The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
100
|
sequence length |
389
|
structure length |
328
|
Chain Sequence |
KDPGANVRVVVRVRAFLPRELERNAECIVEMDPATERTSLLVPQLEEKSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAPVVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIMLKQIHTTERSSRIRLVDLAGSERSNINKSLTTLGRVIAALADVVPYRDSVLTWLLKDSLGGNSKTAMIACISPTDYDETLSTLRYADQAKRIRTRAVVNQV
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
X-ray Structure and Microtubule Interaction of the Motor Domain of Neurospora crassa NcKin3, a Kinesin with Unusual Processivity
pubmed doi rcsb |
| molecule tags |
Motor protein
|
| source organism |
Neurospora crassa
|
| molecule keywords |
Related to KINESIN-LIKE PROTEIN KIF1C
|
| total genus |
100
|
| structure length |
328
|
| sequence length |
389
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature |
ec
3.6.4.4: Transferred entry: 5.6.1.3. |
| pdb deposition date | 2007-02-16 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00225 | Kinesin | Kinesin motor domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Kinesin | Kinesin motor domain |
#chains in the Genus database with same CATH superfamily 4PJN A; 4A5Y A; 2WOG A; 3U06 A; 5LT0 A; 2FL2 A; 4DBQ A; 5LT2 A; 3WPN A; 1I5S A; 2VVG A; 4AS7 A; 4LNU K; 3NWN A; 3H4S A; 1BR4 A; 4A14 A; 3COB A; 1D1C A; 1X88 A; 1MNE A; 4Y05 A; 4A50 A; 2FL6 A; 4PFO A; 4ANJ A; 1F9V A; 1VFV A; 3KEN A; 2G1Q A; 2PG2 A; 1MKJ A; 1N6M A; 1BR1 A; 4UBF A; 4BXN A; 5LT1 A; 1VFX A; 2V26 A; 2ZFM A; 1D1B A; 1KK7 A; 3K3B A; 2Y65 A; 1FMV A; 2IEH A; 2X7C A; 3GBJ A; 1D1A A; 4E7Z A; 1RY6 A; 3K5E A; 1G8X A; 1MMN A; 1YRS A; 3HQD A; 1LKX A; 1Q0B A; 3T0Q A; 4B7B A; 1MMD A; 1F9T A; 1T5C A; 2MYS A; 1D0X A; 4BN2 A; 2NCD A; 2X7E A; 3BFN A; 3LRE A; 4PJM A; 1I6I A; 2XAE A; 1D0Z A; 2FKY A; 3KIN A; 2VB6 A; 2Y5W A; 1CZ7 A; 4BBG A; 2X51 A; 2GRY A; 2X7D A; 3B6U A; 2ZFL A; 3DCB A; 1VFW A; 2ZFI A; 2FME A; 2Q2Z A; 3KAR A; 4DBR A; 2GM1 A; 4FRZ A; 5GSZ A; 1BG2 A; 2UYI A; 3ZCW A; 3PXN A; 3L9H A; 1II6 A; 1VOM A; 4HNA K; 4PK4 A; 1F9W A; 2HEH A; 2ZFK A; 4A1Z A; 3ZFC A; 2XT3 A; 1GOJ A; 4A28 A; 1SDM A; 4AP0 A; 2OWM A; 1V8K A; 4H1G A; 3WRD A; 4ZCA A; 5LT4 A; 4ETP A; 1FMW A; 1MMG A; 4GKR A; 4PFP A; 4ZHI A; 1V8J A; 4PJL A; 3ZFD A; 3CNZ A; 1MMA A; 2UYM A; 4E7S A; 2KIN A; 4A51 A; 5LT3 A; 2Q2Y A; 1BR2 A; 1VFZ A; 3L1C A; 3B6V A; 1D0Y A; 4PJJ A; 3CJO A; 1F9U A; 2X2R A; 3X2T A; 1LVK A; 2VAS A; 5HLE A; 2ZFJ A; 3DC4 A; #chains in the Genus database with same CATH topology 4PJN A; 4A5Y A; 2WOG A; 3U06 A; 5LT0 A; 2FL2 A; 4DBQ A; 5LT2 A; 3WPN A; 1I5S A; 2VVG A; 4AS7 A; 4LNU K; 3NWN A; 3H4S A; 1BR4 A; 4GKQ A; 4A14 A; 3COB A; 1D1C A; 1X88 A; 1MNE A; 4Y05 A; 4A50 A; 2FL6 A; 4PFO A; 4ANJ A; 1F9V A; 1VFV A; 3KEN A; 2G1Q A; 2PG2 A; 1MKJ A; 1N6M A; 1BR1 A; 4UBF A; 4ETP B; 4BXN A; 5LT1 A; 1VFX A; 2V26 A; 2ZFM A; 1D1B A; 1KK7 A; 3K3B A; 2Y65 A; 1FMV A; 2IEH A; 2X7C A; 3GBJ A; 1D1A A; 4E7Z A; 1RY6 A; 3K5E A; 1G8X A; 1MMN A; 1YRS A; 3HQD A; 1LKX A; 1Q0B A; 3T0Q A; 4GKP A; 4B7B A; 1MMD A; 1F9T A; 1T5C A; 2MYS A; 1D0X A; 4BN2 A; 2NCD A; 2X7E A; 3BFN A; 3LRE A; 4PJM A; 1I6I A; 2XAE A; 1D0Z A; 2FKY A; 3KIN A; 2VB6 A; 2Y5W A; 1CZ7 A; 4BBG A; 2X51 A; 2GRY A; 2X7D A; 3B6U A; 2ZFL A; 3DCB A; 1VFW A; 2ZFI A; 2FME A; 2Q2Z A; 3KAR A; 4DBR A; 2GM1 A; 4FRZ A; 5GSZ A; 1BG2 A; 2UYI A; 3ZCW A; 3PXN A; 3L9H A; 1II6 A; 1VOM A; 4HNA K; 4PK4 A; 1F9W A; 2HEH A; 2ZFK A; 4A1Z A; 3ZFC A; 2XT3 A; 1GOJ A; 4A28 A; 1SDM A; 4AP0 A; 2OWM A; 1V8K A; 4H1G A; 3WRD A; 4ZCA A; 5LT4 A; 4ETP A; 1FMW A; 1MMG A; 2O0A A; 4GKR A; 4PFP A; 4ZHI A; 1V8J A; 4PJL A; 3ZFD A; 3CNZ A; 1MMA A; 2UYM A; 4E7S A; 2KIN A; 4A51 A; 5LT3 A; 2Q2Y A; 1BR2 A; 1VFZ A; 3L1C A; 3B6V A; 1D0Y A; 4PJJ A; 3CJO A; 1F9U A; 2X2R A; 3X2T A; 1LVK A; 2VAS A; 5HLE A; 2ZFJ A; 3DC4 A; #chains in the Genus database with same CATH homology 4PJN A; 4A5Y A; 2WOG A; 3U06 A; 5LT0 A; 2FL2 A; 4DBQ A; 5LT2 A; 3WPN A; 1I5S A; 2VVG A; 4AS7 A; 4LNU K; 3NWN A; 3H4S A; 1BR4 A; 4A14 A; 3COB A; 1D1C A; 1X88 A; 1MNE A; 4Y05 A; 4A50 A; 2FL6 A; 4PFO A; 4ANJ A; 1F9V A; 1VFV A; 3KEN A; 2G1Q A; 2PG2 A; 1MKJ A; 1N6M A; 1BR1 A; 4UBF A; 4BXN A; 5LT1 A; 1VFX A; 2V26 A; 2ZFM A; 1D1B A; 1KK7 A; 3K3B A; 2Y65 A; 1FMV A; 2IEH A; 2X7C A; 3GBJ A; 1D1A A; 4E7Z A; 1RY6 A; 3K5E A; 1G8X A; 1MMN A; 1YRS A; 3HQD A; 1LKX A; 1Q0B A; 3T0Q A; 4B7B A; 1MMD A; 1F9T A; 1T5C A; 2MYS A; 1D0X A; 4BN2 A; 2NCD A; 2X7E A; 3BFN A; 3LRE A; 4PJM A; 1I6I A; 2XAE A; 1D0Z A; 2FKY A; 3KIN A; 2VB6 A; 2Y5W A; 1CZ7 A; 4BBG A; 2X51 A; 2GRY A; 2X7D A; 3B6U A; 2ZFL A; 3DCB A; 1VFW A; 2ZFI A; 2FME A; 2Q2Z A; 3KAR A; 4DBR A; 2GM1 A; 4FRZ A; 5GSZ A; 1BG2 A; 2UYI A; 3ZCW A; 3PXN A; 3L9H A; 1II6 A; 1VOM A; 4HNA K; 4PK4 A; 1F9W A; 2HEH A; 2ZFK A; 4A1Z A; 3ZFC A; 2XT3 A; 1GOJ A; 4A28 A; 1SDM A; 4AP0 A; 2OWM A; 1V8K A; 4H1G A; 3WRD A; 4ZCA A; 5LT4 A; 4ETP A; 1FMW A; 1MMG A; 4GKR A; 4PFP A; 4ZHI A; 1V8J A; 4PJL A; 3ZFD A; 3CNZ A; 1MMA A; 2UYM A; 4E7S A; 2KIN A; 4A51 A; 5LT3 A; 2Q2Y A; 1BR2 A; 1VFZ A; 3L1C A; 3B6V A; 1D0Y A; 4PJJ A; 3CJO A; 1F9U A; 2X2R A; 3X2T A; 1LVK A; 2VAS A; 5HLE A; 2ZFJ A; 3DC4 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
