2VVGA

Crystal structure of the g.intestinalis kinesin 2 gikin2a motor domain
Total Genus 108
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
108
sequence length
347
structure length
304
Chain Sequence
b'DNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPRTFTFDAVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKNNTKLPLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRSSRSHSIFMVRIECSEVEVIRVGKLNLVDLAGSERKINLSLSALGLVISKLVEGATHIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNKPRINEDPKDAQI'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords KINESIN-2
publication title High-Resolution Crystal Structure and in Vivo Function of a Kinesin-2 Homologue in Giardia Intestinalis.
pubmed doi rcsb
molecule tags Motor protein
total genus 108
structure length 304
sequence length 347
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-06-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00225 Kinesin Kinesin motor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.850.10 Alpha Beta 3-Layer(aba) Sandwich Kinesin Kinesin motor domain 2vvgA00
4A50A 2OWMA 4B7BA 2IEHA 1F9TA 1MMGA 1YRSA 2Y65A 1I6IA 2G1QA 3KENA 4H1GA 1MMAA 4ZHIA 4FRZA 2V26A 3ZFCA 2KINA 3GBJA 1VOMA 2GM1A 1F9VA 2NCDA 2WOGA 3DCBA 1N6MA 1F9WA 4ZCAA 2X7EA 4PFOA 4PJMA 4PFPA 3X2TA 5LT4A 3BFNA 3B6VA 3WRDA 3ZCWA 1D1BA 4BBGA 1SDMA 2HEHA 1FMWA 2X2RA 4HNAK 3ZFDA 2ZFKA 1BR4A 1V8KA 3HQDA 1LKXA 2XAEA 2GRYA 1I5SA 1BR1A 3CNZA 4PJNA 2Q2ZA 2MYSA 4LNUK 2VB6A 2Q2YA 3KINA 2X7DA 1KK7A 2X51A 4AP0A 5LT1A 5LT2A 4A28A 3L9HA 2PG2A 3B6UA 1VFXA 1MMNA 1GOJA 4E7SA 4Y05A 4BN2A 1D0ZA 2X7CA 1FMVA 1F9UA 1MKJA 3PXNA 2ZFLA 4BXNA 1V8JA 2FL2A 2UYIA 4A1ZA 1VFZA 1CZ7A 3KARA 4E7ZA 3CJOA 2ZFJA 4A51A 1VFVA 1BG2A 1II6A 3DC4A 5LT0A 2FMEA 1Q0BA 2UYMA 4AS7A 1RY6A 3COBA 4A14A 2VASA 3NWNA 3K5EA 3U06A 3WPNA 1MNEA 2ZFIA 4DBRA 2FL6A 1D0YA 4ANJA 1X88A 2VVGA 4PK4A 1T5CA 1D1CA 4PJLA 1D0XA 1LVKA 2FKYA 2Y5WA 1BR2A 5GSZA 2XT3A 1G8XA 3T0QA 4DBQA 3L1CA 3K3BA 1VFWA 3H4SA 2ZFMA 1MMDA 4GKRA 3LREA 4PJJA 4UBFA 5HLEA 5LT3A 1D1AA 4ETPA 4A5YA
chains in the Genus database with same CATH superfamily
4A50A 2OWMA 4B7BA 2IEHA 1F9TA 1MMGA 1YRSA 2Y65A 1I6IA 2G1QA 3KENA 4GKPA 4H1GA 1MMAA 4ZHIA 4FRZA 2V26A 3ZFCA 2KINA 3GBJA 1VOMA 2GM1A 1F9VA 2NCDA 2WOGA 3DCBA 1N6MA 4GKQA 1F9WA 4ZCAA 2X7EA 4PFOA 4PJMA 4PFPA 3X2TA 5LT4A 3BFNA 3B6VA 3WRDA 3ZCWA 1D1BA 4BBGA 1SDMA 2HEHA 1FMWA 2X2RA 4HNAK 3ZFDA 2ZFKA 1BR4A 1V8KA 3HQDA 1LKXA 2XAEA 2O0AA 2GRYA 1I5SA 1BR1A 3CNZA 4PJNA 2Q2ZA 2MYSA 4LNUK 2VB6A 2Q2YA 3KINA 2X7DA 1KK7A 2X51A 4AP0A 5LT1A 5LT2A 4A28A 3L9HA 2PG2A 3B6UA 1VFXA 1MMNA 1GOJA 4E7SA 4Y05A 4BN2A 1D0ZA 2X7CA 1FMVA 1F9UA 1MKJA 3PXNA 2ZFLA 4BXNA 1V8JA 2FL2A 2UYIA 4A1ZA 1VFZA 1CZ7A 3KARA 4E7ZA 3CJOA 2ZFJA 4A51A 1VFVA 1BG2A 1II6A 3DC4A 5LT0A 2FMEA 1Q0BA 2UYMA 4AS7A 1RY6A 3COBA 4A14A 2VASA 3NWNA 3K5EA 4ETPB 3U06A 3WPNA 1MNEA 2ZFIA 4DBRA 2FL6A 1D0YA 4ANJA 1X88A 2VVGA 4PK4A 1T5CA 1D1CA 4PJLA 1D0XA 1LVKA 2FKYA 2Y5WA 1BR2A 5GSZA 2XT3A 1G8XA 3T0QA 4DBQA 3L1CA 3K3BA 1VFWA 3H4SA 2ZFMA 1MMDA 4GKRA 3LREA 4PJJA 4UBFA 5HLEA 5LT3A 1D1AA 4ETPA 4A5YA
chains in the Genus database with same CATH topology
4A50A 2OWMA 4B7BA 2IEHA 1F9TA 1MMGA 1YRSA 2Y65A 1I6IA 2G1QA 3KENA 4H1GA 1MMAA 4ZHIA 4FRZA 2V26A 3ZFCA 2KINA 3GBJA 1VOMA 2GM1A 1F9VA 2NCDA 2WOGA 3DCBA 1N6MA 1F9WA 4ZCAA 2X7EA 4PFOA 4PJMA 4PFPA 3X2TA 5LT4A 3BFNA 3B6VA 3WRDA 3ZCWA 1D1BA 4BBGA 1SDMA 2HEHA 1FMWA 2X2RA 4HNAK 3ZFDA 2ZFKA 1BR4A 1V8KA 3HQDA 1LKXA 2XAEA 2GRYA 1I5SA 1BR1A 3CNZA 4PJNA 2Q2ZA 2MYSA 4LNUK 2VB6A 2Q2YA 3KINA 2X7DA 1KK7A 2X51A 4AP0A 5LT1A 5LT2A 4A28A 3L9HA 2PG2A 3B6UA 1VFXA 1MMNA 1GOJA 4E7SA 4Y05A 4BN2A 1D0ZA 2X7CA 1FMVA 1F9UA 1MKJA 3PXNA 2ZFLA 4BXNA 1V8JA 2FL2A 2UYIA 4A1ZA 1VFZA 1CZ7A 3KARA 4E7ZA 3CJOA 2ZFJA 4A51A 1VFVA 1BG2A 1II6A 3DC4A 5LT0A 2FMEA 1Q0BA 2UYMA 4AS7A 1RY6A 3COBA 4A14A 2VASA 3NWNA 3K5EA 3U06A 3WPNA 1MNEA 2ZFIA 4DBRA 2FL6A 1D0YA 4ANJA 1X88A 2VVGA 4PK4A 1T5CA 1D1CA 4PJLA 1D0XA 1LVKA 2FKYA 2Y5WA 1BR2A 5GSZA 2XT3A 1G8XA 3T0QA 4DBQA 3L1CA 3K3BA 1VFWA 3H4SA 2ZFMA 1MMDA 4GKRA 3LREA 4PJJA 4UBFA 5HLEA 5LT3A 1D1AA 4ETPA 4A5YA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4A50 A;  2OWM A;  4B7B A;  2IEH A;  1F9T A;  1MMG A;  1YRS A;  2Y65 A;  1I6I A;  2G1Q A;  3KEN A;  4H1G A;  1MMA A;  4ZHI A;  4FRZ A;  2V26 A;  3ZFC A;  2KIN A;  3GBJ A;  1VOM A;  2GM1 A;  1F9V A;  2NCD A;  2WOG A;  3DCB A;  1N6M A;  1F9W A;  4ZCA A;  2X7E A;  4PFO A;  4PJM A;  4PFP A;  3X2T A;  5LT4 A;  3BFN A;  3B6V A;  3WRD A;  3ZCW A;  1D1B A;  4BBG A;  1SDM A;  2HEH A;  1FMW A;  2X2R A;  4HNA K;  3ZFD A;  2ZFK A;  1BR4 A;  1V8K A;  3HQD A;  1LKX A;  2XAE A;  2GRY A;  1I5S A;  1BR1 A;  3CNZ A;  4PJN A;  2Q2Z A;  2MYS A;  4LNU K;  2VB6 A;  2Q2Y A;  3KIN A;  2X7D A;  1KK7 A;  2X51 A;  4AP0 A;  5LT1 A;  5LT2 A;  4A28 A;  3L9H A;  2PG2 A;  3B6U A;  1VFX A;  1MMN A;  1GOJ A;  4E7S A;  4Y05 A;  4BN2 A;  1D0Z A;  2X7C A;  1FMV A;  1F9U A;  1MKJ A;  3PXN A;  2ZFL A;  4BXN A;  1V8J A;  2FL2 A;  2UYI A;  4A1Z A;  1VFZ A;  1CZ7 A;  3KAR A;  4E7Z A;  3CJO A;  2ZFJ A;  4A51 A;  1VFV A;  1BG2 A;  1II6 A;  3DC4 A;  5LT0 A;  2FME A;  1Q0B A;  2UYM A;  4AS7 A;  1RY6 A;  3COB A;  4A14 A;  2VAS A;  3NWN A;  3K5E A;  3U06 A;  3WPN A;  1MNE A;  2ZFI A;  4DBR A;  2FL6 A;  1D0Y A;  4ANJ A;  1X88 A;  2VVG A;  4PK4 A;  1T5C A;  1D1C A;  4PJL A;  1D0X A;  1LVK A;  2FKY A;  2Y5W A;  1BR2 A;  5GSZ A;  2XT3 A;  1G8X A;  3T0Q A;  4DBQ A;  3L1C A;  3K3B A;  1VFW A;  3H4S A;  2ZFM A;  1MMD A;  4GKR A;  3LRE A;  4PJJ A;  4UBF A;  5HLE A;  5LT3 A;  1D1A A;  4ETP A;  4A5Y A; 
#chains in the Genus database with same CATH topology
 4A50 A;  2OWM A;  4B7B A;  2IEH A;  1F9T A;  1MMG A;  1YRS A;  2Y65 A;  1I6I A;  2G1Q A;  3KEN A;  4GKP A;  4H1G A;  1MMA A;  4ZHI A;  4FRZ A;  2V26 A;  3ZFC A;  2KIN A;  3GBJ A;  1VOM A;  2GM1 A;  1F9V A;  2NCD A;  2WOG A;  3DCB A;  1N6M A;  4GKQ A;  1F9W A;  4ZCA A;  2X7E A;  4PFO A;  4PJM A;  4PFP A;  3X2T A;  5LT4 A;  3BFN A;  3B6V A;  3WRD A;  3ZCW A;  1D1B A;  4BBG A;  1SDM A;  2HEH A;  1FMW A;  2X2R A;  4HNA K;  3ZFD A;  2ZFK A;  1BR4 A;  1V8K A;  3HQD A;  1LKX A;  2XAE A;  2O0A A;  2GRY A;  1I5S A;  1BR1 A;  3CNZ A;  4PJN A;  2Q2Z A;  2MYS A;  4LNU K;  2VB6 A;  2Q2Y A;  3KIN A;  2X7D A;  1KK7 A;  2X51 A;  4AP0 A;  5LT1 A;  5LT2 A;  4A28 A;  3L9H A;  2PG2 A;  3B6U A;  1VFX A;  1MMN A;  1GOJ A;  4E7S A;  4Y05 A;  4BN2 A;  1D0Z A;  2X7C A;  1FMV A;  1F9U A;  1MKJ A;  3PXN A;  2ZFL A;  4BXN A;  1V8J A;  2FL2 A;  2UYI A;  4A1Z A;  1VFZ A;  1CZ7 A;  3KAR A;  4E7Z A;  3CJO A;  2ZFJ A;  4A51 A;  1VFV A;  1BG2 A;  1II6 A;  3DC4 A;  5LT0 A;  2FME A;  1Q0B A;  2UYM A;  4AS7 A;  1RY6 A;  3COB A;  4A14 A;  2VAS A;  3NWN A;  3K5E A;  4ETP B;  3U06 A;  3WPN A;  1MNE A;  2ZFI A;  4DBR A;  2FL6 A;  1D0Y A;  4ANJ A;  1X88 A;  2VVG A;  4PK4 A;  1T5C A;  1D1C A;  4PJL A;  1D0X A;  1LVK A;  2FKY A;  2Y5W A;  1BR2 A;  5GSZ A;  2XT3 A;  1G8X A;  3T0Q A;  4DBQ A;  3L1C A;  3K3B A;  1VFW A;  3H4S A;  2ZFM A;  1MMD A;  4GKR A;  3LRE A;  4PJJ A;  4UBF A;  5HLE A;  5LT3 A;  1D1A A;  4ETP A;  4A5Y A; 
#chains in the Genus database with same CATH homology
 4A50 A;  2OWM A;  4B7B A;  2IEH A;  1F9T A;  1MMG A;  1YRS A;  2Y65 A;  1I6I A;  2G1Q A;  3KEN A;  4H1G A;  1MMA A;  4ZHI A;  4FRZ A;  2V26 A;  3ZFC A;  2KIN A;  3GBJ A;  1VOM A;  2GM1 A;  1F9V A;  2NCD A;  2WOG A;  3DCB A;  1N6M A;  1F9W A;  4ZCA A;  2X7E A;  4PFO A;  4PJM A;  4PFP A;  3X2T A;  5LT4 A;  3BFN A;  3B6V A;  3WRD A;  3ZCW A;  1D1B A;  4BBG A;  1SDM A;  2HEH A;  1FMW A;  2X2R A;  4HNA K;  3ZFD A;  2ZFK A;  1BR4 A;  1V8K A;  3HQD A;  1LKX A;  2XAE A;  2GRY A;  1I5S A;  1BR1 A;  3CNZ A;  4PJN A;  2Q2Z A;  2MYS A;  4LNU K;  2VB6 A;  2Q2Y A;  3KIN A;  2X7D A;  1KK7 A;  2X51 A;  4AP0 A;  5LT1 A;  5LT2 A;  4A28 A;  3L9H A;  2PG2 A;  3B6U A;  1VFX A;  1MMN A;  1GOJ A;  4E7S A;  4Y05 A;  4BN2 A;  1D0Z A;  2X7C A;  1FMV A;  1F9U A;  1MKJ A;  3PXN A;  2ZFL A;  4BXN A;  1V8J A;  2FL2 A;  2UYI A;  4A1Z A;  1VFZ A;  1CZ7 A;  3KAR A;  4E7Z A;  3CJO A;  2ZFJ A;  4A51 A;  1VFV A;  1BG2 A;  1II6 A;  3DC4 A;  5LT0 A;  2FME A;  1Q0B A;  2UYM A;  4AS7 A;  1RY6 A;  3COB A;  4A14 A;  2VAS A;  3NWN A;  3K5E A;  3U06 A;  3WPN A;  1MNE A;  2ZFI A;  4DBR A;  2FL6 A;  1D0Y A;  4ANJ A;  1X88 A;  2VVG A;  4PK4 A;  1T5C A;  1D1C A;  4PJL A;  1D0X A;  1LVK A;  2FKY A;  2Y5W A;  1BR2 A;  5GSZ A;  2XT3 A;  1G8X A;  3T0Q A;  4DBQ A;  3L1C A;  3K3B A;  1VFW A;  3H4S A;  2ZFM A;  1MMD A;  4GKR A;  3LRE A;  4PJJ A;  4UBF A;  5HLE A;  5LT3 A;  1D1A A;  4ETP A;  4A5Y A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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