4ETPA

C-terminal motor and motor homology domain of kar3vik1 fused to a synthetic heterodimeric coiled coil
Total Genus 130
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
130
sequence length
393
structure length
379
Chain Sequence
IAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANRTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNST
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Kar3Vik1, a member of the kinesin-14 superfamily, shows a novel kinesin microtubule binding pattern.
pubmed doi rcsb
molecule tags Motor protein
source organism Saccharomyces cerevisiae
molecule keywords Kinesin-like protein KAR3
total genus 130
structure length 379
sequence length 393
ec nomenclature
pdb deposition date 2012-04-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00225 Kinesin Kinesin motor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.850.10 Alpha Beta 3-Layer(aba) Sandwich Kinesin Kinesin motor domain 4etpA00
1F9TA 1VOMA 2PG2A 4PFPA 1BR1A 2Q2ZA 1D1AA 1MKJA 3NWNA 4LNUK 4PFOA 5LT0A 4BXNA 2NCDA 2Q2YA 4ANJA 1X88A 1VFWA 1D0YA 3BFNA 2IEHA 2KINA 2ZFLA 3CJOA 2X7DA 4DBRA 1II6A 3KENA 3L9HA 2WOGA 2X7EA 4E7ZA 3WRDA 1BR2A 3L1CA 3ZFDA 3K5EA 1D0ZA 2GRYA 2VB6A 3T0QA 2G1QA 2UYMA 2Y5WA 4A5YA 2Y65A 4PJMA 4AP0A 2VASA 1VFXA 1F9VA 1Q0BA 4FRZA 1SDMA 5LT1A 4BN2A 1MMDA 3B6UA 1D1CA 1F9UA 3KARA 2ZFKA 2V26A 2MYSA 2XT3A 1F9WA 4ZCAA 3COBA 2X7CA 1FMVA 1MNEA 4ZHIA 3H4SA 2VVGA 1V8JA 1D0XA 1FMWA 5GSZA 1BR4A 2XAEA 5HLEA 3ZCWA 4PJLA 3PXNA 5LT2A 4ETPA 1VFZA 3B6VA 1D1BA 4A14A 4PK4A 4BBGA 3HQDA 1RY6A 1CZ7A 4A1ZA 4DBQA 1BG2A 5LT3A 1MMNA 4H1GA 4Y05A 1T5CA 3X2TA 1YRSA 1LKXA 3KINA 3WPNA 1GOJA 4A51A 4PJNA 3ZFCA 1VFVA 4AS7A 4B7BA 2X2RA 1LVKA 2FL6A 4GKRA 2ZFIA 1N6MA 1V8KA 2FMEA 5LT4A 1G8XA 2UYIA 2HEHA 3DCBA 3LREA 4A50A 3CNZA 4PJJA 1KK7A 3U06A 2FL2A 3K3BA 4HNAK 2X51A 3DC4A 1MMGA 3GBJA 4UBFA 2FKYA 4E7SA 2OWMA 1MMAA 1I5SA 2ZFJA 1I6IA 4A28A 2GM1A 2ZFMA
chains in the Genus database with same CATH superfamily
1F9TA 1VOMA 2PG2A 4PFPA 1BR1A 2Q2ZA 1D1AA 1MKJA 3NWNA 4LNUK 4PFOA 5LT0A 4BXNA 2NCDA 2Q2YA 4GKQA 4ANJA 1X88A 1VFWA 1D0YA 3BFNA 2IEHA 2KINA 2ZFLA 3CJOA 2X7DA 4DBRA 1II6A 3KENA 3L9HA 2WOGA 2X7EA 4E7ZA 3WRDA 1BR2A 3L1CA 3ZFDA 3K5EA 1D0ZA 2GRYA 2VB6A 3T0QA 2G1QA 2UYMA 2Y5WA 4A5YA 2Y65A 4PJMA 4AP0A 2VASA 1VFXA 1F9VA 1Q0BA 4FRZA 1SDMA 5LT1A 4BN2A 1MMDA 3B6UA 1D1CA 1F9UA 3KARA 2ZFKA 2V26A 2MYSA 2XT3A 1F9WA 4ZCAA 3COBA 2X7CA 1FMVA 1MNEA 4ZHIA 3H4SA 2VVGA 1V8JA 1D0XA 1FMWA 5GSZA 1BR4A 2XAEA 5HLEA 3ZCWA 4PJLA 3PXNA 5LT2A 4ETPA 1VFZA 3B6VA 1D1BA 4A14A 4PK4A 4BBGA 3HQDA 1RY6A 1CZ7A 4A1ZA 4DBQA 1BG2A 5LT3A 1MMNA 4H1GA 4Y05A 1T5CA 3X2TA 1YRSA 4GKPA 1LKXA 3KINA 3WPNA 1GOJA 4A51A 4PJNA 3ZFCA 1VFVA 4AS7A 4B7BA 2X2RA 1LVKA 2FL6A 4GKRA 2ZFIA 1N6MA 1V8KA 2FMEA 5LT4A 1G8XA 2UYIA 2HEHA 3DCBA 3LREA 4A50A 3CNZA 4PJJA 2O0AA 1KK7A 3U06A 2FL2A 3K3BA 4HNAK 2X51A 3DC4A 1MMGA 3GBJA 4UBFA 2FKYA 4E7SA 2OWMA 1MMAA 1I5SA 2ZFJA 1I6IA 4A28A 4ETPB 2GM1A 2ZFMA
chains in the Genus database with same CATH topology
1F9TA 1VOMA 2PG2A 4PFPA 1BR1A 2Q2ZA 1D1AA 1MKJA 3NWNA 4LNUK 4PFOA 5LT0A 4BXNA 2NCDA 2Q2YA 4ANJA 1X88A 1VFWA 1D0YA 3BFNA 2IEHA 2KINA 2ZFLA 3CJOA 2X7DA 4DBRA 1II6A 3KENA 3L9HA 2WOGA 2X7EA 4E7ZA 3WRDA 1BR2A 3L1CA 3ZFDA 3K5EA 1D0ZA 2GRYA 2VB6A 3T0QA 2G1QA 2UYMA 2Y5WA 4A5YA 2Y65A 4PJMA 4AP0A 2VASA 1VFXA 1F9VA 1Q0BA 4FRZA 1SDMA 5LT1A 4BN2A 1MMDA 3B6UA 1D1CA 1F9UA 3KARA 2ZFKA 2V26A 2MYSA 2XT3A 1F9WA 4ZCAA 3COBA 2X7CA 1FMVA 1MNEA 4ZHIA 3H4SA 2VVGA 1V8JA 1D0XA 1FMWA 5GSZA 1BR4A 2XAEA 5HLEA 3ZCWA 4PJLA 3PXNA 5LT2A 4ETPA 1VFZA 3B6VA 1D1BA 4A14A 4PK4A 4BBGA 3HQDA 1RY6A 1CZ7A 4A1ZA 4DBQA 1BG2A 5LT3A 1MMNA 4H1GA 4Y05A 1T5CA 3X2TA 1YRSA 1LKXA 3KINA 3WPNA 1GOJA 4A51A 4PJNA 3ZFCA 1VFVA 4AS7A 4B7BA 2X2RA 1LVKA 2FL6A 4GKRA 2ZFIA 1N6MA 1V8KA 2FMEA 5LT4A 1G8XA 2UYIA 2HEHA 3DCBA 3LREA 4A50A 3CNZA 4PJJA 1KK7A 3U06A 2FL2A 3K3BA 4HNAK 2X51A 3DC4A 1MMGA 3GBJA 4UBFA 2FKYA 4E7SA 2OWMA 1MMAA 1I5SA 2ZFJA 1I6IA 4A28A 2GM1A 2ZFMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1F9T A;  1VOM A;  2PG2 A;  4PFP A;  1BR1 A;  2Q2Z A;  1D1A A;  1MKJ A;  3NWN A;  4LNU K;  4PFO A;  5LT0 A;  4BXN A;  2NCD A;  2Q2Y A;  4ANJ A;  1X88 A;  1VFW A;  1D0Y A;  3BFN A;  2IEH A;  2KIN A;  2ZFL A;  3CJO A;  2X7D A;  4DBR A;  1II6 A;  3KEN A;  3L9H A;  2WOG A;  2X7E A;  4E7Z A;  3WRD A;  1BR2 A;  3L1C A;  3ZFD A;  3K5E A;  1D0Z A;  2GRY A;  2VB6 A;  3T0Q A;  2G1Q A;  2UYM A;  2Y5W A;  4A5Y A;  2Y65 A;  4PJM A;  4AP0 A;  2VAS A;  1VFX A;  1F9V A;  1Q0B A;  4FRZ A;  1SDM A;  5LT1 A;  4BN2 A;  1MMD A;  3B6U A;  1D1C A;  1F9U A;  3KAR A;  2ZFK A;  2V26 A;  2MYS A;  2XT3 A;  1F9W A;  4ZCA A;  3COB A;  2X7C A;  1FMV A;  1MNE A;  4ZHI A;  3H4S A;  2VVG A;  1V8J A;  1D0X A;  1FMW A;  5GSZ A;  1BR4 A;  2XAE A;  5HLE A;  3ZCW A;  4PJL A;  3PXN A;  5LT2 A;  4ETP A;  1VFZ A;  3B6V A;  1D1B A;  4A14 A;  4PK4 A;  4BBG A;  3HQD A;  1RY6 A;  1CZ7 A;  4A1Z A;  4DBQ A;  1BG2 A;  5LT3 A;  1MMN A;  4H1G A;  4Y05 A;  1T5C A;  3X2T A;  1YRS A;  1LKX A;  3KIN A;  3WPN A;  1GOJ A;  4A51 A;  4PJN A;  3ZFC A;  1VFV A;  4AS7 A;  4B7B A;  2X2R A;  1LVK A;  2FL6 A;  4GKR A;  2ZFI A;  1N6M A;  1V8K A;  2FME A;  5LT4 A;  1G8X A;  2UYI A;  2HEH A;  3DCB A;  3LRE A;  4A50 A;  3CNZ A;  4PJJ A;  1KK7 A;  3U06 A;  2FL2 A;  3K3B A;  4HNA K;  2X51 A;  3DC4 A;  1MMG A;  3GBJ A;  4UBF A;  2FKY A;  4E7S A;  2OWM A;  1MMA A;  1I5S A;  2ZFJ A;  1I6I A;  4A28 A;  2GM1 A;  2ZFM A; 
#chains in the Genus database with same CATH topology
 1F9T A;  1VOM A;  2PG2 A;  4PFP A;  1BR1 A;  2Q2Z A;  1D1A A;  1MKJ A;  3NWN A;  4LNU K;  4PFO A;  5LT0 A;  4BXN A;  2NCD A;  2Q2Y A;  4GKQ A;  4ANJ A;  1X88 A;  1VFW A;  1D0Y A;  3BFN A;  2IEH A;  2KIN A;  2ZFL A;  3CJO A;  2X7D A;  4DBR A;  1II6 A;  3KEN A;  3L9H A;  2WOG A;  2X7E A;  4E7Z A;  3WRD A;  1BR2 A;  3L1C A;  3ZFD A;  3K5E A;  1D0Z A;  2GRY A;  2VB6 A;  3T0Q A;  2G1Q A;  2UYM A;  2Y5W A;  4A5Y A;  2Y65 A;  4PJM A;  4AP0 A;  2VAS A;  1VFX A;  1F9V A;  1Q0B A;  4FRZ A;  1SDM A;  5LT1 A;  4BN2 A;  1MMD A;  3B6U A;  1D1C A;  1F9U A;  3KAR A;  2ZFK A;  2V26 A;  2MYS A;  2XT3 A;  1F9W A;  4ZCA A;  3COB A;  2X7C A;  1FMV A;  1MNE A;  4ZHI A;  3H4S A;  2VVG A;  1V8J A;  1D0X A;  1FMW A;  5GSZ A;  1BR4 A;  2XAE A;  5HLE A;  3ZCW A;  4PJL A;  3PXN A;  5LT2 A;  4ETP A;  1VFZ A;  3B6V A;  1D1B A;  4A14 A;  4PK4 A;  4BBG A;  3HQD A;  1RY6 A;  1CZ7 A;  4A1Z A;  4DBQ A;  1BG2 A;  5LT3 A;  1MMN A;  4H1G A;  4Y05 A;  1T5C A;  3X2T A;  1YRS A;  4GKP A;  1LKX A;  3KIN A;  3WPN A;  1GOJ A;  4A51 A;  4PJN A;  3ZFC A;  1VFV A;  4AS7 A;  4B7B A;  2X2R A;  1LVK A;  2FL6 A;  4GKR A;  2ZFI A;  1N6M A;  1V8K A;  2FME A;  5LT4 A;  1G8X A;  2UYI A;  2HEH A;  3DCB A;  3LRE A;  4A50 A;  3CNZ A;  4PJJ A;  2O0A A;  1KK7 A;  3U06 A;  2FL2 A;  3K3B A;  4HNA K;  2X51 A;  3DC4 A;  1MMG A;  3GBJ A;  4UBF A;  2FKY A;  4E7S A;  2OWM A;  1MMA A;  1I5S A;  2ZFJ A;  1I6I A;  4A28 A;  4ETP B;  2GM1 A;  2ZFM A; 
#chains in the Genus database with same CATH homology
 1F9T A;  1VOM A;  2PG2 A;  4PFP A;  1BR1 A;  2Q2Z A;  1D1A A;  1MKJ A;  3NWN A;  4LNU K;  4PFO A;  5LT0 A;  4BXN A;  2NCD A;  2Q2Y A;  4ANJ A;  1X88 A;  1VFW A;  1D0Y A;  3BFN A;  2IEH A;  2KIN A;  2ZFL A;  3CJO A;  2X7D A;  4DBR A;  1II6 A;  3KEN A;  3L9H A;  2WOG A;  2X7E A;  4E7Z A;  3WRD A;  1BR2 A;  3L1C A;  3ZFD A;  3K5E A;  1D0Z A;  2GRY A;  2VB6 A;  3T0Q A;  2G1Q A;  2UYM A;  2Y5W A;  4A5Y A;  2Y65 A;  4PJM A;  4AP0 A;  2VAS A;  1VFX A;  1F9V A;  1Q0B A;  4FRZ A;  1SDM A;  5LT1 A;  4BN2 A;  1MMD A;  3B6U A;  1D1C A;  1F9U A;  3KAR A;  2ZFK A;  2V26 A;  2MYS A;  2XT3 A;  1F9W A;  4ZCA A;  3COB A;  2X7C A;  1FMV A;  1MNE A;  4ZHI A;  3H4S A;  2VVG A;  1V8J A;  1D0X A;  1FMW A;  5GSZ A;  1BR4 A;  2XAE A;  5HLE A;  3ZCW A;  4PJL A;  3PXN A;  5LT2 A;  4ETP A;  1VFZ A;  3B6V A;  1D1B A;  4A14 A;  4PK4 A;  4BBG A;  3HQD A;  1RY6 A;  1CZ7 A;  4A1Z A;  4DBQ A;  1BG2 A;  5LT3 A;  1MMN A;  4H1G A;  4Y05 A;  1T5C A;  3X2T A;  1YRS A;  1LKX A;  3KIN A;  3WPN A;  1GOJ A;  4A51 A;  4PJN A;  3ZFC A;  1VFV A;  4AS7 A;  4B7B A;  2X2R A;  1LVK A;  2FL6 A;  4GKR A;  2ZFI A;  1N6M A;  1V8K A;  2FME A;  5LT4 A;  1G8X A;  2UYI A;  2HEH A;  3DCB A;  3LRE A;  4A50 A;  3CNZ A;  4PJJ A;  1KK7 A;  3U06 A;  2FL2 A;  3K3B A;  4HNA K;  2X51 A;  3DC4 A;  1MMG A;  3GBJ A;  4UBF A;  2FKY A;  4E7S A;  2OWM A;  1MMA A;  1I5S A;  2ZFJ A;  1I6I A;  4A28 A;  2GM1 A;  2ZFM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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