1V8KA

The crystal structure of the minimal functional domain of the microtubule destabilizer kif2c complexed with mg-amppnp
Total Genus 108

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
108
sequence length
362
structure length
332
Chain Sequence
PNWEFARMIKEFRVTMECSPLTVTDPIEEHRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTNSSRSHACFQILLRTKGRLHGKFSLVDLAGNERMEGAEINKSLLALKECIRALGQFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELS
5010015020025030030025020015010050
020406080100Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV1 (61-64)S1 (73-79)TI2 (62-65)TI3 (63-66)TIV2 (66-69)TVIII1 (71-74)AH3 (135-141)S2 (95-99)S3 (102-110)AH4 (143-152)TIV3 (99-102)S10 (243-246)TI4 (111-114)TII2 (245-248)S12 (285-293)S4 (116-124)S5 (127-129)TVIII2 (125-128)TI5 (130-133)S6 (155-162)TII1 (163-166)TI7 (238-241)AH5 (168-173)AH7 (202-206)TI6 (225-228)TIV4 (174-181)AH6 (187-200)TIV5 (175-182)3H1 (183-185)S8 (222-225)S7 (210-219)S9 (231-237)TIV7 (226-229)TIV8 (228-231)S11 (251-252)S13 (298-306)TIV9 (294-297)TI1 (60-63)AH1 (44-58)AH2 (84-89)TIV6 (218-221)AH8 (256-269)AH9 (326-345)Updating...
connected with : NaN
molecule tags Structural protein
source organism Mus musculus
publication title A common mechanism for microtubule destabilizers-M type kinesins stabilize curling of the protofilament using the class-specific neck and loops.
pubmed doi rcsb
molecule keywords Kinesin-like protein KIF2C
total genus 108
structure length 332
sequence length 362
ec nomenclature
pdb deposition date 2004-01-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00225 Kinesin Kinesin motor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.850.10 Alpha Beta 3-Layer(aba) Sandwich Kinesin Kinesin motor domain 1v8kA00
2ZFKA 1VFWA 2X7DA 2X51A 3X2TA 2WOGA 4BBGA 1MMAA 3ZFDA 1VFVA 4LNUK 4PK4A 2VB6A 1FMWA 1V8KA 1VFXA 3B6VA 3ZFCA 1I5SA 2IEHA 5LT3A 1Q0BA 1RY6A 2X2RA 4PFOA 4A14A 2V26A 1V8JA 2FL2A 4PJMA 3CNZA 4DBRA 4ANJA 1BG2A 1D1BA 1D0YA 2HEHA 2KINA 4FRZA 4ZCAA 5HLEA 3KINA 2ZFMA 1F9VA 3PXNA 4A5YA 4A1ZA 4B7BA 4E7SA 5LT2A 4A50A 4PJLA 2MYSA 2UYIA 3GBJA 3U06A 1F9UA 1N6MA 2UYMA 2ZFJA 1BR1A 2X7CA 3WPNA 2Q2ZA 2XT3A 1F9TA 1F9WA 1G8XA 4Y05A 1LKXA 3NWNA 1MNEA 1BR2A 1LVKA 1YRSA 3K3BA 5LT4A 1MMNA 2XAEA 4PJNA 4UBFA 4AS7A 3CJOA 3COBA 3K5EA 4ZHIA 1X88A 1VFZA 1D0XA 3ZCWA 1BR4A 3BFNA 4BXNA 2FMEA 4A51A 4E7ZA 2VASA 2Y5WA 1SDMA 2ZFLA 1GOJA 2ZFIA 2G1QA 4A28A 2OWMA 3DC4A 3H4SA 1MMDA 2GRYA 3LREA 5LT0A 4H1GA 2Q2YA 3L1CA 1KK7A 3HQDA 1D1CA 3T0QA 1T5CA 2GM1A 3L9HA 1FMVA 4AP0A 4DBQA 2X7EA 3KENA 5LT1A 2FL6A 4PJJA 3WRDA 1MKJA 1I6IA 2VVGA 2FKYA 1CZ7A 4BN2A 1MMGA 2NCDA 4HNAK 2Y65A 3DCBA 1D0ZA 4PFPA 1D1AA 2PG2A 4GKRA 5GSZA 3KARA 3B6UA 1II6A 1VOMA 4ETPA
chains in the Genus database with same CATH superfamily
2ZFKA 1VFWA 2X7DA 2X51A 3X2TA 2WOGA 4BBGA 1MMAA 3ZFDA 1VFVA 4LNUK 4PK4A 2VB6A 1FMWA 1V8KA 1VFXA 3B6VA 3ZFCA 1I5SA 2IEHA 5LT3A 1Q0BA 1RY6A 2X2RA 4PFOA 4A14A 2V26A 1V8JA 2FL2A 4PJMA 3CNZA 4DBRA 4ANJA 1BG2A 1D1BA 1D0YA 2HEHA 2KINA 4FRZA 4ZCAA 5HLEA 3KINA 4GKPA 2ZFMA 1F9VA 3PXNA 4A5YA 4A1ZA 4B7BA 4E7SA 5LT2A 4A50A 4PJLA 2MYSA 2UYIA 3GBJA 3U06A 1F9UA 1N6MA 2UYMA 2ZFJA 1BR1A 2X7CA 3WPNA 2Q2ZA 2XT3A 1F9TA 1F9WA 1G8XA 4Y05A 1LKXA 3NWNA 1MNEA 1BR2A 1LVKA 1YRSA 3K3BA 5LT4A 1MMNA 2XAEA 4PJNA 4UBFA 4AS7A 3CJOA 3COBA 3K5EA 4ZHIA 2O0AA 1X88A 1VFZA 1D0XA 3ZCWA 1BR4A 3BFNA 4BXNA 2FMEA 4A51A 4E7ZA 2VASA 2Y5WA 1SDMA 2ZFLA 1GOJA 2ZFIA 2G1QA 4A28A 2OWMA 3DC4A 3H4SA 1MMDA 2GRYA 3LREA 5LT0A 4H1GA 2Q2YA 3L1CA 1KK7A 3HQDA 1D1CA 3T0QA 1T5CA 2GM1A 3L9HA 1FMVA 4AP0A 4DBQA 2X7EA 3KENA 5LT1A 2FL6A 4PJJA 3WRDA 1MKJA 1I6IA 2VVGA 2FKYA 1CZ7A 4BN2A 1MMGA 2NCDA 4HNAK 4ETPB 2Y65A 3DCBA 1D0ZA 4PFPA 1D1AA 2PG2A 4GKRA 5GSZA 4GKQA 3KARA 3B6UA 1II6A 1VOMA 4ETPA
chains in the Genus database with same CATH topology
2ZFKA 1VFWA 2X7DA 2X51A 3X2TA 2WOGA 4BBGA 1MMAA 3ZFDA 1VFVA 4LNUK 4PK4A 2VB6A 1FMWA 1V8KA 1VFXA 3B6VA 3ZFCA 1I5SA 2IEHA 5LT3A 1Q0BA 1RY6A 2X2RA 4PFOA 4A14A 2V26A 1V8JA 2FL2A 4PJMA 3CNZA 4DBRA 4ANJA 1BG2A 1D1BA 1D0YA 2HEHA 2KINA 4FRZA 4ZCAA 5HLEA 3KINA 2ZFMA 1F9VA 3PXNA 4A5YA 4A1ZA 4B7BA 4E7SA 5LT2A 4A50A 4PJLA 2MYSA 2UYIA 3GBJA 3U06A 1F9UA 1N6MA 2UYMA 2ZFJA 1BR1A 2X7CA 3WPNA 2Q2ZA 2XT3A 1F9TA 1F9WA 1G8XA 4Y05A 1LKXA 3NWNA 1MNEA 1BR2A 1LVKA 1YRSA 3K3BA 5LT4A 1MMNA 2XAEA 4PJNA 4UBFA 4AS7A 3CJOA 3COBA 3K5EA 4ZHIA 1X88A 1VFZA 1D0XA 3ZCWA 1BR4A 3BFNA 4BXNA 2FMEA 4A51A 4E7ZA 2VASA 2Y5WA 1SDMA 2ZFLA 1GOJA 2ZFIA 2G1QA 4A28A 2OWMA 3DC4A 3H4SA 1MMDA 2GRYA 3LREA 5LT0A 4H1GA 2Q2YA 3L1CA 1KK7A 3HQDA 1D1CA 3T0QA 1T5CA 2GM1A 3L9HA 1FMVA 4AP0A 4DBQA 2X7EA 3KENA 5LT1A 2FL6A 4PJJA 3WRDA 1MKJA 1I6IA 2VVGA 2FKYA 1CZ7A 4BN2A 1MMGA 2NCDA 4HNAK 2Y65A 3DCBA 1D0ZA 4PFPA 1D1AA 2PG2A 4GKRA 5GSZA 3KARA 3B6UA 1II6A 1VOMA 4ETPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ZFK A;  1VFW A;  2X7D A;  2X51 A;  3X2T A;  2WOG A;  4BBG A;  1MMA A;  3ZFD A;  1VFV A;  4LNU K;  4PK4 A;  2VB6 A;  1FMW A;  1V8K A;  1VFX A;  3B6V A;  3ZFC A;  1I5S A;  2IEH A;  5LT3 A;  1Q0B A;  1RY6 A;  2X2R A;  4PFO A;  4A14 A;  2V26 A;  1V8J A;  2FL2 A;  4PJM A;  3CNZ A;  4DBR A;  4ANJ A;  1BG2 A;  1D1B A;  1D0Y A;  2HEH A;  2KIN A;  4FRZ A;  4ZCA A;  5HLE A;  3KIN A;  2ZFM A;  1F9V A;  3PXN A;  4A5Y A;  4A1Z A;  4B7B A;  4E7S A;  5LT2 A;  4A50 A;  4PJL A;  2MYS A;  2UYI A;  3GBJ A;  3U06 A;  1F9U A;  1N6M A;  2UYM A;  2ZFJ A;  1BR1 A;  2X7C A;  3WPN A;  2Q2Z A;  2XT3 A;  1F9T A;  1F9W A;  1G8X A;  4Y05 A;  1LKX A;  3NWN A;  1MNE A;  1BR2 A;  1LVK A;  1YRS A;  3K3B A;  5LT4 A;  1MMN A;  2XAE A;  4PJN A;  4UBF A;  4AS7 A;  3CJO A;  3COB A;  3K5E A;  4ZHI A;  1X88 A;  1VFZ A;  1D0X A;  3ZCW A;  1BR4 A;  3BFN A;  4BXN A;  2FME A;  4A51 A;  4E7Z A;  2VAS A;  2Y5W A;  1SDM A;  2ZFL A;  1GOJ A;  2ZFI A;  2G1Q A;  4A28 A;  2OWM A;  3DC4 A;  3H4S A;  1MMD A;  2GRY A;  3LRE A;  5LT0 A;  4H1G A;  2Q2Y A;  3L1C A;  1KK7 A;  3HQD A;  1D1C A;  3T0Q A;  1T5C A;  2GM1 A;  3L9H A;  1FMV A;  4AP0 A;  4DBQ A;  2X7E A;  3KEN A;  5LT1 A;  2FL6 A;  4PJJ A;  3WRD A;  1MKJ A;  1I6I A;  2VVG A;  2FKY A;  1CZ7 A;  4BN2 A;  1MMG A;  2NCD A;  4HNA K;  2Y65 A;  3DCB A;  1D0Z A;  4PFP A;  1D1A A;  2PG2 A;  4GKR A;  5GSZ A;  3KAR A;  3B6U A;  1II6 A;  1VOM A;  4ETP A; 
#chains in the Genus database with same CATH topology
 2ZFK A;  1VFW A;  2X7D A;  2X51 A;  3X2T A;  2WOG A;  4BBG A;  1MMA A;  3ZFD A;  1VFV A;  4LNU K;  4PK4 A;  2VB6 A;  1FMW A;  1V8K A;  1VFX A;  3B6V A;  3ZFC A;  1I5S A;  2IEH A;  5LT3 A;  1Q0B A;  1RY6 A;  2X2R A;  4PFO A;  4A14 A;  2V26 A;  1V8J A;  2FL2 A;  4PJM A;  3CNZ A;  4DBR A;  4ANJ A;  1BG2 A;  1D1B A;  1D0Y A;  2HEH A;  2KIN A;  4FRZ A;  4ZCA A;  5HLE A;  3KIN A;  4GKP A;  2ZFM A;  1F9V A;  3PXN A;  4A5Y A;  4A1Z A;  4B7B A;  4E7S A;  5LT2 A;  4A50 A;  4PJL A;  2MYS A;  2UYI A;  3GBJ A;  3U06 A;  1F9U A;  1N6M A;  2UYM A;  2ZFJ A;  1BR1 A;  2X7C A;  3WPN A;  2Q2Z A;  2XT3 A;  1F9T A;  1F9W A;  1G8X A;  4Y05 A;  1LKX A;  3NWN A;  1MNE A;  1BR2 A;  1LVK A;  1YRS A;  3K3B A;  5LT4 A;  1MMN A;  2XAE A;  4PJN A;  4UBF A;  4AS7 A;  3CJO A;  3COB A;  3K5E A;  4ZHI A;  2O0A A;  1X88 A;  1VFZ A;  1D0X A;  3ZCW A;  1BR4 A;  3BFN A;  4BXN A;  2FME A;  4A51 A;  4E7Z A;  2VAS A;  2Y5W A;  1SDM A;  2ZFL A;  1GOJ A;  2ZFI A;  2G1Q A;  4A28 A;  2OWM A;  3DC4 A;  3H4S A;  1MMD A;  2GRY A;  3LRE A;  5LT0 A;  4H1G A;  2Q2Y A;  3L1C A;  1KK7 A;  3HQD A;  1D1C A;  3T0Q A;  1T5C A;  2GM1 A;  3L9H A;  1FMV A;  4AP0 A;  4DBQ A;  2X7E A;  3KEN A;  5LT1 A;  2FL6 A;  4PJJ A;  3WRD A;  1MKJ A;  1I6I A;  2VVG A;  2FKY A;  1CZ7 A;  4BN2 A;  1MMG A;  2NCD A;  4HNA K;  4ETP B;  2Y65 A;  3DCB A;  1D0Z A;  4PFP A;  1D1A A;  2PG2 A;  4GKR A;  5GSZ A;  4GKQ A;  3KAR A;  3B6U A;  1II6 A;  1VOM A;  4ETP A; 
#chains in the Genus database with same CATH homology
 2ZFK A;  1VFW A;  2X7D A;  2X51 A;  3X2T A;  2WOG A;  4BBG A;  1MMA A;  3ZFD A;  1VFV A;  4LNU K;  4PK4 A;  2VB6 A;  1FMW A;  1V8K A;  1VFX A;  3B6V A;  3ZFC A;  1I5S A;  2IEH A;  5LT3 A;  1Q0B A;  1RY6 A;  2X2R A;  4PFO A;  4A14 A;  2V26 A;  1V8J A;  2FL2 A;  4PJM A;  3CNZ A;  4DBR A;  4ANJ A;  1BG2 A;  1D1B A;  1D0Y A;  2HEH A;  2KIN A;  4FRZ A;  4ZCA A;  5HLE A;  3KIN A;  2ZFM A;  1F9V A;  3PXN A;  4A5Y A;  4A1Z A;  4B7B A;  4E7S A;  5LT2 A;  4A50 A;  4PJL A;  2MYS A;  2UYI A;  3GBJ A;  3U06 A;  1F9U A;  1N6M A;  2UYM A;  2ZFJ A;  1BR1 A;  2X7C A;  3WPN A;  2Q2Z A;  2XT3 A;  1F9T A;  1F9W A;  1G8X A;  4Y05 A;  1LKX A;  3NWN A;  1MNE A;  1BR2 A;  1LVK A;  1YRS A;  3K3B A;  5LT4 A;  1MMN A;  2XAE A;  4PJN A;  4UBF A;  4AS7 A;  3CJO A;  3COB A;  3K5E A;  4ZHI A;  1X88 A;  1VFZ A;  1D0X A;  3ZCW A;  1BR4 A;  3BFN A;  4BXN A;  2FME A;  4A51 A;  4E7Z A;  2VAS A;  2Y5W A;  1SDM A;  2ZFL A;  1GOJ A;  2ZFI A;  2G1Q A;  4A28 A;  2OWM A;  3DC4 A;  3H4S A;  1MMD A;  2GRY A;  3LRE A;  5LT0 A;  4H1G A;  2Q2Y A;  3L1C A;  1KK7 A;  3HQD A;  1D1C A;  3T0Q A;  1T5C A;  2GM1 A;  3L9H A;  1FMV A;  4AP0 A;  4DBQ A;  2X7E A;  3KEN A;  5LT1 A;  2FL6 A;  4PJJ A;  3WRD A;  1MKJ A;  1I6I A;  2VVG A;  2FKY A;  1CZ7 A;  4BN2 A;  1MMG A;  2NCD A;  4HNA K;  2Y65 A;  3DCB A;  1D0Z A;  4PFP A;  1D1A A;  2PG2 A;  4GKR A;  5GSZ A;  3KAR A;  3B6U A;  1II6 A;  1VOM A;  4ETP A; 
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similar chains in the Genus database (?% sequence similarity)
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