2NCDA

Ncd (non-claret disjunctional) dimer from d. melanogaster
Total Genus 120
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
120
sequence length
368
structure length
358
Chain Sequence
LRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSESPNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords PROTEIN (Kinesin motor NCD)
publication title Direction determination in the minus-end-directed kinesin motor ncd.
pubmed doi rcsb
source organism Drosophila melanogaster
molecule tags Contractile protein
total genus 120
structure length 358
sequence length 368
ec nomenclature
pdb deposition date 1999-06-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00225 Kinesin Kinesin motor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.850.10 Alpha Beta 3-Layer(aba) Sandwich Kinesin Kinesin motor domain 2ncdA00
4A1ZA 2FKYA 2NCDA 2ZFIA 3L1CA 1MMAA 2V26A 1KK7A 1RY6A 3DC4A 3LREA 1I6IA 2Y65A 3KINA 3T0QA 1D0YA 1MKJA 4DBQA 2ZFMA 4PJMA 2HEHA 4B7BA 1BR2A 2WOGA 5LT1A 5LT0A 4PFPA 2UYMA 1V8KA 4FRZA 1II6A 4PJLA 1LVKA 3NWNA 1N6MA 3KARA 4PJNA 4A28A 3H4SA 2X7DA 4ETPA 4E7ZA 3BFNA 1VFVA 4GKRA 1MNEA 2Q2ZA 3B6VA 4PFOA 4AP0A 1SDMA 2X51A 1LKXA 2FL2A 2UYIA 2VASA 4ZCAA 2VB6A 4E7SA 3PXNA 1MMGA 2ZFKA 1YRSA 1VFZA 2ZFJA 3WPNA 2OWMA 1VFWA 1V8JA 3ZFCA 2IEHA 2G1QA 1D1CA 2ZFLA 4ANJA 1I5SA 1VOMA 2XAEA 3K5EA 3GBJA 2Q2YA 4A50A 2XT3A 1X88A 1F9TA 4DBRA 1F9UA 2KINA 4BN2A 2PG2A 5LT4A 2GM1A 1BG2A 3U06A 4BXNA 1Q0BA 1MMNA 3KENA 4A5YA 3DCBA 4AS7A 5GSZA 1D0XA 1BR4A 2X2RA 4PJJA 1F9VA 1F9WA 5HLEA 3ZFDA 2GRYA 1D1BA 2FMEA 3COBA 5LT2A 4ZHIA 4BBGA 4A14A 1FMWA 3B6UA 4UBFA 1CZ7A 1G8XA 1FMVA 3CNZA 2VVGA 1T5CA 3WRDA 3L9HA 1D0ZA 1D1AA 3K3BA 2X7CA 3CJOA 1GOJA 3X2TA 2Y5WA 2X7EA 4Y05A 5LT3A 3ZCWA 1MMDA 1VFXA 4A51A 1BR1A 3HQDA 4H1GA 4LNUK 2FL6A 4HNAK 2MYSA 4PK4A
chains in the Genus database with same CATH superfamily
4A1ZA 2FKYA 2NCDA 2ZFIA 3L1CA 1MMAA 2V26A 1KK7A 1RY6A 2O0AA 3DC4A 3LREA 1I6IA 2Y65A 3KINA 3T0QA 1D0YA 1MKJA 4DBQA 2ZFMA 4PJMA 2HEHA 4B7BA 1BR2A 2WOGA 5LT1A 5LT0A 4PFPA 4GKPA 2UYMA 1V8KA 4FRZA 1II6A 4PJLA 1LVKA 3NWNA 4GKQA 1N6MA 3KARA 4PJNA 4A28A 3H4SA 2X7DA 4ETPA 4E7ZA 3BFNA 1VFVA 4GKRA 1MNEA 2Q2ZA 3B6VA 4PFOA 4AP0A 1SDMA 2X51A 1LKXA 2FL2A 2UYIA 2VASA 4ZCAA 2VB6A 4E7SA 3PXNA 1MMGA 2ZFKA 1YRSA 1VFZA 2ZFJA 3WPNA 2OWMA 1VFWA 1V8JA 3ZFCA 2IEHA 2G1QA 1D1CA 2ZFLA 4ANJA 1I5SA 1VOMA 2XAEA 3K5EA 3GBJA 2Q2YA 4A50A 2XT3A 1X88A 1F9TA 4ETPB 4DBRA 1F9UA 2KINA 4BN2A 2PG2A 5LT4A 2GM1A 1BG2A 3U06A 4BXNA 1Q0BA 1MMNA 3KENA 4A5YA 3DCBA 4AS7A 5GSZA 1D0XA 1BR4A 2X2RA 4PJJA 1F9VA 1F9WA 5HLEA 3ZFDA 2GRYA 1D1BA 2FMEA 3COBA 5LT2A 4ZHIA 4BBGA 4A14A 1FMWA 3B6UA 4UBFA 1CZ7A 1G8XA 1FMVA 3CNZA 2VVGA 1T5CA 3WRDA 3L9HA 1D0ZA 1D1AA 3K3BA 2X7CA 3CJOA 1GOJA 3X2TA 2Y5WA 2X7EA 4Y05A 5LT3A 3ZCWA 1MMDA 1VFXA 4A51A 1BR1A 3HQDA 4H1GA 4LNUK 2FL6A 4HNAK 2MYSA 4PK4A
chains in the Genus database with same CATH topology
4A1ZA 2FKYA 2NCDA 2ZFIA 3L1CA 1MMAA 2V26A 1KK7A 1RY6A 3DC4A 3LREA 1I6IA 2Y65A 3KINA 3T0QA 1D0YA 1MKJA 4DBQA 2ZFMA 4PJMA 2HEHA 4B7BA 1BR2A 2WOGA 5LT1A 5LT0A 4PFPA 2UYMA 1V8KA 4FRZA 1II6A 4PJLA 1LVKA 3NWNA 1N6MA 3KARA 4PJNA 4A28A 3H4SA 2X7DA 4ETPA 4E7ZA 3BFNA 1VFVA 4GKRA 1MNEA 2Q2ZA 3B6VA 4PFOA 4AP0A 1SDMA 2X51A 1LKXA 2FL2A 2UYIA 2VASA 4ZCAA 2VB6A 4E7SA 3PXNA 1MMGA 2ZFKA 1YRSA 1VFZA 2ZFJA 3WPNA 2OWMA 1VFWA 1V8JA 3ZFCA 2IEHA 2G1QA 1D1CA 2ZFLA 4ANJA 1I5SA 1VOMA 2XAEA 3K5EA 3GBJA 2Q2YA 4A50A 2XT3A 1X88A 1F9TA 4DBRA 1F9UA 2KINA 4BN2A 2PG2A 5LT4A 2GM1A 1BG2A 3U06A 4BXNA 1Q0BA 1MMNA 3KENA 4A5YA 3DCBA 4AS7A 5GSZA 1D0XA 1BR4A 2X2RA 4PJJA 1F9VA 1F9WA 5HLEA 3ZFDA 2GRYA 1D1BA 2FMEA 3COBA 5LT2A 4ZHIA 4BBGA 4A14A 1FMWA 3B6UA 4UBFA 1CZ7A 1G8XA 1FMVA 3CNZA 2VVGA 1T5CA 3WRDA 3L9HA 1D0ZA 1D1AA 3K3BA 2X7CA 3CJOA 1GOJA 3X2TA 2Y5WA 2X7EA 4Y05A 5LT3A 3ZCWA 1MMDA 1VFXA 4A51A 1BR1A 3HQDA 4H1GA 4LNUK 2FL6A 4HNAK 2MYSA 4PK4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4A1Z A;  2FKY A;  2NCD A;  2ZFI A;  3L1C A;  1MMA A;  2V26 A;  1KK7 A;  1RY6 A;  3DC4 A;  3LRE A;  1I6I A;  2Y65 A;  3KIN A;  3T0Q A;  1D0Y A;  1MKJ A;  4DBQ A;  2ZFM A;  4PJM A;  2HEH A;  4B7B A;  1BR2 A;  2WOG A;  5LT1 A;  5LT0 A;  4PFP A;  2UYM A;  1V8K A;  4FRZ A;  1II6 A;  4PJL A;  1LVK A;  3NWN A;  1N6M A;  3KAR A;  4PJN A;  4A28 A;  3H4S A;  2X7D A;  4ETP A;  4E7Z A;  3BFN A;  1VFV A;  4GKR A;  1MNE A;  2Q2Z A;  3B6V A;  4PFO A;  4AP0 A;  1SDM A;  2X51 A;  1LKX A;  2FL2 A;  2UYI A;  2VAS A;  4ZCA A;  2VB6 A;  4E7S A;  3PXN A;  1MMG A;  2ZFK A;  1YRS A;  1VFZ A;  2ZFJ A;  3WPN A;  2OWM A;  1VFW A;  1V8J A;  3ZFC A;  2IEH A;  2G1Q A;  1D1C A;  2ZFL A;  4ANJ A;  1I5S A;  1VOM A;  2XAE A;  3K5E A;  3GBJ A;  2Q2Y A;  4A50 A;  2XT3 A;  1X88 A;  1F9T A;  4DBR A;  1F9U A;  2KIN A;  4BN2 A;  2PG2 A;  5LT4 A;  2GM1 A;  1BG2 A;  3U06 A;  4BXN A;  1Q0B A;  1MMN A;  3KEN A;  4A5Y A;  3DCB A;  4AS7 A;  5GSZ A;  1D0X A;  1BR4 A;  2X2R A;  4PJJ A;  1F9V A;  1F9W A;  5HLE A;  3ZFD A;  2GRY A;  1D1B A;  2FME A;  3COB A;  5LT2 A;  4ZHI A;  4BBG A;  4A14 A;  1FMW A;  3B6U A;  4UBF A;  1CZ7 A;  1G8X A;  1FMV A;  3CNZ A;  2VVG A;  1T5C A;  3WRD A;  3L9H A;  1D0Z A;  1D1A A;  3K3B A;  2X7C A;  3CJO A;  1GOJ A;  3X2T A;  2Y5W A;  2X7E A;  4Y05 A;  5LT3 A;  3ZCW A;  1MMD A;  1VFX A;  4A51 A;  1BR1 A;  3HQD A;  4H1G A;  4LNU K;  2FL6 A;  4HNA K;  2MYS A;  4PK4 A; 
#chains in the Genus database with same CATH topology
 4A1Z A;  2FKY A;  2NCD A;  2ZFI A;  3L1C A;  1MMA A;  2V26 A;  1KK7 A;  1RY6 A;  2O0A A;  3DC4 A;  3LRE A;  1I6I A;  2Y65 A;  3KIN A;  3T0Q A;  1D0Y A;  1MKJ A;  4DBQ A;  2ZFM A;  4PJM A;  2HEH A;  4B7B A;  1BR2 A;  2WOG A;  5LT1 A;  5LT0 A;  4PFP A;  4GKP A;  2UYM A;  1V8K A;  4FRZ A;  1II6 A;  4PJL A;  1LVK A;  3NWN A;  4GKQ A;  1N6M A;  3KAR A;  4PJN A;  4A28 A;  3H4S A;  2X7D A;  4ETP A;  4E7Z A;  3BFN A;  1VFV A;  4GKR A;  1MNE A;  2Q2Z A;  3B6V A;  4PFO A;  4AP0 A;  1SDM A;  2X51 A;  1LKX A;  2FL2 A;  2UYI A;  2VAS A;  4ZCA A;  2VB6 A;  4E7S A;  3PXN A;  1MMG A;  2ZFK A;  1YRS A;  1VFZ A;  2ZFJ A;  3WPN A;  2OWM A;  1VFW A;  1V8J A;  3ZFC A;  2IEH A;  2G1Q A;  1D1C A;  2ZFL A;  4ANJ A;  1I5S A;  1VOM A;  2XAE A;  3K5E A;  3GBJ A;  2Q2Y A;  4A50 A;  2XT3 A;  1X88 A;  1F9T A;  4ETP B;  4DBR A;  1F9U A;  2KIN A;  4BN2 A;  2PG2 A;  5LT4 A;  2GM1 A;  1BG2 A;  3U06 A;  4BXN A;  1Q0B A;  1MMN A;  3KEN A;  4A5Y A;  3DCB A;  4AS7 A;  5GSZ A;  1D0X A;  1BR4 A;  2X2R A;  4PJJ A;  1F9V A;  1F9W A;  5HLE A;  3ZFD A;  2GRY A;  1D1B A;  2FME A;  3COB A;  5LT2 A;  4ZHI A;  4BBG A;  4A14 A;  1FMW A;  3B6U A;  4UBF A;  1CZ7 A;  1G8X A;  1FMV A;  3CNZ A;  2VVG A;  1T5C A;  3WRD A;  3L9H A;  1D0Z A;  1D1A A;  3K3B A;  2X7C A;  3CJO A;  1GOJ A;  3X2T A;  2Y5W A;  2X7E A;  4Y05 A;  5LT3 A;  3ZCW A;  1MMD A;  1VFX A;  4A51 A;  1BR1 A;  3HQD A;  4H1G A;  4LNU K;  2FL6 A;  4HNA K;  2MYS A;  4PK4 A; 
#chains in the Genus database with same CATH homology
 4A1Z A;  2FKY A;  2NCD A;  2ZFI A;  3L1C A;  1MMA A;  2V26 A;  1KK7 A;  1RY6 A;  3DC4 A;  3LRE A;  1I6I A;  2Y65 A;  3KIN A;  3T0Q A;  1D0Y A;  1MKJ A;  4DBQ A;  2ZFM A;  4PJM A;  2HEH A;  4B7B A;  1BR2 A;  2WOG A;  5LT1 A;  5LT0 A;  4PFP A;  2UYM A;  1V8K A;  4FRZ A;  1II6 A;  4PJL A;  1LVK A;  3NWN A;  1N6M A;  3KAR A;  4PJN A;  4A28 A;  3H4S A;  2X7D A;  4ETP A;  4E7Z A;  3BFN A;  1VFV A;  4GKR A;  1MNE A;  2Q2Z A;  3B6V A;  4PFO A;  4AP0 A;  1SDM A;  2X51 A;  1LKX A;  2FL2 A;  2UYI A;  2VAS A;  4ZCA A;  2VB6 A;  4E7S A;  3PXN A;  1MMG A;  2ZFK A;  1YRS A;  1VFZ A;  2ZFJ A;  3WPN A;  2OWM A;  1VFW A;  1V8J A;  3ZFC A;  2IEH A;  2G1Q A;  1D1C A;  2ZFL A;  4ANJ A;  1I5S A;  1VOM A;  2XAE A;  3K5E A;  3GBJ A;  2Q2Y A;  4A50 A;  2XT3 A;  1X88 A;  1F9T A;  4DBR A;  1F9U A;  2KIN A;  4BN2 A;  2PG2 A;  5LT4 A;  2GM1 A;  1BG2 A;  3U06 A;  4BXN A;  1Q0B A;  1MMN A;  3KEN A;  4A5Y A;  3DCB A;  4AS7 A;  5GSZ A;  1D0X A;  1BR4 A;  2X2R A;  4PJJ A;  1F9V A;  1F9W A;  5HLE A;  3ZFD A;  2GRY A;  1D1B A;  2FME A;  3COB A;  5LT2 A;  4ZHI A;  4BBG A;  4A14 A;  1FMW A;  3B6U A;  4UBF A;  1CZ7 A;  1G8X A;  1FMV A;  3CNZ A;  2VVG A;  1T5C A;  3WRD A;  3L9H A;  1D0Z A;  1D1A A;  3K3B A;  2X7C A;  3CJO A;  1GOJ A;  3X2T A;  2Y5W A;  2X7E A;  4Y05 A;  5LT3 A;  3ZCW A;  1MMD A;  1VFX A;  4A51 A;  1BR1 A;  3HQD A;  4H1G A;  4LNU K;  2FL6 A;  4HNA K;  2MYS A;  4PK4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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