2ZFJA

Crystal structure of the kif1a motor domain during mg release: mg-releasing transition-1
Total Genus 88

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
88
sequence length
348
structure length
309
Chain Sequence
SVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLAGSEKEGANINKSLTTLGKVISALAIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS4 (48-49)TVIII2 (52-55)AH6 (266-286)S1 (7-12)S5 (54-57)S6 (91-96)AH1 (17-22)TIV2 (31-34)S2 (28-30)TIV1 (30-33)TIV4 (42-45)TIV6 (61-64)TIV5 (58-61)TII1 (98-101)TIV7 (64-67)TII2 (111-114)AH2 (70-87)TIV14 (231-234)TIV15 (232-235)AH5 (189-201)AH3 (103-108)TIV8 (112-115)AH4 (118-132)S7 (138-150)TII3 (178-181)TIV9 (149-152)S10 (175-178)TIV12 (171-174)TIV16 (305-308)TI1 (135-138)S13 (236-248)S8 (153-156)S9 (168-171)S11 (184-186)S12 (218-231)O2 (250-252)Updating...
connected with : NaN
molecule tags Transport protein
source organism Mus musculus
publication title Structural model for strain-dependent microtubule activation of Mg-ADP release from kinesin.
pubmed doi rcsb
molecule keywords Kinesin-like protein KIF1A, Kinesin heavy chain isoform 5C
total genus 88
structure length 309
sequence length 348
ec nomenclature
pdb deposition date 2008-01-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00225 Kinesin Kinesin motor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.850.10 Alpha Beta 3-Layer(aba) Sandwich Kinesin Kinesin motor domain 2zfjA00
2V26A 1V8KA 3T0QA 2KINA 4GKRA 2HEHA 3GBJA 1CZ7A 1MMAA 3KENA 2IEHA 1VOMA 2UYMA 4A50A 1D1BA 1BR2A 3L1CA 1T5CA 3B6UA 3LREA 1II6A 4BN2A 1MKJA 1VFXA 3K5EA 1MMDA 1FMVA 3DC4A 2X7CA 2Q2YA 5GSZA 4ZCAA 1RY6A 2FL6A 1N6MA 2ZFKA 3NWNA 2XAEA 5LT0A 2FKYA 2VASA 4A28A 1X88A 3ZFCA 5HLEA 1F9TA 4PK4A 1GOJA 3DCBA 2X2RA 1G8XA 2OWMA 4DBQA 2Q2ZA 5LT3A 1BR4A 4A51A 3K3BA 4FRZA 1KK7A 2MYSA 3WRDA 3H4SA 3CNZA 1BR1A 4ETPA 1SDMA 2ZFLA 3B6VA 4PFPA 2ZFJA 4BBGA 3ZFDA 1MNEA 2X7EA 4A1ZA 3X2TA 1YRSA 4Y05A 2Y5WA 3U06A 1D1AA 1D0YA 1F9WA 1VFVA 2WOGA 3COBA 3CJOA 4B7BA 4BXNA 1LKXA 3KARA 4PJNA 1I5SA 4AS7A 4HNAK 3PXNA 1LVKA 2PG2A 4E7SA 1V8JA 2X51A 1Q0BA 2NCDA 2G1QA 4DBRA 4ANJA 2VB6A 2X7DA 2Y65A 4UBFA 4PFOA 4PJJA 4PJLA 2ZFMA 2ZFIA 1D0XA 2GM1A 1I6IA 1MMNA 4A14A 1VFZA 3HQDA 2FMEA 1BG2A 4AP0A 4H1GA 4A5YA 3KINA 4E7ZA 5LT4A 4ZHIA 1D1CA 1VFWA 4LNUK 2UYIA 3L9HA 3BFNA 2FL2A 3ZCWA 1F9UA 5LT1A 3WPNA 1FMWA 1MMGA 1D0ZA 1F9VA 2XT3A 4PJMA 5LT2A 2GRYA 2VVGA
chains in the Genus database with same CATH superfamily
2V26A 1V8KA 3T0QA 2KINA 4GKRA 2HEHA 3GBJA 1CZ7A 1MMAA 3KENA 2IEHA 1VOMA 2UYMA 4A50A 1D1BA 1BR2A 3L1CA 1T5CA 3B6UA 3LREA 1II6A 4BN2A 1MKJA 1VFXA 3K5EA 4GKQA 1MMDA 1FMVA 3DC4A 2X7CA 2Q2YA 5GSZA 4ZCAA 1RY6A 2FL6A 4ETPB 1N6MA 2ZFKA 3NWNA 2XAEA 5LT0A 2FKYA 2VASA 4A28A 1X88A 3ZFCA 5HLEA 1F9TA 4PK4A 1GOJA 3DCBA 2X2RA 1G8XA 2OWMA 4DBQA 2Q2ZA 5LT3A 1BR4A 4A51A 3K3BA 4FRZA 1KK7A 2MYSA 3WRDA 3H4SA 3CNZA 1BR1A 4ETPA 1SDMA 2ZFLA 3B6VA 4PFPA 2ZFJA 4BBGA 3ZFDA 1MNEA 2O0AA 2X7EA 4A1ZA 3X2TA 1YRSA 4Y05A 2Y5WA 3U06A 1D1AA 1D0YA 1F9WA 1VFVA 2WOGA 3COBA 3CJOA 4B7BA 4BXNA 1LKXA 3KARA 4PJNA 1I5SA 4AS7A 4HNAK 3PXNA 1LVKA 2PG2A 4E7SA 1V8JA 2X51A 1Q0BA 2NCDA 2G1QA 4DBRA 4ANJA 2VB6A 2X7DA 2Y65A 4UBFA 4PFOA 4PJJA 4PJLA 2ZFMA 2ZFIA 1D0XA 2GM1A 1I6IA 1MMNA 4A14A 1VFZA 3HQDA 2FMEA 1BG2A 4AP0A 4H1GA 4A5YA 3KINA 4E7ZA 5LT4A 4ZHIA 1D1CA 1VFWA 4LNUK 2UYIA 3L9HA 4GKPA 2FL2A 3BFNA 1F9UA 3ZCWA 3WPNA 5LT1A 1FMWA 1MMGA 1D0ZA 1F9VA 2XT3A 4PJMA 5LT2A 2GRYA 2VVGA
chains in the Genus database with same CATH topology
2V26A 1V8KA 3T0QA 2KINA 4GKRA 2HEHA 3GBJA 1CZ7A 1MMAA 3KENA 2IEHA 1VOMA 2UYMA 4A50A 1D1BA 1BR2A 3L1CA 1T5CA 3B6UA 3LREA 1II6A 4BN2A 1MKJA 1VFXA 3K5EA 1MMDA 1FMVA 3DC4A 2X7CA 2Q2YA 5GSZA 4ZCAA 1RY6A 2FL6A 1N6MA 2ZFKA 3NWNA 2XAEA 5LT0A 2FKYA 2VASA 4A28A 1X88A 3ZFCA 5HLEA 1F9TA 4PK4A 1GOJA 3DCBA 2X2RA 1G8XA 2OWMA 4DBQA 2Q2ZA 5LT3A 1BR4A 4A51A 3K3BA 4FRZA 1KK7A 2MYSA 3WRDA 3H4SA 3CNZA 1BR1A 4ETPA 1SDMA 2ZFLA 3B6VA 4PFPA 2ZFJA 4BBGA 3ZFDA 1MNEA 2X7EA 4A1ZA 3X2TA 1YRSA 4Y05A 2Y5WA 3U06A 1D1AA 1D0YA 1F9WA 1VFVA 2WOGA 3COBA 3CJOA 4B7BA 4BXNA 1LKXA 3KARA 4PJNA 1I5SA 4AS7A 4HNAK 3PXNA 1LVKA 2PG2A 4E7SA 1V8JA 2X51A 1Q0BA 2NCDA 2G1QA 4DBRA 4ANJA 2VB6A 2X7DA 2Y65A 4UBFA 4PFOA 4PJJA 4PJLA 2ZFMA 2ZFIA 1D0XA 2GM1A 1I6IA 1MMNA 4A14A 1VFZA 3HQDA 2FMEA 1BG2A 4AP0A 4H1GA 4A5YA 3KINA 4E7ZA 5LT4A 4ZHIA 1D1CA 1VFWA 4LNUK 2UYIA 3L9HA 3BFNA 2FL2A 3ZCWA 1F9UA 5LT1A 3WPNA 1FMWA 1MMGA 1D0ZA 1F9VA 2XT3A 4PJMA 5LT2A 2GRYA 2VVGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2V26 A;  1V8K A;  3T0Q A;  2KIN A;  4GKR A;  2HEH A;  3GBJ A;  1CZ7 A;  1MMA A;  3KEN A;  2IEH A;  1VOM A;  2UYM A;  4A50 A;  1D1B A;  1BR2 A;  3L1C A;  1T5C A;  3B6U A;  3LRE A;  1II6 A;  4BN2 A;  1MKJ A;  1VFX A;  3K5E A;  1MMD A;  1FMV A;  3DC4 A;  2X7C A;  2Q2Y A;  5GSZ A;  4ZCA A;  1RY6 A;  2FL6 A;  1N6M A;  2ZFK A;  3NWN A;  2XAE A;  5LT0 A;  2FKY A;  2VAS A;  4A28 A;  1X88 A;  3ZFC A;  5HLE A;  1F9T A;  4PK4 A;  1GOJ A;  3DCB A;  2X2R A;  1G8X A;  2OWM A;  4DBQ A;  2Q2Z A;  5LT3 A;  1BR4 A;  4A51 A;  3K3B A;  4FRZ A;  1KK7 A;  2MYS A;  3WRD A;  3H4S A;  3CNZ A;  1BR1 A;  4ETP A;  1SDM A;  2ZFL A;  3B6V A;  4PFP A;  2ZFJ A;  4BBG A;  3ZFD A;  1MNE A;  2X7E A;  4A1Z A;  3X2T A;  1YRS A;  4Y05 A;  2Y5W A;  3U06 A;  1D1A A;  1D0Y A;  1F9W A;  1VFV A;  2WOG A;  3COB A;  3CJO A;  4B7B A;  4BXN A;  1LKX A;  3KAR A;  4PJN A;  1I5S A;  4AS7 A;  4HNA K;  3PXN A;  1LVK A;  2PG2 A;  4E7S A;  1V8J A;  2X51 A;  1Q0B A;  2NCD A;  2G1Q A;  4DBR A;  4ANJ A;  2VB6 A;  2X7D A;  2Y65 A;  4UBF A;  4PFO A;  4PJJ A;  4PJL A;  2ZFM A;  2ZFI A;  1D0X A;  2GM1 A;  1I6I A;  1MMN A;  4A14 A;  1VFZ A;  3HQD A;  2FME A;  1BG2 A;  4AP0 A;  4H1G A;  4A5Y A;  3KIN A;  4E7Z A;  5LT4 A;  4ZHI A;  1D1C A;  1VFW A;  4LNU K;  2UYI A;  3L9H A;  3BFN A;  2FL2 A;  3ZCW A;  1F9U A;  5LT1 A;  3WPN A;  1FMW A;  1MMG A;  1D0Z A;  1F9V A;  2XT3 A;  4PJM A;  5LT2 A;  2GRY A;  2VVG A; 
#chains in the Genus database with same CATH topology
 2V26 A;  1V8K A;  3T0Q A;  2KIN A;  4GKR A;  2HEH A;  3GBJ A;  1CZ7 A;  1MMA A;  3KEN A;  2IEH A;  1VOM A;  2UYM A;  4A50 A;  1D1B A;  1BR2 A;  3L1C A;  1T5C A;  3B6U A;  3LRE A;  1II6 A;  4BN2 A;  1MKJ A;  1VFX A;  3K5E A;  4GKQ A;  1MMD A;  1FMV A;  3DC4 A;  2X7C A;  2Q2Y A;  5GSZ A;  4ZCA A;  1RY6 A;  2FL6 A;  4ETP B;  1N6M A;  2ZFK A;  3NWN A;  2XAE A;  5LT0 A;  2FKY A;  2VAS A;  4A28 A;  1X88 A;  3ZFC A;  5HLE A;  1F9T A;  4PK4 A;  1GOJ A;  3DCB A;  2X2R A;  1G8X A;  2OWM A;  4DBQ A;  2Q2Z A;  5LT3 A;  1BR4 A;  4A51 A;  3K3B A;  4FRZ A;  1KK7 A;  2MYS A;  3WRD A;  3H4S A;  3CNZ A;  1BR1 A;  4ETP A;  1SDM A;  2ZFL A;  3B6V A;  4PFP A;  2ZFJ A;  4BBG A;  3ZFD A;  1MNE A;  2O0A A;  2X7E A;  4A1Z A;  3X2T A;  1YRS A;  4Y05 A;  2Y5W A;  3U06 A;  1D1A A;  1D0Y A;  1F9W A;  1VFV A;  2WOG A;  3COB A;  3CJO A;  4B7B A;  4BXN A;  1LKX A;  3KAR A;  4PJN A;  1I5S A;  4AS7 A;  4HNA K;  3PXN A;  1LVK A;  2PG2 A;  4E7S A;  1V8J A;  2X51 A;  1Q0B A;  2NCD A;  2G1Q A;  4DBR A;  4ANJ A;  2VB6 A;  2X7D A;  2Y65 A;  4UBF A;  4PFO A;  4PJJ A;  4PJL A;  2ZFM A;  2ZFI A;  1D0X A;  2GM1 A;  1I6I A;  1MMN A;  4A14 A;  1VFZ A;  3HQD A;  2FME A;  1BG2 A;  4AP0 A;  4H1G A;  4A5Y A;  3KIN A;  4E7Z A;  5LT4 A;  4ZHI A;  1D1C A;  1VFW A;  4LNU K;  2UYI A;  3L9H A;  4GKP A;  2FL2 A;  3BFN A;  1F9U A;  3ZCW A;  3WPN A;  5LT1 A;  1FMW A;  1MMG A;  1D0Z A;  1F9V A;  2XT3 A;  4PJM A;  5LT2 A;  2GRY A;  2VVG A; 
#chains in the Genus database with same CATH homology
 2V26 A;  1V8K A;  3T0Q A;  2KIN A;  4GKR A;  2HEH A;  3GBJ A;  1CZ7 A;  1MMA A;  3KEN A;  2IEH A;  1VOM A;  2UYM A;  4A50 A;  1D1B A;  1BR2 A;  3L1C A;  1T5C A;  3B6U A;  3LRE A;  1II6 A;  4BN2 A;  1MKJ A;  1VFX A;  3K5E A;  1MMD A;  1FMV A;  3DC4 A;  2X7C A;  2Q2Y A;  5GSZ A;  4ZCA A;  1RY6 A;  2FL6 A;  1N6M A;  2ZFK A;  3NWN A;  2XAE A;  5LT0 A;  2FKY A;  2VAS A;  4A28 A;  1X88 A;  3ZFC A;  5HLE A;  1F9T A;  4PK4 A;  1GOJ A;  3DCB A;  2X2R A;  1G8X A;  2OWM A;  4DBQ A;  2Q2Z A;  5LT3 A;  1BR4 A;  4A51 A;  3K3B A;  4FRZ A;  1KK7 A;  2MYS A;  3WRD A;  3H4S A;  3CNZ A;  1BR1 A;  4ETP A;  1SDM A;  2ZFL A;  3B6V A;  4PFP A;  2ZFJ A;  4BBG A;  3ZFD A;  1MNE A;  2X7E A;  4A1Z A;  3X2T A;  1YRS A;  4Y05 A;  2Y5W A;  3U06 A;  1D1A A;  1D0Y A;  1F9W A;  1VFV A;  2WOG A;  3COB A;  3CJO A;  4B7B A;  4BXN A;  1LKX A;  3KAR A;  4PJN A;  1I5S A;  4AS7 A;  4HNA K;  3PXN A;  1LVK A;  2PG2 A;  4E7S A;  1V8J A;  2X51 A;  1Q0B A;  2NCD A;  2G1Q A;  4DBR A;  4ANJ A;  2VB6 A;  2X7D A;  2Y65 A;  4UBF A;  4PFO A;  4PJJ A;  4PJL A;  2ZFM A;  2ZFI A;  1D0X A;  2GM1 A;  1I6I A;  1MMN A;  4A14 A;  1VFZ A;  3HQD A;  2FME A;  1BG2 A;  4AP0 A;  4H1G A;  4A5Y A;  3KIN A;  4E7Z A;  5LT4 A;  4ZHI A;  1D1C A;  1VFW A;  4LNU K;  2UYI A;  3L9H A;  3BFN A;  2FL2 A;  3ZCW A;  1F9U A;  5LT1 A;  3WPN A;  1FMW A;  1MMG A;  1D0Z A;  1F9V A;  2XT3 A;  4PJM A;  5LT2 A;  2GRY A;  2VVG A; 
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