2VVGA

Crystal structure of the g.intestinalis kinesin 2 gikin2a motor domain
Total Genus 108
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
108
sequence length
347
structure length
304
Chain Sequence
DNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPRTFTFDAVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKNNTKLPLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRSSRSHSIFMVRIECSEVEVIRVGKLNLVDLAGSERKINLSLSALGLVISKLVEGATHIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNKPRINEDPKDAQI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords KINESIN-2
publication title High-Resolution Crystal Structure and in Vivo Function of a Kinesin-2 Homologue in Giardia Intestinalis.
pubmed doi rcsb
molecule tags Motor protein
total genus 108
structure length 304
sequence length 347
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-06-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00225 Kinesin Kinesin motor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.850.10 Alpha Beta 3-Layer(aba) Sandwich Kinesin Kinesin motor domain 2vvgA00
2VB6A 1VFVA 2FKYA 4B7BA 1MMAA 1LKXA 1BR4A 2NCDA 1D1CA 1YRSA 1VFXA 3T0QA 3GBJA 4PFOA 2OWMA 1D0YA 2PG2A 5LT4A 1GOJA 3PXNA 2XT3A 4A1ZA 4E7SA 3ZFCA 3KARA 2FL6A 4PK4A 3K5EA 3WRDA 2GM1A 3NWNA 4ANJA 4BXNA 1MMNA 4LNUK 1KK7A 4Y05A 1VOMA 2FMEA 2ZFIA 1D0ZA 3H4SA 4A51A 1V8KA 1BR2A 3DC4A 3KENA 3LREA 4ETPA 5LT0A 3L9HA 4FRZA 1MNEA 4ZCAA 3K3BA 4BN2A 1F9WA 2Q2ZA 2X7CA 3KINA 4ZHIA 5LT1A 3L1CA 2FL2A 4A5YA 1D1AA 5HLEA 1Q0BA 4PJNA 2IEHA 4BBGA 4PJLA 1I5SA 1LVKA 2MYSA 2X7DA 4UBFA 2VASA 1T5CA 1CZ7A 1G8XA 2G1QA 1SDMA 1VFZA 3COBA 1F9UA 2Y5WA 1MKJA 4PFPA 3BFNA 4GKRA 2ZFMA 1V8JA 4AS7A 1D0XA 2ZFKA 3ZFDA 4HNAK 2WOGA 4H1GA 1D1BA 1II6A 2Y65A 4A50A 4A14A 2KINA 1X88A 2GRYA 2X7EA 3U06A 1I6IA 4E7ZA 1BR1A 2UYIA 4PJMA 1BG2A 1F9TA 5LT3A 5LT2A 2UYMA 3WPNA 2X51A 2V26A 4A28A 2ZFJA 1RY6A 2VVGA 3CJOA 1MMGA 4AP0A 4DBRA 1VFWA 1N6MA 2X2RA 5GSZA 3CNZA 1FMWA 4PJJA 1FMVA 3B6VA 3B6UA 1F9VA 3DCBA 3ZCWA 2ZFLA 4DBQA 2Q2YA 2XAEA 3X2TA 1MMDA 3HQDA 2HEHA
chains in the Genus database with same CATH superfamily
2VB6A 1VFVA 2FKYA 4B7BA 1MMAA 1LKXA 1BR4A 2NCDA 1D1CA 1YRSA 1VFXA 3T0QA 3GBJA 4PFOA 2OWMA 1D0YA 2O0AA 2PG2A 5LT4A 1GOJA 3PXNA 2XT3A 4A1ZA 4E7SA 4GKQA 3ZFCA 3KARA 2FL6A 4PK4A 3K5EA 3WRDA 2GM1A 3NWNA 4ANJA 4BXNA 1MMNA 4LNUK 1KK7A 4Y05A 1VOMA 2FMEA 2ZFIA 1D0ZA 3H4SA 4A51A 1V8KA 1BR2A 3DC4A 3KENA 3LREA 4ETPA 5LT0A 3L9HA 4FRZA 1MNEA 4ZCAA 3K3BA 4BN2A 1F9WA 2Q2ZA 2X7CA 4ETPB 3KINA 4ZHIA 5LT1A 3L1CA 2FL2A 4A5YA 1D1AA 5HLEA 1Q0BA 4PJNA 2IEHA 4BBGA 4PJLA 1I5SA 1LVKA 2MYSA 2X7DA 4UBFA 2VASA 1T5CA 1CZ7A 1G8XA 2G1QA 1SDMA 1VFZA 3COBA 1F9UA 2Y5WA 1MKJA 4PFPA 3BFNA 4GKRA 2ZFMA 1V8JA 4AS7A 1D0XA 2ZFKA 3ZFDA 4HNAK 2WOGA 4H1GA 1D1BA 1II6A 2Y65A 4A50A 4A14A 2KINA 1X88A 2GRYA 2X7EA 3U06A 1I6IA 4E7ZA 1BR1A 2UYIA 4PJMA 1BG2A 1F9TA 5LT3A 5LT2A 2UYMA 3WPNA 2X51A 2V26A 4A28A 2ZFJA 1RY6A 4GKPA 2VVGA 3CJOA 1MMGA 4AP0A 4DBRA 1VFWA 1N6MA 2X2RA 5GSZA 3CNZA 1FMWA 4PJJA 1FMVA 3B6VA 3B6UA 1F9VA 3DCBA 3ZCWA 2ZFLA 4DBQA 2Q2YA 2XAEA 3X2TA 1MMDA 3HQDA 2HEHA
chains in the Genus database with same CATH topology
2VB6A 1VFVA 2FKYA 4B7BA 1MMAA 1LKXA 1BR4A 2NCDA 1D1CA 1YRSA 1VFXA 3T0QA 3GBJA 4PFOA 2OWMA 1D0YA 2PG2A 5LT4A 1GOJA 3PXNA 2XT3A 4A1ZA 4E7SA 3ZFCA 3KARA 2FL6A 4PK4A 3K5EA 3WRDA 2GM1A 3NWNA 4ANJA 4BXNA 1MMNA 4LNUK 1KK7A 4Y05A 1VOMA 2FMEA 2ZFIA 1D0ZA 3H4SA 4A51A 1V8KA 1BR2A 3DC4A 3KENA 3LREA 4ETPA 5LT0A 3L9HA 4FRZA 1MNEA 4ZCAA 3K3BA 4BN2A 1F9WA 2Q2ZA 2X7CA 3KINA 4ZHIA 5LT1A 3L1CA 2FL2A 4A5YA 1D1AA 5HLEA 1Q0BA 4PJNA 2IEHA 4BBGA 4PJLA 1I5SA 1LVKA 2MYSA 2X7DA 4UBFA 2VASA 1T5CA 1CZ7A 1G8XA 2G1QA 1SDMA 1VFZA 3COBA 1F9UA 2Y5WA 1MKJA 4PFPA 3BFNA 4GKRA 2ZFMA 1V8JA 4AS7A 1D0XA 2ZFKA 3ZFDA 4HNAK 2WOGA 4H1GA 1D1BA 1II6A 2Y65A 4A50A 4A14A 2KINA 1X88A 2GRYA 2X7EA 3U06A 1I6IA 4E7ZA 1BR1A 2UYIA 4PJMA 1BG2A 1F9TA 5LT3A 5LT2A 2UYMA 3WPNA 2X51A 2V26A 4A28A 2ZFJA 1RY6A 2VVGA 3CJOA 1MMGA 4AP0A 4DBRA 1VFWA 1N6MA 2X2RA 5GSZA 3CNZA 1FMWA 4PJJA 1FMVA 3B6VA 3B6UA 1F9VA 3DCBA 3ZCWA 2ZFLA 4DBQA 2Q2YA 2XAEA 3X2TA 1MMDA 3HQDA 2HEHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VB6 A;  1VFV A;  2FKY A;  4B7B A;  1MMA A;  1LKX A;  1BR4 A;  2NCD A;  1D1C A;  1YRS A;  1VFX A;  3T0Q A;  3GBJ A;  4PFO A;  2OWM A;  1D0Y A;  2PG2 A;  5LT4 A;  1GOJ A;  3PXN A;  2XT3 A;  4A1Z A;  4E7S A;  3ZFC A;  3KAR A;  2FL6 A;  4PK4 A;  3K5E A;  3WRD A;  2GM1 A;  3NWN A;  4ANJ A;  4BXN A;  1MMN A;  4LNU K;  1KK7 A;  4Y05 A;  1VOM A;  2FME A;  2ZFI A;  1D0Z A;  3H4S A;  4A51 A;  1V8K A;  1BR2 A;  3DC4 A;  3KEN A;  3LRE A;  4ETP A;  5LT0 A;  3L9H A;  4FRZ A;  1MNE A;  4ZCA A;  3K3B A;  4BN2 A;  1F9W A;  2Q2Z A;  2X7C A;  3KIN A;  4ZHI A;  5LT1 A;  3L1C A;  2FL2 A;  4A5Y A;  1D1A A;  5HLE A;  1Q0B A;  4PJN A;  2IEH A;  4BBG A;  4PJL A;  1I5S A;  1LVK A;  2MYS A;  2X7D A;  4UBF A;  2VAS A;  1T5C A;  1CZ7 A;  1G8X A;  2G1Q A;  1SDM A;  1VFZ A;  3COB A;  1F9U A;  2Y5W A;  1MKJ A;  4PFP A;  3BFN A;  4GKR A;  2ZFM A;  1V8J A;  4AS7 A;  1D0X A;  2ZFK A;  3ZFD A;  4HNA K;  2WOG A;  4H1G A;  1D1B A;  1II6 A;  2Y65 A;  4A50 A;  4A14 A;  2KIN A;  1X88 A;  2GRY A;  2X7E A;  3U06 A;  1I6I A;  4E7Z A;  1BR1 A;  2UYI A;  4PJM A;  1BG2 A;  1F9T A;  5LT3 A;  5LT2 A;  2UYM A;  3WPN A;  2X51 A;  2V26 A;  4A28 A;  2ZFJ A;  1RY6 A;  2VVG A;  3CJO A;  1MMG A;  4AP0 A;  4DBR A;  1VFW A;  1N6M A;  2X2R A;  5GSZ A;  3CNZ A;  1FMW A;  4PJJ A;  1FMV A;  3B6V A;  3B6U A;  1F9V A;  3DCB A;  3ZCW A;  2ZFL A;  4DBQ A;  2Q2Y A;  2XAE A;  3X2T A;  1MMD A;  3HQD A;  2HEH A; 
#chains in the Genus database with same CATH topology
 2VB6 A;  1VFV A;  2FKY A;  4B7B A;  1MMA A;  1LKX A;  1BR4 A;  2NCD A;  1D1C A;  1YRS A;  1VFX A;  3T0Q A;  3GBJ A;  4PFO A;  2OWM A;  1D0Y A;  2O0A A;  2PG2 A;  5LT4 A;  1GOJ A;  3PXN A;  2XT3 A;  4A1Z A;  4E7S A;  4GKQ A;  3ZFC A;  3KAR A;  2FL6 A;  4PK4 A;  3K5E A;  3WRD A;  2GM1 A;  3NWN A;  4ANJ A;  4BXN A;  1MMN A;  4LNU K;  1KK7 A;  4Y05 A;  1VOM A;  2FME A;  2ZFI A;  1D0Z A;  3H4S A;  4A51 A;  1V8K A;  1BR2 A;  3DC4 A;  3KEN A;  3LRE A;  4ETP A;  5LT0 A;  3L9H A;  4FRZ A;  1MNE A;  4ZCA A;  3K3B A;  4BN2 A;  1F9W A;  2Q2Z A;  2X7C A;  4ETP B;  3KIN A;  4ZHI A;  5LT1 A;  3L1C A;  2FL2 A;  4A5Y A;  1D1A A;  5HLE A;  1Q0B A;  4PJN A;  2IEH A;  4BBG A;  4PJL A;  1I5S A;  1LVK A;  2MYS A;  2X7D A;  4UBF A;  2VAS A;  1T5C A;  1CZ7 A;  1G8X A;  2G1Q A;  1SDM A;  1VFZ A;  3COB A;  1F9U A;  2Y5W A;  1MKJ A;  4PFP A;  3BFN A;  4GKR A;  2ZFM A;  1V8J A;  4AS7 A;  1D0X A;  2ZFK A;  3ZFD A;  4HNA K;  2WOG A;  4H1G A;  1D1B A;  1II6 A;  2Y65 A;  4A50 A;  4A14 A;  2KIN A;  1X88 A;  2GRY A;  2X7E A;  3U06 A;  1I6I A;  4E7Z A;  1BR1 A;  2UYI A;  4PJM A;  1BG2 A;  1F9T A;  5LT3 A;  5LT2 A;  2UYM A;  3WPN A;  2X51 A;  2V26 A;  4A28 A;  2ZFJ A;  1RY6 A;  4GKP A;  2VVG A;  3CJO A;  1MMG A;  4AP0 A;  4DBR A;  1VFW A;  1N6M A;  2X2R A;  5GSZ A;  3CNZ A;  1FMW A;  4PJJ A;  1FMV A;  3B6V A;  3B6U A;  1F9V A;  3DCB A;  3ZCW A;  2ZFL A;  4DBQ A;  2Q2Y A;  2XAE A;  3X2T A;  1MMD A;  3HQD A;  2HEH A; 
#chains in the Genus database with same CATH homology
 2VB6 A;  1VFV A;  2FKY A;  4B7B A;  1MMA A;  1LKX A;  1BR4 A;  2NCD A;  1D1C A;  1YRS A;  1VFX A;  3T0Q A;  3GBJ A;  4PFO A;  2OWM A;  1D0Y A;  2PG2 A;  5LT4 A;  1GOJ A;  3PXN A;  2XT3 A;  4A1Z A;  4E7S A;  3ZFC A;  3KAR A;  2FL6 A;  4PK4 A;  3K5E A;  3WRD A;  2GM1 A;  3NWN A;  4ANJ A;  4BXN A;  1MMN A;  4LNU K;  1KK7 A;  4Y05 A;  1VOM A;  2FME A;  2ZFI A;  1D0Z A;  3H4S A;  4A51 A;  1V8K A;  1BR2 A;  3DC4 A;  3KEN A;  3LRE A;  4ETP A;  5LT0 A;  3L9H A;  4FRZ A;  1MNE A;  4ZCA A;  3K3B A;  4BN2 A;  1F9W A;  2Q2Z A;  2X7C A;  3KIN A;  4ZHI A;  5LT1 A;  3L1C A;  2FL2 A;  4A5Y A;  1D1A A;  5HLE A;  1Q0B A;  4PJN A;  2IEH A;  4BBG A;  4PJL A;  1I5S A;  1LVK A;  2MYS A;  2X7D A;  4UBF A;  2VAS A;  1T5C A;  1CZ7 A;  1G8X A;  2G1Q A;  1SDM A;  1VFZ A;  3COB A;  1F9U A;  2Y5W A;  1MKJ A;  4PFP A;  3BFN A;  4GKR A;  2ZFM A;  1V8J A;  4AS7 A;  1D0X A;  2ZFK A;  3ZFD A;  4HNA K;  2WOG A;  4H1G A;  1D1B A;  1II6 A;  2Y65 A;  4A50 A;  4A14 A;  2KIN A;  1X88 A;  2GRY A;  2X7E A;  3U06 A;  1I6I A;  4E7Z A;  1BR1 A;  2UYI A;  4PJM A;  1BG2 A;  1F9T A;  5LT3 A;  5LT2 A;  2UYM A;  3WPN A;  2X51 A;  2V26 A;  4A28 A;  2ZFJ A;  1RY6 A;  2VVG A;  3CJO A;  1MMG A;  4AP0 A;  4DBR A;  1VFW A;  1N6M A;  2X2R A;  5GSZ A;  3CNZ A;  1FMW A;  4PJJ A;  1FMV A;  3B6V A;  3B6U A;  1F9V A;  3DCB A;  3ZCW A;  2ZFL A;  4DBQ A;  2Q2Y A;  2XAE A;  3X2T A;  1MMD A;  3HQD A;  2HEH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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