1VFV | Genus

Total Genus 102

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	102
sequence length	360
structure length	324
Chain Sequence	GASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVTSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLAGSEANINKSLTTLGKVISALAEMFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVNH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transport protein
source organism	Mus musculus
publication title	KIF1A Alternately Uses Two Loops to Bind Microtubules pubmed doi rcsb
molecule keywords	PROTEIN (Fusion protein consisting of Kinesin-like protein K
total genus	102
structure length	324
sequence length	360
ec nomenclature
pdb deposition date	2004-04-19

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00225	Kinesin	Kinesin motor domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.40.850.10	Alpha Beta	3-Layer(aba) Sandwich	Kinesin	Kinesin motor domain	1vfvA00

4E7SA 3WPNA 2KINA 4UBFA 1G8XA 3B6UA 3NWNA 2HEHA 3L9HA 1D0YA 4PFOA 3ZFDA 1I5SA 2GM1A 2X2RA 1V8JA 4A1ZA 2WOGA 1MMGA 2Y65A 1MKJA 2ZFMA 4H1GA 3GBJA 1GOJA 1BR2A 1F9WA 5LT0A 1BR4A 1CZ7A 4ETPA 2FMEA 4PJNA 3L1CA 2Q2YA 2X7CA 2FKYA 1N6MA 2FL6A 2X51A 3KARA 3H4SA 1KK7A 1BG2A 1F9UA 4ANJA 1YRSA 4A50A 2ZFKA 1D1CA 1RY6A 5LT4A 1D0XA 3KINA 1SDMA 4FRZA 1BR1A 3HQDA 1MMAA 5HLEA 3ZCWA 4A51A 1F9VA 4DBRA 4ZHIA 3KENA 2NCDA 2OWMA 1VFZA 4BN2A 2Q2ZA 1FMVA 4DBQA 4Y05A 4BXNA 2VB6A 3ZFCA 1VFVA 1D1BA 2V26A 2MYSA 3DC4A 3PXNA 4PJMA 5LT3A 1II6A 2X7DA 2G1QA 2XAEA 3K5EA 4HNAK 5LT2A 4E7ZA 4AP0A 4B7BA 2UYMA 3K3BA 4LNUK 2GRYA 2UYIA 4ZCAA 4A14A 2ZFJA 1D1AA 4PK4A 1X88A 3COBA 1FMWA 2IEHA 4PJJA 3X2TA 3U06A 1LKXA 1VFXA 4PFPA 1F9TA 1Q0BA 3LREA 2Y5WA 3DCBA 4A28A 4AS7A 2VVGA 3WRDA 1MNEA 4GKRA 4PJLA 3T0QA 1D0ZA 3BFNA 1I6IA 2PG2A 1MMDA 2ZFIA 3CJOA 1V8KA 1VFWA 2XT3A 5GSZA 1VOMA 1LVKA 2X7EA 5LT1A 4BBGA 1T5CA 4A5YA 2ZFLA 3B6VA 3CNZA 1MMNA 2VASA 2FL2A
chains in the Genus database with same CATH superfamily

4E7SA 3WPNA 4GKQA 2KINA 4GKPA 4UBFA 1G8XA 3B6UA 3NWNA 2HEHA 3L9HA 1D0YA 4PFOA 3ZFDA 1I5SA 2GM1A 2X2RA 1V8JA 4A1ZA 2WOGA 1MMGA 2Y65A 1MKJA 2ZFMA 4H1GA 3GBJA 1GOJA 1BR2A 1F9WA 5LT0A 1BR4A 1CZ7A 4ETPA 2FMEA 4PJNA 3L1CA 2Q2YA 2X7CA 2FKYA 1N6MA 2FL6A 2X51A 3KARA 3H4SA 1KK7A 1BG2A 1F9UA 4ANJA 1YRSA 4A50A 4ETPB 2ZFKA 1D1CA 1RY6A 5LT4A 1D0XA 3KINA 1SDMA 4FRZA 1BR1A 3HQDA 1MMAA 5HLEA 3ZCWA 4A51A 1F9VA 4DBRA 4ZHIA 3KENA 2NCDA 2OWMA 1VFZA 4BN2A 2Q2ZA 1FMVA 4DBQA 4Y05A 4BXNA 2VB6A 3ZFCA 1VFVA 1D1BA 2V26A 2MYSA 3DC4A 3PXNA 4PJMA 5LT3A 1II6A 2X7DA 2G1QA 2XAEA 3K5EA 4HNAK 5LT2A 4E7ZA 4AP0A 4B7BA 2UYMA 3K3BA 4LNUK 2GRYA 2UYIA 4ZCAA 4A14A 2ZFJA 1D1AA 4PK4A 1X88A 3COBA 1FMWA 2IEHA 4PJJA 3X2TA 3U06A 1LKXA 1VFXA 4PFPA 1F9TA 1Q0BA 3LREA 2Y5WA 3DCBA 4A28A 4AS7A 2VVGA 3WRDA 1MNEA 4GKRA 4PJLA 3T0QA 1D0ZA 3BFNA 1I6IA 2PG2A 1MMDA 2ZFIA 3CJOA 1V8KA 1VFWA 2XT3A 5GSZA 1VOMA 1LVKA 2X7EA 5LT1A 2O0AA 4BBGA 1T5CA 4A5YA 2ZFLA 3B6VA 3CNZA 1MMNA 2VASA 2FL2A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4E7S A;  3WPN A;  2KIN A;  4UBF A;  1G8X A;  3B6U A;  3NWN A;  2HEH A;  3L9H A;  1D0Y A;  4PFO A;  3ZFD A;  1I5S A;  2GM1 A;  2X2R A;  1V8J A;  4A1Z A;  2WOG A;  1MMG A;  2Y65 A;  1MKJ A;  2ZFM A;  4H1G A;  3GBJ A;  1GOJ A;  1BR2 A;  1F9W A;  5LT0 A;  1BR4 A;  1CZ7 A;  4ETP A;  2FME A;  4PJN A;  3L1C A;  2Q2Y A;  2X7C A;  2FKY A;  1N6M A;  2FL6 A;  2X51 A;  3KAR A;  3H4S A;  1KK7 A;  1BG2 A;  1F9U A;  4ANJ A;  1YRS A;  4A50 A;  2ZFK A;  1D1C A;  1RY6 A;  5LT4 A;  1D0X A;  3KIN A;  1SDM A;  4FRZ A;  1BR1 A;  3HQD A;  1MMA A;  5HLE A;  3ZCW A;  4A51 A;  1F9V A;  4DBR A;  4ZHI A;  3KEN A;  2NCD A;  2OWM A;  1VFZ A;  4BN2 A;  2Q2Z A;  1FMV A;  4DBQ A;  4Y05 A;  4BXN A;  2VB6 A;  3ZFC A;  1VFV A;  1D1B A;  2V26 A;  2MYS A;  3DC4 A;  3PXN A;  4PJM A;  5LT3 A;  1II6 A;  2X7D A;  2G1Q A;  2XAE A;  3K5E A;  4HNA K;  5LT2 A;  4E7Z A;  4AP0 A;  4B7B A;  2UYM A;  3K3B A;  4LNU K;  2GRY A;  2UYI A;  4ZCA A;  4A14 A;  2ZFJ A;  1D1A A;  4PK4 A;  1X88 A;  3COB A;  1FMW A;  2IEH A;  4PJJ A;  3X2T A;  3U06 A;  1LKX A;  1VFX A;  4PFP A;  1F9T A;  1Q0B A;  3LRE A;  2Y5W A;  3DCB A;  4A28 A;  4AS7 A;  2VVG A;  3WRD A;  1MNE A;  4GKR A;  4PJL A;  3T0Q A;  1D0Z A;  3BFN A;  1I6I A;  2PG2 A;  1MMD A;  2ZFI A;  3CJO A;  1V8K A;  1VFW A;  2XT3 A;  5GSZ A;  1VOM A;  1LVK A;  2X7E A;  5LT1 A;  4BBG A;  1T5C A;  4A5Y A;  2ZFL A;  3B6V A;  3CNZ A;  1MMN A;  2VAS A;  2FL2 A; 
#chains in the Genus database with same CATH topology
 4E7S A;  3WPN A;  4GKQ A;  2KIN A;  4GKP A;  4UBF A;  1G8X A;  3B6U A;  3NWN A;  2HEH A;  3L9H A;  1D0Y A;  4PFO A;  3ZFD A;  1I5S A;  2GM1 A;  2X2R A;  1V8J A;  4A1Z A;  2WOG A;  1MMG A;  2Y65 A;  1MKJ A;  2ZFM A;  4H1G A;  3GBJ A;  1GOJ A;  1BR2 A;  1F9W A;  5LT0 A;  1BR4 A;  1CZ7 A;  4ETP A;  2FME A;  4PJN A;  3L1C A;  2Q2Y A;  2X7C A;  2FKY A;  1N6M A;  2FL6 A;  2X51 A;  3KAR A;  3H4S A;  1KK7 A;  1BG2 A;  1F9U A;  4ANJ A;  1YRS A;  4A50 A;  4ETP B;  2ZFK A;  1D1C A;  1RY6 A;  5LT4 A;  1D0X A;  3KIN A;  1SDM A;  4FRZ A;  1BR1 A;  3HQD A;  1MMA A;  5HLE A;  3ZCW A;  4A51 A;  1F9V A;  4DBR A;  4ZHI A;  3KEN A;  2NCD A;  2OWM A;  1VFZ A;  4BN2 A;  2Q2Z A;  1FMV A;  4DBQ A;  4Y05 A;  4BXN A;  2VB6 A;  3ZFC A;  1VFV A;  1D1B A;  2V26 A;  2MYS A;  3DC4 A;  3PXN A;  4PJM A;  5LT3 A;  1II6 A;  2X7D A;  2G1Q A;  2XAE A;  3K5E A;  4HNA K;  5LT2 A;  4E7Z A;  4AP0 A;  4B7B A;  2UYM A;  3K3B A;  4LNU K;  2GRY A;  2UYI A;  4ZCA A;  4A14 A;  2ZFJ A;  1D1A A;  4PK4 A;  1X88 A;  3COB A;  1FMW A;  2IEH A;  4PJJ A;  3X2T A;  3U06 A;  1LKX A;  1VFX A;  4PFP A;  1F9T A;  1Q0B A;  3LRE A;  2Y5W A;  3DCB A;  4A28 A;  4AS7 A;  2VVG A;  3WRD A;  1MNE A;  4GKR A;  4PJL A;  3T0Q A;  1D0Z A;  3BFN A;  1I6I A;  2PG2 A;  1MMD A;  2ZFI A;  3CJO A;  1V8K A;  1VFW A;  2XT3 A;  5GSZ A;  1VOM A;  1LVK A;  2X7E A;  5LT1 A;  2O0A A;  4BBG A;  1T5C A;  4A5Y A;  2ZFL A;  3B6V A;  3CNZ A;  1MMN A;  2VAS A;  2FL2 A; 
#chains in the Genus database with same CATH homology
 4E7S A;  3WPN A;  2KIN A;  4UBF A;  1G8X A;  3B6U A;  3NWN A;  2HEH A;  3L9H A;  1D0Y A;  4PFO A;  3ZFD A;  1I5S A;  2GM1 A;  2X2R A;  1V8J A;  4A1Z A;  2WOG A;  1MMG A;  2Y65 A;  1MKJ A;  2ZFM A;  4H1G A;  3GBJ A;  1GOJ A;  1BR2 A;  1F9W A;  5LT0 A;  1BR4 A;  1CZ7 A;  4ETP A;  2FME A;  4PJN A;  3L1C A;  2Q2Y A;  2X7C A;  2FKY A;  1N6M A;  2FL6 A;  2X51 A;  3KAR A;  3H4S A;  1KK7 A;  1BG2 A;  1F9U A;  4ANJ A;  1YRS A;  4A50 A;  2ZFK A;  1D1C A;  1RY6 A;  5LT4 A;  1D0X A;  3KIN A;  1SDM A;  4FRZ A;  1BR1 A;  3HQD A;  1MMA A;  5HLE A;  3ZCW A;  4A51 A;  1F9V A;  4DBR A;  4ZHI A;  3KEN A;  2NCD A;  2OWM A;  1VFZ A;  4BN2 A;  2Q2Z A;  1FMV A;  4DBQ A;  4Y05 A;  4BXN A;  2VB6 A;  3ZFC A;  1VFV A;  1D1B A;  2V26 A;  2MYS A;  3DC4 A;  3PXN A;  4PJM A;  5LT3 A;  1II6 A;  2X7D A;  2G1Q A;  2XAE A;  3K5E A;  4HNA K;  5LT2 A;  4E7Z A;  4AP0 A;  4B7B A;  2UYM A;  3K3B A;  4LNU K;  2GRY A;  2UYI A;  4ZCA A;  4A14 A;  2ZFJ A;  1D1A A;  4PK4 A;  1X88 A;  3COB A;  1FMW A;  2IEH A;  4PJJ A;  3X2T A;  3U06 A;  1LKX A;  1VFX A;  4PFP A;  1F9T A;  1Q0B A;  3LRE A;  2Y5W A;  3DCB A;  4A28 A;  4AS7 A;  2VVG A;  3WRD A;  1MNE A;  4GKR A;  4PJL A;  3T0Q A;  1D0Z A;  3BFN A;  1I6I A;  2PG2 A;  1MMD A;  2ZFI A;  3CJO A;  1V8K A;  1VFW A;  2XT3 A;  5GSZ A;  1VOM A;  1LVK A;  2X7E A;  5LT1 A;  4BBG A;  1T5C A;  4A5Y A;  2ZFL A;  3B6V A;  3CNZ A;  1MMN A;  2VAS A;  2FL2 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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1VFVA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations