2NCDA

Ncd (non-claret disjunctional) dimer from d. melanogaster
Total Genus 120
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
120
sequence length
368
structure length
358
Chain Sequence
LRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSESPNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Direction determination in the minus-end-directed kinesin motor ncd.
pubmed doi rcsb
molecule tags Contractile protein
source organism Drosophila melanogaster
molecule keywords PROTEIN (Kinesin motor NCD)
total genus 120
structure length 358
sequence length 368
ec nomenclature
pdb deposition date 1999-06-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00225 Kinesin Kinesin motor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.850.10 Alpha Beta 3-Layer(aba) Sandwich Kinesin Kinesin motor domain 2ncdA00
3ZFDA 2UYMA 4AS7A 4ZHIA 4A5YA 4E7SA 2X7CA 3HQDA 1CZ7A 2ZFKA 1MMGA 1V8KA 1I5SA 4PJNA 3KENA 1GOJA 2Q2ZA 2VASA 3LREA 3L1CA 1F9UA 3H4SA 2Y65A 2G1QA 2ZFIA 1D0ZA 1BR2A 4FRZA 2ZFMA 2PG2A 4H1GA 2V26A 1T5CA 4ETPA 1VOMA 4GKRA 2FMEA 4PJJA 4DBQA 1LKXA 1D1BA 1II6A 4A28A 4Y05A 2ZFJA 1BR4A 1G8XA 2GRYA 2UYIA 3BFNA 4BN2A 2MYSA 2FKYA 2IEHA 1F9WA 4HNAK 2X7EA 4DBRA 2FL6A 4PJMA 4AP0A 2NCDA 4ANJA 3K3BA 1VFVA 4PFOA 5LT3A 3KINA 1LVKA 3DCBA 3B6UA 4LNUK 1YRSA 4E7ZA 1MMDA 1MMNA 3NWNA 3T0QA 3B6VA 1BG2A 1BR1A 2VVGA 5LT1A 1VFXA 5HLEA 2KINA 2Q2YA 3CJOA 5LT4A 1X88A 3WRDA 3K5EA 4B7BA 1F9TA 3PXNA 4PJLA 1VFWA 2X7DA 1SDMA 2ZFLA 3ZFCA 4PFPA 2VB6A 3X2TA 1FMWA 2OWMA 4ZCAA 4A50A 2Y5WA 1I6IA 4UBFA 2WOGA 1MMAA 2HEHA 1D0XA 1Q0BA 1RY6A 2XT3A 2X2RA 5LT2A 1FMVA 1D0YA 3KARA 3U06A 1MNEA 1D1CA 3ZCWA 3DC4A 3L9HA 2XAEA 4A51A 4BBGA 1N6MA 3GBJA 1VFZA 5GSZA 4BXNA 5LT0A 1F9VA 1D1AA 1MKJA 2GM1A 1V8JA 4PK4A 4A1ZA 3COBA 2X51A 2FL2A 4A14A 3CNZA 3WPNA 1KK7A
chains in the Genus database with same CATH superfamily
3ZFDA 2UYMA 4AS7A 4ZHIA 4A5YA 4E7SA 2X7CA 3HQDA 1CZ7A 2ZFKA 1MMGA 1V8KA 1I5SA 4PJNA 3KENA 1GOJA 2Q2ZA 2VASA 3LREA 3L1CA 1F9UA 3H4SA 2Y65A 2G1QA 2ZFIA 1D0ZA 1BR2A 4FRZA 2ZFMA 2PG2A 4H1GA 2V26A 1T5CA 4ETPB 4ETPA 1VOMA 4GKRA 2FMEA 4PJJA 4DBQA 1LKXA 1D1BA 1II6A 4A28A 4GKPA 4Y05A 2ZFJA 1BR4A 1G8XA 2GRYA 2UYIA 3BFNA 2O0AA 4BN2A 2MYSA 2FKYA 2IEHA 1F9WA 4HNAK 2X7EA 4DBRA 2FL6A 4PJMA 4AP0A 2NCDA 4ANJA 3K3BA 1VFVA 4PFOA 5LT3A 3KINA 1LVKA 3DCBA 3B6UA 4LNUK 1YRSA 4E7ZA 1MMDA 1MMNA 3NWNA 3T0QA 3B6VA 1BG2A 1BR1A 4GKQA 2VVGA 5LT1A 1VFXA 5HLEA 2KINA 2Q2YA 3CJOA 5LT4A 1X88A 3WRDA 3K5EA 4B7BA 1F9TA 3PXNA 4PJLA 1VFWA 2X7DA 1SDMA 2ZFLA 3ZFCA 4PFPA 2VB6A 3X2TA 1FMWA 2OWMA 4ZCAA 4A50A 2Y5WA 1I6IA 4UBFA 2WOGA 1MMAA 2HEHA 1D0XA 1Q0BA 1RY6A 2XT3A 2X2RA 5LT2A 1FMVA 1D0YA 3KARA 3U06A 1MNEA 1D1CA 3ZCWA 3DC4A 3L9HA 2XAEA 4A51A 4BBGA 1N6MA 3GBJA 1VFZA 5GSZA 4BXNA 5LT0A 1F9VA 1D1AA 1MKJA 2GM1A 1V8JA 4PK4A 4A1ZA 3COBA 2X51A 2FL2A 4A14A 3CNZA 3WPNA 1KK7A
chains in the Genus database with same CATH topology
3ZFDA 2UYMA 4AS7A 4ZHIA 4A5YA 4E7SA 2X7CA 3HQDA 1CZ7A 2ZFKA 1MMGA 1V8KA 1I5SA 4PJNA 3KENA 1GOJA 2Q2ZA 2VASA 3LREA 3L1CA 1F9UA 3H4SA 2Y65A 2G1QA 2ZFIA 1D0ZA 1BR2A 4FRZA 2ZFMA 2PG2A 4H1GA 2V26A 1T5CA 4ETPA 1VOMA 4GKRA 2FMEA 4PJJA 4DBQA 1LKXA 1D1BA 1II6A 4A28A 4Y05A 2ZFJA 1BR4A 1G8XA 2GRYA 2UYIA 3BFNA 4BN2A 2MYSA 2FKYA 2IEHA 1F9WA 4HNAK 2X7EA 4DBRA 2FL6A 4PJMA 4AP0A 2NCDA 4ANJA 3K3BA 1VFVA 4PFOA 5LT3A 3KINA 1LVKA 3DCBA 3B6UA 4LNUK 1YRSA 4E7ZA 1MMDA 1MMNA 3NWNA 3T0QA 3B6VA 1BG2A 1BR1A 2VVGA 5LT1A 1VFXA 5HLEA 2KINA 2Q2YA 3CJOA 5LT4A 1X88A 3WRDA 3K5EA 4B7BA 1F9TA 3PXNA 4PJLA 1VFWA 2X7DA 1SDMA 2ZFLA 3ZFCA 4PFPA 2VB6A 3X2TA 1FMWA 2OWMA 4ZCAA 4A50A 2Y5WA 1I6IA 4UBFA 2WOGA 1MMAA 2HEHA 1D0XA 1Q0BA 1RY6A 2XT3A 2X2RA 5LT2A 1FMVA 1D0YA 3KARA 3U06A 1MNEA 1D1CA 3ZCWA 3DC4A 3L9HA 2XAEA 4A51A 4BBGA 1N6MA 3GBJA 1VFZA 5GSZA 4BXNA 5LT0A 1F9VA 1D1AA 1MKJA 2GM1A 1V8JA 4PK4A 4A1ZA 3COBA 2X51A 2FL2A 4A14A 3CNZA 3WPNA 1KK7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ZFD A;  2UYM A;  4AS7 A;  4ZHI A;  4A5Y A;  4E7S A;  2X7C A;  3HQD A;  1CZ7 A;  2ZFK A;  1MMG A;  1V8K A;  1I5S A;  4PJN A;  3KEN A;  1GOJ A;  2Q2Z A;  2VAS A;  3LRE A;  3L1C A;  1F9U A;  3H4S A;  2Y65 A;  2G1Q A;  2ZFI A;  1D0Z A;  1BR2 A;  4FRZ A;  2ZFM A;  2PG2 A;  4H1G A;  2V26 A;  1T5C A;  4ETP A;  1VOM A;  4GKR A;  2FME A;  4PJJ A;  4DBQ A;  1LKX A;  1D1B A;  1II6 A;  4A28 A;  4Y05 A;  2ZFJ A;  1BR4 A;  1G8X A;  2GRY A;  2UYI A;  3BFN A;  4BN2 A;  2MYS A;  2FKY A;  2IEH A;  1F9W A;  4HNA K;  2X7E A;  4DBR A;  2FL6 A;  4PJM A;  4AP0 A;  2NCD A;  4ANJ A;  3K3B A;  1VFV A;  4PFO A;  5LT3 A;  3KIN A;  1LVK A;  3DCB A;  3B6U A;  4LNU K;  1YRS A;  4E7Z A;  1MMD A;  1MMN A;  3NWN A;  3T0Q A;  3B6V A;  1BG2 A;  1BR1 A;  2VVG A;  5LT1 A;  1VFX A;  5HLE A;  2KIN A;  2Q2Y A;  3CJO A;  5LT4 A;  1X88 A;  3WRD A;  3K5E A;  4B7B A;  1F9T A;  3PXN A;  4PJL A;  1VFW A;  2X7D A;  1SDM A;  2ZFL A;  3ZFC A;  4PFP A;  2VB6 A;  3X2T A;  1FMW A;  2OWM A;  4ZCA A;  4A50 A;  2Y5W A;  1I6I A;  4UBF A;  2WOG A;  1MMA A;  2HEH A;  1D0X A;  1Q0B A;  1RY6 A;  2XT3 A;  2X2R A;  5LT2 A;  1FMV A;  1D0Y A;  3KAR A;  3U06 A;  1MNE A;  1D1C A;  3ZCW A;  3DC4 A;  3L9H A;  2XAE A;  4A51 A;  4BBG A;  1N6M A;  3GBJ A;  1VFZ A;  5GSZ A;  4BXN A;  5LT0 A;  1F9V A;  1D1A A;  1MKJ A;  2GM1 A;  1V8J A;  4PK4 A;  4A1Z A;  3COB A;  2X51 A;  2FL2 A;  4A14 A;  3CNZ A;  3WPN A;  1KK7 A; 
#chains in the Genus database with same CATH topology
 3ZFD A;  2UYM A;  4AS7 A;  4ZHI A;  4A5Y A;  4E7S A;  2X7C A;  3HQD A;  1CZ7 A;  2ZFK A;  1MMG A;  1V8K A;  1I5S A;  4PJN A;  3KEN A;  1GOJ A;  2Q2Z A;  2VAS A;  3LRE A;  3L1C A;  1F9U A;  3H4S A;  2Y65 A;  2G1Q A;  2ZFI A;  1D0Z A;  1BR2 A;  4FRZ A;  2ZFM A;  2PG2 A;  4H1G A;  2V26 A;  1T5C A;  4ETP B;  4ETP A;  1VOM A;  4GKR A;  2FME A;  4PJJ A;  4DBQ A;  1LKX A;  1D1B A;  1II6 A;  4A28 A;  4GKP A;  4Y05 A;  2ZFJ A;  1BR4 A;  1G8X A;  2GRY A;  2UYI A;  3BFN A;  2O0A A;  4BN2 A;  2MYS A;  2FKY A;  2IEH A;  1F9W A;  4HNA K;  2X7E A;  4DBR A;  2FL6 A;  4PJM A;  4AP0 A;  2NCD A;  4ANJ A;  3K3B A;  1VFV A;  4PFO A;  5LT3 A;  3KIN A;  1LVK A;  3DCB A;  3B6U A;  4LNU K;  1YRS A;  4E7Z A;  1MMD A;  1MMN A;  3NWN A;  3T0Q A;  3B6V A;  1BG2 A;  1BR1 A;  4GKQ A;  2VVG A;  5LT1 A;  1VFX A;  5HLE A;  2KIN A;  2Q2Y A;  3CJO A;  5LT4 A;  1X88 A;  3WRD A;  3K5E A;  4B7B A;  1F9T A;  3PXN A;  4PJL A;  1VFW A;  2X7D A;  1SDM A;  2ZFL A;  3ZFC A;  4PFP A;  2VB6 A;  3X2T A;  1FMW A;  2OWM A;  4ZCA A;  4A50 A;  2Y5W A;  1I6I A;  4UBF A;  2WOG A;  1MMA A;  2HEH A;  1D0X A;  1Q0B A;  1RY6 A;  2XT3 A;  2X2R A;  5LT2 A;  1FMV A;  1D0Y A;  3KAR A;  3U06 A;  1MNE A;  1D1C A;  3ZCW A;  3DC4 A;  3L9H A;  2XAE A;  4A51 A;  4BBG A;  1N6M A;  3GBJ A;  1VFZ A;  5GSZ A;  4BXN A;  5LT0 A;  1F9V A;  1D1A A;  1MKJ A;  2GM1 A;  1V8J A;  4PK4 A;  4A1Z A;  3COB A;  2X51 A;  2FL2 A;  4A14 A;  3CNZ A;  3WPN A;  1KK7 A; 
#chains in the Genus database with same CATH homology
 3ZFD A;  2UYM A;  4AS7 A;  4ZHI A;  4A5Y A;  4E7S A;  2X7C A;  3HQD A;  1CZ7 A;  2ZFK A;  1MMG A;  1V8K A;  1I5S A;  4PJN A;  3KEN A;  1GOJ A;  2Q2Z A;  2VAS A;  3LRE A;  3L1C A;  1F9U A;  3H4S A;  2Y65 A;  2G1Q A;  2ZFI A;  1D0Z A;  1BR2 A;  4FRZ A;  2ZFM A;  2PG2 A;  4H1G A;  2V26 A;  1T5C A;  4ETP A;  1VOM A;  4GKR A;  2FME A;  4PJJ A;  4DBQ A;  1LKX A;  1D1B A;  1II6 A;  4A28 A;  4Y05 A;  2ZFJ A;  1BR4 A;  1G8X A;  2GRY A;  2UYI A;  3BFN A;  4BN2 A;  2MYS A;  2FKY A;  2IEH A;  1F9W A;  4HNA K;  2X7E A;  4DBR A;  2FL6 A;  4PJM A;  4AP0 A;  2NCD A;  4ANJ A;  3K3B A;  1VFV A;  4PFO A;  5LT3 A;  3KIN A;  1LVK A;  3DCB A;  3B6U A;  4LNU K;  1YRS A;  4E7Z A;  1MMD A;  1MMN A;  3NWN A;  3T0Q A;  3B6V A;  1BG2 A;  1BR1 A;  2VVG A;  5LT1 A;  1VFX A;  5HLE A;  2KIN A;  2Q2Y A;  3CJO A;  5LT4 A;  1X88 A;  3WRD A;  3K5E A;  4B7B A;  1F9T A;  3PXN A;  4PJL A;  1VFW A;  2X7D A;  1SDM A;  2ZFL A;  3ZFC A;  4PFP A;  2VB6 A;  3X2T A;  1FMW A;  2OWM A;  4ZCA A;  4A50 A;  2Y5W A;  1I6I A;  4UBF A;  2WOG A;  1MMA A;  2HEH A;  1D0X A;  1Q0B A;  1RY6 A;  2XT3 A;  2X2R A;  5LT2 A;  1FMV A;  1D0Y A;  3KAR A;  3U06 A;  1MNE A;  1D1C A;  3ZCW A;  3DC4 A;  3L9H A;  2XAE A;  4A51 A;  4BBG A;  1N6M A;  3GBJ A;  1VFZ A;  5GSZ A;  4BXN A;  5LT0 A;  1F9V A;  1D1A A;  1MKJ A;  2GM1 A;  1V8J A;  4PK4 A;  4A1Z A;  3COB A;  2X51 A;  2FL2 A;  4A14 A;  3CNZ A;  3WPN A;  1KK7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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