 A;  2X7E A;  3X2T A;  2GRY A;  5LT3 A;  3H4S A;  5LT1 A;  3GBJ A;  3B6U A;  2FL6 A;  3DCB A;  2VAS A;  2HEH A;  2ZFM A;  4H1G A;  1VFX A;  1MMN A;  4HNA K;  1D1C A;  2X51 A;  4UBF A;  1F9V A;  4DBQ A;  5GSZ A;  3T0Q A;  2VB6 A;  1VFZ A;  1D1A A;  1MMA A;  4GKR A;  4PK4 A;  2IEH A;  4PJM A;  3U06 A;  1VOM A;  3B6V A;  2G1Q A;  3COB A;  2PG2 A;  2FKY A;  4BBG A;  1D0Z A;  1BG2 A;  3ZCW A;  4E7S A;  1D0Y A;  1Q0B A;  1YRS A;  2ZFI A;  4Y05 A;  1LVK A;  4FRZ A;  2X2R A;  2ZFL A;  3LRE A;  4PJJ A;  4DBR A;  1MMG A;  1MKJ A;  3HQD A;  4ETP B;  1FMW A;  1D0X A;  4BXN A;  3WRD A;  4E7Z A;  1G8X A;  4ZCA A;  2NCD A;  3ZFC A;  4A5Y A;  1D1B A;  1F9T A;  1F9U A;  2FME A;  1II6 A;  2UYM A;  1VFV A;  3K3B A;  1VFW A;  1FMV A;  2VVG A;  3KAR A;  5LT4 A;  1X88 A;  1SDM A;  2WOG A;  5LT2 A;  3WPN A;  2MYS A;  2Q2Z A;  4PFO A;  1N6M A;  4ETP A;  5LT0 A;  1V8K A;  2FL2 A;  2XAE A;  3DC4 A;  1T5C A;  3KIN A;  1I6I A;  2OWM A;  3K5E A;  2ZFK A;  3ZFD A;  4GKP A;  2KIN A;  3KEN A;  4A14 A;  2V26 A;  2Y65 A;  4ANJ A;  4AP0 A;  3BFN A;  4A1Z A;  4LNU K;  4PJL A;  1BR4 A;  1MMD A;  1KK7 A;  2ZFJ A;  2X7C A;  5HLE A;  4GKQ A;  4AS7 A;  1LKX A;  3L1C A;  2XT3 A;  1F9W A;  1GOJ A; 
#chains in the Genus database with same CATH homology
 1I5S A;  1BR1 A;  4A28 A;  1BR2 A;  4PFP A;  4B7B A;  2Y5W A;  3CJO A;  3NWN A;  3CNZ A;  1V8J A;  4A51 A;  4PJN A;  3L9H A;  1MNE A;  3PXN A;  2Q2Y A;  4BN2 A;  2X7D A;  2GM1 A;  2UYI A;  1CZ7 A;  1RY6 A;  4ZHI A;  4A50 A;  2X7E A;  3X2T A;  2GRY A;  5LT3 A;  3H4S A;  5LT1 A;  3GBJ A;  3B6U A;  2FL6 A;  3DCB A;  2VAS A;  2HEH A;  2ZFM A;  4H1G A;  1VFX A;  1MMN A;  4HNA K;  1D1C A;  2X51 A;  4UBF A;  1F9V A;  4DBQ A;  5GSZ A;  3T0Q A;  2VB6 A;  1VFZ A;  1D1A A;  1MMA A;  4GKR A;  4PK4 A;  2IEH A;  4PJM A;  3U06 A;  1VOM A;  3B6V A;  2G1Q A;  3COB A;  2PG2 A;  2FKY A;  4BBG A;  1D0Z A;  1BG2 A;  3ZCW A;  4E7S A;  1D0Y A;  1Q0B A;  1YRS A;  2ZFI A;  4Y05 A;  1LVK A;  4FRZ A;  2X2R A;  2ZFL A;  3LRE A;  4PJJ A;  4DBR A;  1MMG A;  1MKJ A;  3HQD A;  1FMW A;  1D0X A;  4BXN A;  3WRD A;  4E7Z A;  1G8X A;  4ZCA A;  2NCD A;  3ZFC A;  4A5Y A;  1D1B A;  1F9T A;  1F9U A;  2FME A;  1II6 A;  2UYM A;  1VFV A;  3K3B A;  1VFW A;  1FMV A;  2VVG A;  3KAR A;  5LT4 A;  1X88 A;  1SDM A;  2WOG A;  5LT2 A;  3WPN A;  2MYS A;  2Q2Z A;  4PFO A;  1N6M A;  4ETP A;  5LT0 A;  1V8K A;  2FL2 A;  2XAE A;  3DC4 A;  1T5C A;  3KIN A;  1I6I A;  2OWM A;  3K5E A;  2ZFK A;  3ZFD A;  2KIN A;  3KEN A;  4A14 A;  2V26 A;  2Y65 A;  4ANJ A;  4AP0 A;  3BFN A;  4A1Z A;  4LNU K;  4PJL A;  1BR4 A;  1MMD A;  1KK7 A;  2ZFJ A;  2X7C A;  5HLE A;  4AS7 A;  1LKX A;  3L1C A;  2XT3 A;  1F9W A;  1GOJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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