5LT3A

Nucleotide-free kinesin-1 motor domain t87a mutant, p1 crystal form
Total Genus 99
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
99
sequence length
319
structure length
307
Chain Sequence
b'ESNIKVMCRFRPLNSEVNRGDKYIAKFQGEDTVVIASKPYAFDRVFQSSTSQEQVYNDAAKKIVKDVLEGYNGTIFAYGQASSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGATERFVSSPDEVMDTIDEGKSNRHVAVHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNARTTIVICCSPSSYNESETKSTLLFGQRAKT'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Kinesin-1 heavy chain
publication title The structural switch of nucleotide-free kinesin.
pubmed doi rcsb
source organism Homo sapiens
molecule tags Motor protein
total genus 99
structure length 307
sequence length 319
chains with identical sequence B, C, D, E, K
ec nomenclature
pdb deposition date 2016-09-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00225 Kinesin Kinesin motor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.850.10 Alpha Beta 3-Layer(aba) Sandwich Kinesin Kinesin motor domain 5lt3A00
2UYMA 4A5YA 5GSZA 4PJMA 1T5CA 3NWNA 4E7ZA 4ZCAA 1D0ZA 2X51A 3H4SA 1GOJA 2X2RA 2OWMA 3GBJA 2Y65A 2PG2A 2GM1A 1D1BA 2X7EA 3K5EA 1D1CA 4AS7A 2NCDA 3KINA 5LT4A 2V26A 3K3BA 1F9VA 1VFVA 2WOGA 4A51A 2UYIA 2XT3A 3HQDA 4LNUK 1MMNA 4ZHIA 4PJLA 5LT2A 4E7SA 4UBFA 4PFOA 4PJNA 2FL2A 5HLEA 2GRYA 1MMAA 1F9WA 4DBRA 4A1ZA 3ZCWA 1N6MA 2KINA 2FL6A 1FMVA 1I5SA 3COBA 4AP0A 1G8XA 4BXNA 2Y5WA 4HNAK 4GKRA 3U06A 2ZFKA 3CJOA 1D1AA 4BN2A 3B6UA 4ETPA 1VFXA 1F9TA 4PFPA 1MNEA 5LT1A 1Q0BA 2ZFLA 2VASA 4B7BA 3T0QA 2ZFIA 4BBGA 3LREA 3KENA 1VOMA 3ZFDA 4ANJA 3PXNA 1CZ7A 1KK7A 2FMEA 1MMDA 1RY6A 1F9UA 1LKXA 1LVKA 2MYSA 2VB6A 2G1QA 1BR2A 2HEHA 1YRSA 1BR4A 2IEHA 3ZFCA 1I6IA 3DCBA 2XAEA 3L9HA 3BFNA 4A28A 1FMWA 4DBQA 2Q2ZA 1D0YA 4Y05A 3WPNA 1BG2A 1MKJA 4A50A 1V8JA 3DC4A 3KARA 2VVGA 3X2TA 1MMGA 4PK4A 2ZFMA 1II6A 1VFZA 1VFWA 2ZFJA 3WRDA 2FKYA 4FRZA 3B6VA 1X88A 3L1CA 4PJJA 5LT3A 4A14A 1D0XA 3CNZA 5LT0A 2X7DA 2X7CA 1BR1A 1SDMA 1V8KA 4H1GA 2Q2YA
chains in the Genus database with same CATH superfamily
2UYMA 4A5YA 5GSZA 4PJMA 1T5CA 3NWNA 4E7ZA 4ZCAA 1D0ZA 2X51A 3H4SA 1GOJA 2X2RA 2OWMA 3GBJA 2Y65A 4ETPB 2PG2A 2GM1A 1D1BA 2X7EA 3K5EA 1D1CA 4AS7A 2NCDA 3KINA 5LT4A 2V26A 3K3BA 1F9VA 1VFVA 2WOGA 4A51A 2UYIA 2XT3A 4GKPA 3HQDA 4LNUK 1MMNA 4ZHIA 4PJLA 5LT2A 4E7SA 4UBFA 4PFOA 4PJNA 2FL2A 5HLEA 2GRYA 1MMAA 1F9WA 4DBRA 4A1ZA 3ZCWA 1N6MA 2KINA 2FL6A 1FMVA 1I5SA 3COBA 4AP0A 1G8XA 4BXNA 2Y5WA 4HNAK 4GKRA 3U06A 2ZFKA 3CJOA 1D1AA 4BN2A 2O0AA 3B6UA 4ETPA 1VFXA 1F9TA 4PFPA 1MNEA 5LT1A 1Q0BA 2ZFLA 2VASA 4B7BA 3T0QA 2ZFIA 4BBGA 3LREA 3KENA 1VOMA 3ZFDA 4ANJA 3PXNA 1CZ7A 4GKQA 1KK7A 2FMEA 1MMDA 1RY6A 1F9UA 1LKXA 1LVKA 2MYSA 2VB6A 2G1QA 1BR2A 2HEHA 1YRSA 1BR4A 2IEHA 3ZFCA 1I6IA 3DCBA 2XAEA 3L9HA 3BFNA 4A28A 1FMWA 4DBQA 2Q2ZA 1D0YA 4Y05A 3WPNA 1BG2A 1MKJA 4A50A 1V8JA 3DC4A 3KARA 2VVGA 3X2TA 1MMGA 4PK4A 2ZFMA 1II6A 1VFZA 1VFWA 2ZFJA 3WRDA 2FKYA 4FRZA 3B6VA 1X88A 3L1CA 4PJJA 5LT3A 4A14A 1D0XA 3CNZA 5LT0A 2X7DA 2X7CA 1BR1A 1SDMA 1V8KA 4H1GA 2Q2YA
chains in the Genus database with same CATH topology
2UYMA 4A5YA 5GSZA 4PJMA 1T5CA 3NWNA 4E7ZA 4ZCAA 1D0ZA 2X51A 3H4SA 1GOJA 2X2RA 2OWMA 3GBJA 2Y65A 2PG2A 2GM1A 1D1BA 2X7EA 3K5EA 1D1CA 4AS7A 2NCDA 3KINA 5LT4A 2V26A 3K3BA 1F9VA 1VFVA 2WOGA 4A51A 2UYIA 2XT3A 3HQDA 4LNUK 1MMNA 4ZHIA 4PJLA 5LT2A 4E7SA 4UBFA 4PFOA 4PJNA 2FL2A 5HLEA 2GRYA 1MMAA 1F9WA 4DBRA 4A1ZA 3ZCWA 1N6MA 2KINA 2FL6A 1FMVA 1I5SA 3COBA 4AP0A 1G8XA 4BXNA 2Y5WA 4HNAK 4GKRA 3U06A 2ZFKA 3CJOA 1D1AA 4BN2A 3B6UA 4ETPA 1VFXA 1F9TA 4PFPA 1MNEA 5LT1A 1Q0BA 2ZFLA 2VASA 4B7BA 3T0QA 2ZFIA 4BBGA 3LREA 3KENA 1VOMA 3ZFDA 4ANJA 3PXNA 1CZ7A 1KK7A 2FMEA 1MMDA 1RY6A 1F9UA 1LKXA 1LVKA 2MYSA 2VB6A 2G1QA 1BR2A 2HEHA 1YRSA 1BR4A 2IEHA 3ZFCA 1I6IA 3DCBA 2XAEA 3L9HA 3BFNA 4A28A 1FMWA 4DBQA 2Q2ZA 1D0YA 4Y05A 3WPNA 1BG2A 1MKJA 4A50A 1V8JA 3DC4A 3KARA 2VVGA 3X2TA 1MMGA 4PK4A 2ZFMA 1II6A 1VFZA 1VFWA 2ZFJA 3WRDA 2FKYA 4FRZA 3B6VA 1X88A 3L1CA 4PJJA 5LT3A 4A14A 1D0XA 3CNZA 5LT0A 2X7DA 2X7CA 1BR1A 1SDMA 1V8KA 4H1GA 2Q2YA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2UYM A;  4A5Y A;  5GSZ A;  4PJM A;  1T5C A;  3NWN A;  4E7Z A;  4ZCA A;  1D0Z A;  2X51 A;  3H4S A;  1GOJ A;  2X2R A;  2OWM A;  3GBJ A;  2Y65 A;  2PG2 A;  2GM1 A;  1D1B A;  2X7E A;  3K5E A;  1D1C A;  4AS7 A;  2NCD A;  3KIN A;  5LT4 A;  2V26 A;  3K3B A;  1F9V A;  1VFV A;  2WOG A;  4A51 A;  2UYI A;  2XT3 A;  3HQD A;  4LNU K;  1MMN A;  4ZHI A;  4PJL A;  5LT2 A;  4E7S A;  4UBF A;  4PFO A;  4PJN A;  2FL2 A;  5HLE A;  2GRY A;  1MMA A;  1F9W A;  4DBR A;  4A1Z A;  3ZCW A;  1N6M A;  2KIN A;  2FL6 A;  1FMV A;  1I5S A;  3COB A;  4AP0 A;  1G8X A;  4BXN A;  2Y5W A;  4HNA K;  4GKR A;  3U06 A;  2ZFK A;  3CJO A;  1D1A A;  4BN2 A;  3B6U A;  4ETP A;  1VFX A;  1F9T A;  4PFP A;  1MNE A;  5LT1 A;  1Q0B A;  2ZFL A;  2VAS A;  4B7B A;  3T0Q A;  2ZFI A;  4BBG A;  3LRE A;  3KEN A;  1VOM A;  3ZFD A;  4ANJ A;  3PXN A;  1CZ7 A;  1KK7 A;  2FME A;  1MMD A;  1RY6 A;  1F9U A;  1LKX A;  1LVK A;  2MYS A;  2VB6 A;  2G1Q A;  1BR2 A;  2HEH A;  1YRS A;  1BR4 A;  2IEH A;  3ZFC A;  1I6I A;  3DCB A;  2XAE A;  3L9H A;  3BFN A;  4A28 A;  1FMW A;  4DBQ A;  2Q2Z A;  1D0Y A;  4Y05 A;  3WPN A;  1BG2 A;  1MKJ A;  4A50 A;  1V8J A;  3DC4 A;  3KAR A;  2VVG A;  3X2T A;  1MMG A;  4PK4 A;  2ZFM A;  1II6 A;  1VFZ A;  1VFW A;  2ZFJ A;  3WRD A;  2FKY A;  4FRZ A;  3B6V A;  1X88 A;  3L1C A;  4PJJ A;  5LT3 A;  4A14 A;  1D0X A;  3CNZ A;  5LT0 A;  2X7D A;  2X7C A;  1BR1 A;  1SDM A;  1V8K A;  4H1G A;  2Q2Y A; 
#chains in the Genus database with same CATH topology
 2UYM A;  4A5Y A;  5GSZ A;  4PJM A;  1T5C A;  3NWN A;  4E7Z A;  4ZCA A;  1D0Z A;  2X51 A;  3H4S A;  1GOJ A;  2X2R A;  2OWM A;  3GBJ A;  2Y65 A;  4ETP B;  2PG2 A;  2GM1 A;  1D1B A;  2X7E A;  3K5E A;  1D1C A;  4AS7 A;  2NCD A;  3KIN A;  5LT4 A;  2V26 A;  3K3B A;  1F9V A;  1VFV A;  2WOG A;  4A51 A;  2UYI A;  2XT3 A;  4GKP A;  3HQD A;  4LNU K;  1MMN A;  4ZHI A;  4PJL A;  5LT2 A;  4E7S A;  4UBF A;  4PFO A;  4PJN A;  2FL2 A;  5HLE A;  2GRY A;  1MMA A;  1F9W A;  4DBR A;  4A1Z A;  3ZCW A;  1N6M A;  2KIN A;  2FL6 A;  1FMV A;  1I5S A;  3COB A;  4AP0 A;  1G8X A;  4BXN A;  2Y5W A;  4HNA K;  4GKR A;  3U06 A;  2ZFK A;  3CJO A;  1D1A A;  4BN2 A;  2O0A A;  3B6U A;  4ETP A;  1VFX A;  1F9T A;  4PFP A;  1MNE A;  5LT1 A;  1Q0B A;  2ZFL A;  2VAS A;  4B7B A;  3T0Q A;  2ZFI A;  4BBG A;  3LRE A;  3KEN A;  1VOM A;  3ZFD A;  4ANJ A;  3PXN A;  1CZ7 A;  4GKQ A;  1KK7 A;  2FME A;  1MMD A;  1RY6 A;  1F9U A;  1LKX A;  1LVK A;  2MYS A;  2VB6 A;  2G1Q A;  1BR2 A;  2HEH A;  1YRS A;  1BR4 A;  2IEH A;  3ZFC A;  1I6I A;  3DCB A;  2XAE A;  3L9H A;  3BFN A;  4A28 A;  1FMW A;  4DBQ A;  2Q2Z A;  1D0Y A;  4Y05 A;  3WPN A;  1BG2 A;  1MKJ A;  4A50 A;  1V8J A;  3DC4 A;  3KAR A;  2VVG A;  3X2T A;  1MMG A;  4PK4 A;  2ZFM A;  1II6 A;  1VFZ A;  1VFW A;  2ZFJ A;  3WRD A;  2FKY A;  4FRZ A;  3B6V A;  1X88 A;  3L1C A;  4PJJ A;  5LT3 A;  4A14 A;  1D0X A;  3CNZ A;  5LT0 A;  2X7D A;  2X7C A;  1BR1 A;  1SDM A;  1V8K A;  4H1G A;  2Q2Y A; 
#chains in the Genus database with same CATH homology
 2UYM A;  4A5Y A;  5GSZ A;  4PJM A;  1T5C A;  3NWN A;  4E7Z A;  4ZCA A;  1D0Z A;  2X51 A;  3H4S A;  1GOJ A;  2X2R A;  2OWM A;  3GBJ A;  2Y65 A;  2PG2 A;  2GM1 A;  1D1B A;  2X7E A;  3K5E A;  1D1C A;  4AS7 A;  2NCD A;  3KIN A;  5LT4 A;  2V26 A;  3K3B A;  1F9V A;  1VFV A;  2WOG A;  4A51 A;  2UYI A;  2XT3 A;  3HQD A;  4LNU K;  1MMN A;  4ZHI A;  4PJL A;  5LT2 A;  4E7S A;  4UBF A;  4PFO A;  4PJN A;  2FL2 A;  5HLE A;  2GRY A;  1MMA A;  1F9W A;  4DBR A;  4A1Z A;  3ZCW A;  1N6M A;  2KIN A;  2FL6 A;  1FMV A;  1I5S A;  3COB A;  4AP0 A;  1G8X A;  4BXN A;  2Y5W A;  4HNA K;  4GKR A;  3U06 A;  2ZFK A;  3CJO A;  1D1A A;  4BN2 A;  3B6U A;  4ETP A;  1VFX A;  1F9T A;  4PFP A;  1MNE A;  5LT1 A;  1Q0B A;  2ZFL A;  2VAS A;  4B7B A;  3T0Q A;  2ZFI A;  4BBG A;  3LRE A;  3KEN A;  1VOM A;  3ZFD A;  4ANJ A;  3PXN A;  1CZ7 A;  1KK7 A;  2FME A;  1MMD A;  1RY6 A;  1F9U A;  1LKX A;  1LVK A;  2MYS A;  2VB6 A;  2G1Q A;  1BR2 A;  2HEH A;  1YRS A;  1BR4 A;  2IEH A;  3ZFC A;  1I6I A;  3DCB A;  2XAE A;  3L9H A;  3BFN A;  4A28 A;  1FMW A;  4DBQ A;  2Q2Z A;  1D0Y A;  4Y05 A;  3WPN A;  1BG2 A;  1MKJ A;  4A50 A;  1V8J A;  3DC4 A;  3KAR A;  2VVG A;  3X2T A;  1MMG A;  4PK4 A;  2ZFM A;  1II6 A;  1VFZ A;  1VFW A;  2ZFJ A;  3WRD A;  2FKY A;  4FRZ A;  3B6V A;  1X88 A;  3L1C A;  4PJJ A;  5LT3 A;  4A14 A;  1D0X A;  3CNZ A;  5LT0 A;  2X7D A;  2X7C A;  1BR1 A;  1SDM A;  1V8K A;  4H1G A;  2Q2Y A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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