2NCDA

Ncd (non-claret disjunctional) dimer from d. melanogaster
Total Genus 120
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
120
sequence length
368
structure length
358
Chain Sequence
b'LRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSESPNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSC'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords PROTEIN (Kinesin motor NCD)
publication title Direction determination in the minus-end-directed kinesin motor ncd.
pubmed doi rcsb
source organism Drosophila melanogaster
molecule tags Contractile protein
total genus 120
structure length 358
sequence length 368
ec nomenclature
pdb deposition date 1999-06-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00225 Kinesin Kinesin motor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.850.10 Alpha Beta 3-Layer(aba) Sandwich Kinesin Kinesin motor domain 2ncdA00
2WOGA 1I6IA 3KARA 4PJNA 2NCDA 4BN2A 2HEHA 2ZFMA 3WPNA 2FL6A 1SDMA 1LVKA 2X51A 4ZCAA 2GRYA 2ZFIA 4A14A 4A1ZA 2V26A 5HLEA 1YRSA 1D0XA 4UBFA 1F9UA 2G1QA 3B6VA 2VASA 3NWNA 4BBGA 2FL2A 4PJLA 1MMDA 2X2RA 4ANJA 2FKYA 4AS7A 4DBRA 4PJMA 1KK7A 5LT0A 4HNAK 1MMGA 2Q2YA 1LKXA 5LT2A 2XT3A 1Q0BA 2XAEA 3DCBA 4AP0A 2Y65A 1MKJA 2ZFLA 3BFNA 1D1BA 2VB6A 3K3BA 3ZCWA 1BR4A 4B7BA 4A5YA 1II6A 4E7SA 4A28A 4FRZA 1I5SA 3K5EA 2X7EA 4PFOA 5LT1A 3HQDA 3LREA 4Y05A 1CZ7A 3B6UA 1VFVA 1GOJA 3DC4A 3CJOA 2KINA 4PK4A 1D0ZA 2FMEA 4A51A 2UYMA 4A50A 1FMVA 2MYSA 1D1AA 1F9TA 1VFXA 1MMNA 1X88A 4ETPA 5LT4A 3H4SA 3ZFDA 2PG2A 4LNUK 2Q2ZA 3ZFCA 4PJJA 3KINA 2UYIA 3COBA 1MMAA 3CNZA 2X7DA 4ZHIA 3X2TA 3GBJA 3L9HA 1VFZA 1D0YA 2GM1A 2Y5WA 3KENA 2IEHA 4H1GA 1F9WA 3PXNA 4BXNA 1G8XA 3T0QA 1VOMA 3WRDA 5LT3A 1N6MA 3L1CA 1D1CA 4GKRA 1MNEA 2X7CA 1BR1A 3U06A 1VFWA 1F9VA 1RY6A 1FMWA 1V8JA 2ZFJA 2OWMA 1T5CA 2VVGA 4E7ZA 2ZFKA 1V8KA 1BG2A 4PFPA 1BR2A 5GSZA 4DBQA
chains in the Genus database with same CATH superfamily
2WOGA 1I6IA 3KARA 4PJNA 2NCDA 4BN2A 2HEHA 2ZFMA 3WPNA 2FL6A 1SDMA 1LVKA 2X51A 4ZCAA 2GRYA 2ZFIA 4A14A 4GKPA 4A1ZA 2V26A 5HLEA 1YRSA 1D0XA 4UBFA 1F9UA 2G1QA 3B6VA 2VASA 3NWNA 4BBGA 2FL2A 4PJLA 1MMDA 2X2RA 4ANJA 2FKYA 4AS7A 4DBRA 4PJMA 1KK7A 5LT0A 4HNAK 1MMGA 2Q2YA 1LKXA 5LT2A 2XT3A 1Q0BA 2XAEA 3DCBA 4AP0A 2Y65A 1MKJA 2ZFLA 3BFNA 1D1BA 2VB6A 3K3BA 3ZCWA 1BR4A 4B7BA 4A5YA 1II6A 4E7SA 4A28A 4FRZA 1I5SA 3K5EA 2X7EA 4PFOA 5LT1A 3HQDA 3LREA 4Y05A 1CZ7A 3B6UA 1VFVA 4GKQA 1GOJA 3DC4A 3CJOA 2KINA 4PK4A 1D0ZA 2FMEA 4A51A 2UYMA 2O0AA 4A50A 4ETPB 1FMVA 2MYSA 1D1AA 1F9TA 1VFXA 1MMNA 1X88A 4ETPA 5LT4A 3H4SA 3ZFDA 2PG2A 4LNUK 2Q2ZA 3ZFCA 4PJJA 3KINA 2UYIA 3COBA 1MMAA 3CNZA 2X7DA 4ZHIA 3X2TA 3GBJA 3L9HA 1VFZA 1D0YA 2GM1A 2Y5WA 3KENA 2IEHA 4H1GA 1F9WA 3PXNA 4BXNA 1G8XA 3T0QA 1VOMA 3WRDA 5LT3A 1N6MA 3L1CA 1D1CA 4GKRA 1MNEA 2X7CA 1BR1A 3U06A 1VFWA 1F9VA 1RY6A 1FMWA 1V8JA 2ZFJA 2OWMA 1T5CA 2VVGA 4E7ZA 2ZFKA 1V8KA 1BG2A 4PFPA 1BR2A 5GSZA 4DBQA
chains in the Genus database with same CATH topology
2WOGA 1I6IA 3KARA 4PJNA 2NCDA 4BN2A 2HEHA 2ZFMA 3WPNA 2FL6A 1SDMA 1LVKA 2X51A 4ZCAA 2GRYA 2ZFIA 4A14A 4A1ZA 2V26A 5HLEA 1YRSA 1D0XA 4UBFA 1F9UA 2G1QA 3B6VA 2VASA 3NWNA 4BBGA 2FL2A 4PJLA 1MMDA 2X2RA 4ANJA 2FKYA 4AS7A 4DBRA 4PJMA 1KK7A 5LT0A 4HNAK 1MMGA 2Q2YA 1LKXA 5LT2A 2XT3A 1Q0BA 2XAEA 3DCBA 4AP0A 2Y65A 1MKJA 2ZFLA 3BFNA 1D1BA 2VB6A 3K3BA 3ZCWA 1BR4A 4B7BA 4A5YA 1II6A 4E7SA 4A28A 4FRZA 1I5SA 3K5EA 2X7EA 4PFOA 5LT1A 3HQDA 3LREA 4Y05A 1CZ7A 3B6UA 1VFVA 1GOJA 3DC4A 3CJOA 2KINA 4PK4A 1D0ZA 2FMEA 4A51A 2UYMA 4A50A 1FMVA 2MYSA 1D1AA 1F9TA 1VFXA 1MMNA 1X88A 4ETPA 5LT4A 3H4SA 3ZFDA 2PG2A 4LNUK 2Q2ZA 3ZFCA 4PJJA 3KINA 2UYIA 3COBA 1MMAA 3CNZA 2X7DA 4ZHIA 3X2TA 3GBJA 3L9HA 1VFZA 1D0YA 2GM1A 2Y5WA 3KENA 2IEHA 4H1GA 1F9WA 3PXNA 4BXNA 1G8XA 3T0QA 1VOMA 3WRDA 5LT3A 1N6MA 3L1CA 1D1CA 4GKRA 1MNEA 2X7CA 1BR1A 3U06A 1VFWA 1F9VA 1RY6A 1FMWA 1V8JA 2ZFJA 2OWMA 1T5CA 2VVGA 4E7ZA 2ZFKA 1V8KA 1BG2A 4PFPA 1BR2A 5GSZA 4DBQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2WOG A;  1I6I A;  3KAR A;  4PJN A;  2NCD A;  4BN2 A;  2HEH A;  2ZFM A;  3WPN A;  2FL6 A;  1SDM A;  1LVK A;  2X51 A;  4ZCA A;  2GRY A;  2ZFI A;  4A14 A;  4A1Z A;  2V26 A;  5HLE A;  1YRS A;  1D0X A;  4UBF A;  1F9U A;  2G1Q A;  3B6V A;  2VAS A;  3NWN A;  4BBG A;  2FL2 A;  4PJL A;  1MMD A;  2X2R A;  4ANJ A;  2FKY A;  4AS7 A;  4DBR A;  4PJM A;  1KK7 A;  5LT0 A;  4HNA K;  1MMG A;  2Q2Y A;  1LKX A;  5LT2 A;  2XT3 A;  1Q0B A;  2XAE A;  3DCB A;  4AP0 A;  2Y65 A;  1MKJ A;  2ZFL A;  3BFN A;  1D1B A;  2VB6 A;  3K3B A;  3ZCW A;  1BR4 A;  4B7B A;  4A5Y A;  1II6 A;  4E7S A;  4A28 A;  4FRZ A;  1I5S A;  3K5E A;  2X7E A;  4PFO A;  5LT1 A;  3HQD A;  3LRE A;  4Y05 A;  1CZ7 A;  3B6U A;  1VFV A;  1GOJ A;  3DC4 A;  3CJO A;  2KIN A;  4PK4 A;  1D0Z A;  2FME A;  4A51 A;  2UYM A;  4A50 A;  1FMV A;  2MYS A;  1D1A A;  1F9T A;  1VFX A;  1MMN A;  1X88 A;  4ETP A;  5LT4 A;  3H4S A;  3ZFD A;  2PG2 A;  4LNU K;  2Q2Z A;  3ZFC A;  4PJJ A;  3KIN A;  2UYI A;  3COB A;  1MMA A;  3CNZ A;  2X7D A;  4ZHI A;  3X2T A;  3GBJ A;  3L9H A;  1VFZ A;  1D0Y A;  2GM1 A;  2Y5W A;  3KEN A;  2IEH A;  4H1G A;  1F9W A;  3PXN A;  4BXN A;  1G8X A;  3T0Q A;  1VOM A;  3WRD A;  5LT3 A;  1N6M A;  3L1C A;  1D1C A;  4GKR A;  1MNE A;  2X7C A;  1BR1 A;  3U06 A;  1VFW A;  1F9V A;  1RY6 A;  1FMW A;  1V8J A;  2ZFJ A;  2OWM A;  1T5C A;  2VVG A;  4E7Z A;  2ZFK A;  1V8K A;  1BG2 A;  4PFP A;  1BR2 A;  5GSZ A;  4DBQ A; 
#chains in the Genus database with same CATH topology
 2WOG A;  1I6I A;  3KAR A;  4PJN A;  2NCD A;  4BN2 A;  2HEH A;  2ZFM A;  3WPN A;  2FL6 A;  1SDM A;  1LVK A;  2X51 A;  4ZCA A;  2GRY A;  2ZFI A;  4A14 A;  4GKP A;  4A1Z A;  2V26 A;  5HLE A;  1YRS A;  1D0X A;  4UBF A;  1F9U A;  2G1Q A;  3B6V A;  2VAS A;  3NWN A;  4BBG A;  2FL2 A;  4PJL A;  1MMD A;  2X2R A;  4ANJ A;  2FKY A;  4AS7 A;  4DBR A;  4PJM A;  1KK7 A;  5LT0 A;  4HNA K;  1MMG A;  2Q2Y A;  1LKX A;  5LT2 A;  2XT3 A;  1Q0B A;  2XAE A;  3DCB A;  4AP0 A;  2Y65 A;  1MKJ A;  2ZFL A;  3BFN A;  1D1B A;  2VB6 A;  3K3B A;  3ZCW A;  1BR4 A;  4B7B A;  4A5Y A;  1II6 A;  4E7S A;  4A28 A;  4FRZ A;  1I5S A;  3K5E A;  2X7E A;  4PFO A;  5LT1 A;  3HQD A;  3LRE A;  4Y05 A;  1CZ7 A;  3B6U A;  1VFV A;  4GKQ A;  1GOJ A;  3DC4 A;  3CJO A;  2KIN A;  4PK4 A;  1D0Z A;  2FME A;  4A51 A;  2UYM A;  2O0A A;  4A50 A;  4ETP B;  1FMV A;  2MYS A;  1D1A A;  1F9T A;  1VFX A;  1MMN A;  1X88 A;  4ETP A;  5LT4 A;  3H4S A;  3ZFD A;  2PG2 A;  4LNU K;  2Q2Z A;  3ZFC A;  4PJJ A;  3KIN A;  2UYI A;  3COB A;  1MMA A;  3CNZ A;  2X7D A;  4ZHI A;  3X2T A;  3GBJ A;  3L9H A;  1VFZ A;  1D0Y A;  2GM1 A;  2Y5W A;  3KEN A;  2IEH A;  4H1G A;  1F9W A;  3PXN A;  4BXN A;  1G8X A;  3T0Q A;  1VOM A;  3WRD A;  5LT3 A;  1N6M A;  3L1C A;  1D1C A;  4GKR A;  1MNE A;  2X7C A;  1BR1 A;  3U06 A;  1VFW A;  1F9V A;  1RY6 A;  1FMW A;  1V8J A;  2ZFJ A;  2OWM A;  1T5C A;  2VVG A;  4E7Z A;  2ZFK A;  1V8K A;  1BG2 A;  4PFP A;  1BR2 A;  5GSZ A;  4DBQ A; 
#chains in the Genus database with same CATH homology
 2WOG A;  1I6I A;  3KAR A;  4PJN A;  2NCD A;  4BN2 A;  2HEH A;  2ZFM A;  3WPN A;  2FL6 A;  1SDM A;  1LVK A;  2X51 A;  4ZCA A;  2GRY A;  2ZFI A;  4A14 A;  4A1Z A;  2V26 A;  5HLE A;  1YRS A;  1D0X A;  4UBF A;  1F9U A;  2G1Q A;  3B6V A;  2VAS A;  3NWN A;  4BBG A;  2FL2 A;  4PJL A;  1MMD A;  2X2R A;  4ANJ A;  2FKY A;  4AS7 A;  4DBR A;  4PJM A;  1KK7 A;  5LT0 A;  4HNA K;  1MMG A;  2Q2Y A;  1LKX A;  5LT2 A;  2XT3 A;  1Q0B A;  2XAE A;  3DCB A;  4AP0 A;  2Y65 A;  1MKJ A;  2ZFL A;  3BFN A;  1D1B A;  2VB6 A;  3K3B A;  3ZCW A;  1BR4 A;  4B7B A;  4A5Y A;  1II6 A;  4E7S A;  4A28 A;  4FRZ A;  1I5S A;  3K5E A;  2X7E A;  4PFO A;  5LT1 A;  3HQD A;  3LRE A;  4Y05 A;  1CZ7 A;  3B6U A;  1VFV A;  1GOJ A;  3DC4 A;  3CJO A;  2KIN A;  4PK4 A;  1D0Z A;  2FME A;  4A51 A;  2UYM A;  4A50 A;  1FMV A;  2MYS A;  1D1A A;  1F9T A;  1VFX A;  1MMN A;  1X88 A;  4ETP A;  5LT4 A;  3H4S A;  3ZFD A;  2PG2 A;  4LNU K;  2Q2Z A;  3ZFC A;  4PJJ A;  3KIN A;  2UYI A;  3COB A;  1MMA A;  3CNZ A;  2X7D A;  4ZHI A;  3X2T A;  3GBJ A;  3L9H A;  1VFZ A;  1D0Y A;  2GM1 A;  2Y5W A;  3KEN A;  2IEH A;  4H1G A;  1F9W A;  3PXN A;  4BXN A;  1G8X A;  3T0Q A;  1VOM A;  3WRD A;  5LT3 A;  1N6M A;  3L1C A;  1D1C A;  4GKR A;  1MNE A;  2X7C A;  1BR1 A;  3U06 A;  1VFW A;  1F9V A;  1RY6 A;  1FMW A;  1V8J A;  2ZFJ A;  2OWM A;  1T5C A;  2VVG A;  4E7Z A;  2ZFK A;  1V8K A;  1BG2 A;  4PFP A;  1BR2 A;  5GSZ A;  4DBQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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