3KARA

The motor domain of kinesin-like protein kar3, a saccharomyces cerevisiae kinesin-related protein
Total Genus 99
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
99
sequence length
338
structure length
323
Chain Sequence
GNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords KINESIN-LIKE PROTEIN KAR3
publication title X-ray crystal structure of the yeast Kar3 motor domain complexed with Mg.ADP to 2.3 A resolution.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
molecule tags Contractile protein
total genus 99
structure length 323
sequence length 338
ec nomenclature
pdb deposition date 1997-11-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00225 Kinesin Kinesin motor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.850.10 Alpha Beta 3-Layer(aba) Sandwich Kinesin Kinesin motor domain 3karA00
2XAEA 3DC4A 4PFOA 1F9VA 2VVGA 2FL2A 3CNZA 4Y05A 4BBGA 4A5YA 3WRDA 1LVKA 4ZHIA 1D1AA 2OWMA 1MMGA 2X7CA 3L1CA 4A1ZA 4PJNA 2X7EA 4PK4A 3GBJA 3PXNA 3B6UA 1YRSA 3BFNA 2ZFJA 3K5EA 1V8JA 3WPNA 3KINA 2KINA 1VFXA 2X2RA 5HLEA 3H4SA 2X51A 4H1GA 1Q0BA 1T5CA 1VOMA 4E7SA 4E7ZA 1D1BA 1VFZA 5LT0A 1I5SA 3L9HA 4DBQA 1G8XA 3KARA 4DBRA 4PJJA 1BG2A 3ZFCA 2XT3A 2Y5WA 1VFVA 2UYIA 4A51A 2Y65A 2X7DA 1F9UA 1F9TA 1N6MA 2FKYA 2Q2YA 2VB6A 3T0QA 4BN2A 1D1CA 4BXNA 1II6A 2WOGA 1D0XA 1BR2A 3U06A 2G1QA 2FMEA 5LT3A 2ZFIA 4ANJA 2IEHA 1MMDA 4AP0A 4GKRA 4HNAK 1BR1A 1BR4A 1SDMA 4PJLA 1I6IA 1X88A 3KENA 3ZFDA 5LT1A 4A14A 3COBA 3DCBA 2ZFMA 3B6VA 2FL6A 5LT4A 1V8KA 2Q2ZA 1RY6A 4A50A 1F9WA 2GRYA 2MYSA 1MMNA 1MKJA 2HEHA 2ZFKA 4B7BA 5LT2A 4ETPA 5GSZA 4A28A 1FMWA 2NCDA 3CJOA 1GOJA 1CZ7A 1LKXA 4PFPA 3K3BA 4LNUK 3LREA 2ZFLA 1D0ZA 3X2TA 2PG2A 2V26A 4AS7A 4ZCAA 2GM1A 1MMAA 1FMVA 4PJMA 1MNEA 2VASA 2UYMA 4UBFA 1KK7A 4FRZA 3ZCWA 3HQDA 3NWNA 1D0YA 1VFWA
chains in the Genus database with same CATH superfamily
2XAEA 3DC4A 4PFOA 1F9VA 2VVGA 2FL2A 3CNZA 4Y05A 4BBGA 4A5YA 3WRDA 2O0AA 1LVKA 4ZHIA 1D1AA 2OWMA 1MMGA 2X7CA 3L1CA 4A1ZA 4PJNA 2X7EA 4PK4A 3GBJA 3PXNA 3B6UA 4GKQA 1YRSA 3BFNA 2ZFJA 3K5EA 1V8JA 3WPNA 3KINA 2KINA 1VFXA 2X2RA 5HLEA 3H4SA 2X51A 4H1GA 1Q0BA 1T5CA 1VOMA 4E7SA 4E7ZA 1D1BA 1VFZA 5LT0A 1I5SA 3L9HA 4DBQA 1G8XA 3KARA 4DBRA 4PJJA 1BG2A 3ZFCA 2XT3A 2Y5WA 1VFVA 2UYIA 4A51A 2Y65A 2X7DA 1F9UA 1F9TA 1N6MA 2FKYA 2Q2YA 2VB6A 3T0QA 4BN2A 1D1CA 4BXNA 1II6A 2WOGA 1D0XA 1BR2A 3U06A 2G1QA 2FMEA 5LT3A 2ZFIA 4ANJA 2IEHA 1MMDA 4AP0A 4GKRA 4HNAK 1BR1A 1BR4A 1SDMA 4PJLA 1I6IA 1X88A 3KENA 3ZFDA 5LT1A 4A14A 3COBA 3DCBA 2ZFMA 3B6VA 2FL6A 5LT4A 1V8KA 2Q2ZA 1RY6A 4A50A 1F9WA 2GRYA 2MYSA 1MMNA 1MKJA 2HEHA 2ZFKA 4B7BA 5LT2A 4ETPA 5GSZA 4A28A 1FMWA 2NCDA 3CJOA 1GOJA 1CZ7A 1LKXA 4PFPA 4ETPB 3K3BA 4LNUK 3LREA 2ZFLA 1D0ZA 3X2TA 2PG2A 2V26A 4AS7A 4ZCAA 2GM1A 1MMAA 1FMVA 4PJMA 1MNEA 2VASA 2UYMA 4UBFA 4GKPA 1KK7A 4FRZA 3ZCWA 3HQDA 3NWNA 1D0YA 1VFWA
chains in the Genus database with same CATH topology
2XAEA 3DC4A 4PFOA 1F9VA 2VVGA 2FL2A 3CNZA 4Y05A 4BBGA 4A5YA 3WRDA 1LVKA 4ZHIA 1D1AA 2OWMA 1MMGA 2X7CA 3L1CA 4A1ZA 4PJNA 2X7EA 4PK4A 3GBJA 3PXNA 3B6UA 1YRSA 3BFNA 2ZFJA 3K5EA 1V8JA 3WPNA 3KINA 2KINA 1VFXA 2X2RA 5HLEA 3H4SA 2X51A 4H1GA 1Q0BA 1T5CA 1VOMA 4E7SA 4E7ZA 1D1BA 1VFZA 5LT0A 1I5SA 3L9HA 4DBQA 1G8XA 3KARA 4DBRA 4PJJA 1BG2A 3ZFCA 2XT3A 2Y5WA 1VFVA 2UYIA 4A51A 2Y65A 2X7DA 1F9UA 1F9TA 1N6MA 2FKYA 2Q2YA 2VB6A 3T0QA 4BN2A 1D1CA 4BXNA 1II6A 2WOGA 1D0XA 1BR2A 3U06A 2G1QA 2FMEA 5LT3A 2ZFIA 4ANJA 2IEHA 1MMDA 4AP0A 4GKRA 4HNAK 1BR1A 1BR4A 1SDMA 4PJLA 1I6IA 1X88A 3KENA 3ZFDA 5LT1A 4A14A 3COBA 3DCBA 2ZFMA 3B6VA 2FL6A 5LT4A 1V8KA 2Q2ZA 1RY6A 4A50A 1F9WA 2GRYA 2MYSA 1MMNA 1MKJA 2HEHA 2ZFKA 4B7BA 5LT2A 4ETPA 5GSZA 4A28A 1FMWA 2NCDA 3CJOA 1GOJA 1CZ7A 1LKXA 4PFPA 3K3BA 4LNUK 3LREA 2ZFLA 1D0ZA 3X2TA 2PG2A 2V26A 4AS7A 4ZCAA 2GM1A 1MMAA 1FMVA 4PJMA 1MNEA 2VASA 2UYMA 4UBFA 1KK7A 4FRZA 3ZCWA 3HQDA 3NWNA 1D0YA 1VFWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XAE A;  3DC4 A;  4PFO A;  1F9V A;  2VVG A;  2FL2 A;  3CNZ A;  4Y05 A;  4BBG A;  4A5Y A;  3WRD A;  1LVK A;  4ZHI A;  1D1A A;  2OWM A;  1MMG A;  2X7C A;  3L1C A;  4A1Z A;  4PJN A;  2X7E A;  4PK4 A;  3GBJ A;  3PXN A;  3B6U A;  1YRS A;  3BFN A;  2ZFJ A;  3K5E A;  1V8J A;  3WPN A;  3KIN A;  2KIN A;  1VFX A;  2X2R A;  5HLE A;  3H4S A;  2X51 A;  4H1G A;  1Q0B A;  1T5C A;  1VOM A;  4E7S A;  4E7Z A;  1D1B A;  1VFZ A;  5LT0 A;  1I5S A;  3L9H A;  4DBQ A;  1G8X A;  3KAR A;  4DBR A;  4PJJ A;  1BG2 A;  3ZFC A;  2XT3 A;  2Y5W A;  1VFV A;  2UYI A;  4A51 A;  2Y65 A;  2X7D A;  1F9U A;  1F9T A;  1N6M A;  2FKY A;  2Q2Y A;  2VB6 A;  3T0Q A;  4BN2 A;  1D1C A;  4BXN A;  1II6 A;  2WOG A;  1D0X A;  1BR2 A;  3U06 A;  2G1Q A;  2FME A;  5LT3 A;  2ZFI A;  4ANJ A;  2IEH A;  1MMD A;  4AP0 A;  4GKR A;  4HNA K;  1BR1 A;  1BR4 A;  1SDM A;  4PJL A;  1I6I A;  1X88 A;  3KEN A;  3ZFD A;  5LT1 A;  4A14 A;  3COB A;  3DCB A;  2ZFM A;  3B6V A;  2FL6 A;  5LT4 A;  1V8K A;  2Q2Z A;  1RY6 A;  4A50 A;  1F9W A;  2GRY A;  2MYS A;  1MMN A;  1MKJ A;  2HEH A;  2ZFK A;  4B7B A;  5LT2 A;  4ETP A;  5GSZ A;  4A28 A;  1FMW A;  2NCD A;  3CJO A;  1GOJ A;  1CZ7 A;  1LKX A;  4PFP A;  3K3B A;  4LNU K;  3LRE A;  2ZFL A;  1D0Z A;  3X2T A;  2PG2 A;  2V26 A;  4AS7 A;  4ZCA A;  2GM1 A;  1MMA A;  1FMV A;  4PJM A;  1MNE A;  2VAS A;  2UYM A;  4UBF A;  1KK7 A;  4FRZ A;  3ZCW A;  3HQD A;  3NWN A;  1D0Y A;  1VFW A; 
#chains in the Genus database with same CATH topology
 2XAE A;  3DC4 A;  4PFO A;  1F9V A;  2VVG A;  2FL2 A;  3CNZ A;  4Y05 A;  4BBG A;  4A5Y A;  3WRD A;  2O0A A;  1LVK A;  4ZHI A;  1D1A A;  2OWM A;  1MMG A;  2X7C A;  3L1C A;  4A1Z A;  4PJN A;  2X7E A;  4PK4 A;  3GBJ A;  3PXN A;  3B6U A;  4GKQ A;  1YRS A;  3BFN A;  2ZFJ A;  3K5E A;  1V8J A;  3WPN A;  3KIN A;  2KIN A;  1VFX A;  2X2R A;  5HLE A;  3H4S A;  2X51 A;  4H1G A;  1Q0B A;  1T5C A;  1VOM A;  4E7S A;  4E7Z A;  1D1B A;  1VFZ A;  5LT0 A;  1I5S A;  3L9H A;  4DBQ A;  1G8X A;  3KAR A;  4DBR A;  4PJJ A;  1BG2 A;  3ZFC A;  2XT3 A;  2Y5W A;  1VFV A;  2UYI A;  4A51 A;  2Y65 A;  2X7D A;  1F9U A;  1F9T A;  1N6M A;  2FKY A;  2Q2Y A;  2VB6 A;  3T0Q A;  4BN2 A;  1D1C A;  4BXN A;  1II6 A;  2WOG A;  1D0X A;  1BR2 A;  3U06 A;  2G1Q A;  2FME A;  5LT3 A;  2ZFI A;  4ANJ A;  2IEH A;  1MMD A;  4AP0 A;  4GKR A;  4HNA K;  1BR1 A;  1BR4 A;  1SDM A;  4PJL A;  1I6I A;  1X88 A;  3KEN A;  3ZFD A;  5LT1 A;  4A14 A;  3COB A;  3DCB A;  2ZFM A;  3B6V A;  2FL6 A;  5LT4 A;  1V8K A;  2Q2Z A;  1RY6 A;  4A50 A;  1F9W A;  2GRY A;  2MYS A;  1MMN A;  1MKJ A;  2HEH A;  2ZFK A;  4B7B A;  5LT2 A;  4ETP A;  5GSZ A;  4A28 A;  1FMW A;  2NCD A;  3CJO A;  1GOJ A;  1CZ7 A;  1LKX A;  4PFP A;  4ETP B;  3K3B A;  4LNU K;  3LRE A;  2ZFL A;  1D0Z A;  3X2T A;  2PG2 A;  2V26 A;  4AS7 A;  4ZCA A;  2GM1 A;  1MMA A;  1FMV A;  4PJM A;  1MNE A;  2VAS A;  2UYM A;  4UBF A;  4GKP A;  1KK7 A;  4FRZ A;  3ZCW A;  3HQD A;  3NWN A;  1D0Y A;  1VFW A; 
#chains in the Genus database with same CATH homology
 2XAE A;  3DC4 A;  4PFO A;  1F9V A;  2VVG A;  2FL2 A;  3CNZ A;  4Y05 A;  4BBG A;  4A5Y A;  3WRD A;  1LVK A;  4ZHI A;  1D1A A;  2OWM A;  1MMG A;  2X7C A;  3L1C A;  4A1Z A;  4PJN A;  2X7E A;  4PK4 A;  3GBJ A;  3PXN A;  3B6U A;  1YRS A;  3BFN A;  2ZFJ A;  3K5E A;  1V8J A;  3WPN A;  3KIN A;  2KIN A;  1VFX A;  2X2R A;  5HLE A;  3H4S A;  2X51 A;  4H1G A;  1Q0B A;  1T5C A;  1VOM A;  4E7S A;  4E7Z A;  1D1B A;  1VFZ A;  5LT0 A;  1I5S A;  3L9H A;  4DBQ A;  1G8X A;  3KAR A;  4DBR A;  4PJJ A;  1BG2 A;  3ZFC A;  2XT3 A;  2Y5W A;  1VFV A;  2UYI A;  4A51 A;  2Y65 A;  2X7D A;  1F9U A;  1F9T A;  1N6M A;  2FKY A;  2Q2Y A;  2VB6 A;  3T0Q A;  4BN2 A;  1D1C A;  4BXN A;  1II6 A;  2WOG A;  1D0X A;  1BR2 A;  3U06 A;  2G1Q A;  2FME A;  5LT3 A;  2ZFI A;  4ANJ A;  2IEH A;  1MMD A;  4AP0 A;  4GKR A;  4HNA K;  1BR1 A;  1BR4 A;  1SDM A;  4PJL A;  1I6I A;  1X88 A;  3KEN A;  3ZFD A;  5LT1 A;  4A14 A;  3COB A;  3DCB A;  2ZFM A;  3B6V A;  2FL6 A;  5LT4 A;  1V8K A;  2Q2Z A;  1RY6 A;  4A50 A;  1F9W A;  2GRY A;  2MYS A;  1MMN A;  1MKJ A;  2HEH A;  2ZFK A;  4B7B A;  5LT2 A;  4ETP A;  5GSZ A;  4A28 A;  1FMW A;  2NCD A;  3CJO A;  1GOJ A;  1CZ7 A;  1LKX A;  4PFP A;  3K3B A;  4LNU K;  3LRE A;  2ZFL A;  1D0Z A;  3X2T A;  2PG2 A;  2V26 A;  4AS7 A;  4ZCA A;  2GM1 A;  1MMA A;  1FMV A;  4PJM A;  1MNE A;  2VAS A;  2UYM A;  4UBF A;  1KK7 A;  4FRZ A;  3ZCW A;  3HQD A;  3NWN A;  1D0Y A;  1VFW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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