3COB | Genus

Total Genus 115

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	115
sequence length	366
structure length	355
Chain Sequence	KGKIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSSKEVARLKKLVSYWELEEIQDE

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Motor protein
source organism	Solanum tuberosum
publication title	Structural dynamics of the microtubule binding and regulatory elements in the kinesin-like calmodulin binding protein. pubmed doi rcsb
molecule keywords	Kinesin heavy chain-like protein
total genus	115
structure length	355
sequence length	366
chains with identical sequence	C
ec nomenclature
pdb deposition date	2008-03-27

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00225	Kinesin	Kinesin motor domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.40.850.10	Alpha Beta	3-Layer(aba) Sandwich	Kinesin	Kinesin motor domain	3cobA00

3X2TA 5LT0A 1I5SA 4HNAK 1T5CA 3K5EA 2Q2ZA 1MNEA 1MMGA 1VFWA 5LT3A 2X51A 2FMEA 2X7EA 1MMAA 1YRSA 1MKJA 2X2RA 1RY6A 1GOJA 2KINA 5GSZA 2XAEA 1V8KA 1F9UA 4H1GA 4AP0A 5LT4A 1I6IA 4ZCAA 1F9VA 1SDMA 3PXNA 4BXNA 4A28A 4ANJA 2WOGA 2Y65A 3L9HA 5LT1A 2MYSA 2VVGA 4E7ZA 4ZHIA 1BR2A 3KINA 5LT2A 2X7DA 1D0XA 2XT3A 4PJJA 2GM1A 4UBFA 1MMDA 1D1BA 3ZCWA 3CNZA 3U06A 1BG2A 1VFZA 1KK7A 3L1CA 3NWNA 1LVKA 2PG2A 4AS7A 2ZFKA 2UYIA 4FRZA 3KENA 4DBQA 4PFPA 2IEHA 4E7SA 2X7CA 2GRYA 1BR1A 2UYMA 2ZFLA 3WPNA 3K3BA 2ZFIA 2FL6A 2HEHA 4PJMA 3GBJA 1D1AA 4Y05A 3DC4A 4PJLA 1D1CA 2VB6A 4A51A 1N6MA 4A1ZA 1VFXA 4LNUK 5HLEA 2Y5WA 3BFNA 2Q2YA 2G1QA 1FMVA 2VASA 3B6VA 1MMNA 1F9TA 2ZFJA 1F9WA 2ZFMA 4BN2A 3B6UA 3LREA 4GKRA 1Q0BA 3H4SA 4B7BA 2FL2A 1VFVA 1CZ7A 2OWMA 1VOMA 1V8JA 1D0ZA 1D0YA 4ETPA 1BR4A 1X88A 3KARA 4A14A 3WRDA 4A50A 4PK4A 2NCDA 4PJNA 3CJOA 2FKYA 4DBRA 1II6A 1FMWA 3HQDA 3ZFDA 4A5YA 2V26A 4BBGA 3COBA 3T0QA 3DCBA 1LKXA 3ZFCA 4PFOA 1G8XA
chains in the Genus database with same CATH superfamily

3X2TA 5LT0A 1I5SA 4HNAK 1T5CA 3K5EA 2Q2ZA 1MNEA 1MMGA 1VFWA 5LT3A 2X51A 2FMEA 4GKQA 2X7EA 1MMAA 1YRSA 1MKJA 2X2RA 1RY6A 1GOJA 2KINA 5GSZA 2XAEA 1V8KA 1F9UA 4H1GA 4AP0A 5LT4A 1I6IA 4ZCAA 1F9VA 1SDMA 3PXNA 4BXNA 4A28A 4ETPB 4ANJA 2WOGA 2Y65A 3L9HA 5LT1A 2MYSA 2VVGA 4E7ZA 4ZHIA 1BR2A 3KINA 5LT2A 2X7DA 1D0XA 2XT3A 4PJJA 2GM1A 4UBFA 1MMDA 1D1BA 3ZCWA 3CNZA 3U06A 1BG2A 1VFZA 1KK7A 3L1CA 2O0AA 3NWNA 1LVKA 2PG2A 4AS7A 2ZFKA 2UYIA 4FRZA 3KENA 4DBQA 4PFPA 2IEHA 4E7SA 2X7CA 2GRYA 1BR1A 2UYMA 2ZFLA 3WPNA 3K3BA 2ZFIA 2FL6A 2HEHA 4PJMA 3GBJA 1D1AA 4Y05A 3DC4A 4PJLA 1D1CA 4GKPA 2VB6A 4A51A 1N6MA 4A1ZA 1VFXA 4LNUK 5HLEA 2Y5WA 3BFNA 2Q2YA 2G1QA 1FMVA 2VASA 3B6VA 1MMNA 1F9TA 2ZFJA 1F9WA 2ZFMA 4BN2A 3B6UA 3LREA 4GKRA 1Q0BA 3H4SA 4B7BA 2FL2A 1VFVA 1CZ7A 2OWMA 1VOMA 1V8JA 1D0ZA 1D0YA 4ETPA 1BR4A 1X88A 3KARA 4A14A 3WRDA 4A50A 4PK4A 2NCDA 4PJNA 3CJOA 2FKYA 4DBRA 1II6A 1FMWA 3HQDA 3ZFDA 4A5YA 2V26A 4BBGA 3COBA 3T0QA 3DCBA 1LKXA 3ZFCA 4PFOA 1G8XA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3X2T A;  5LT0 A;  1I5S A;  4HNA K;  1T5C A;  3K5E A;  2Q2Z A;  1MNE A;  1MMG A;  1VFW A;  5LT3 A;  2X51 A;  2FME A;  2X7E A;  1MMA A;  1YRS A;  1MKJ A;  2X2R A;  1RY6 A;  1GOJ A;  2KIN A;  5GSZ A;  2XAE A;  1V8K A;  1F9U A;  4H1G A;  4AP0 A;  5LT4 A;  1I6I A;  4ZCA A;  1F9V A;  1SDM A;  3PXN A;  4BXN A;  4A28 A;  4ANJ A;  2WOG A;  2Y65 A;  3L9H A;  5LT1 A;  2MYS A;  2VVG A;  4E7Z A;  4ZHI A;  1BR2 A;  3KIN A;  5LT2 A;  2X7D A;  1D0X A;  2XT3 A;  4PJJ A;  2GM1 A;  4UBF A;  1MMD A;  1D1B A;  3ZCW A;  3CNZ A;  3U06 A;  1BG2 A;  1VFZ A;  1KK7 A;  3L1C A;  3NWN A;  1LVK A;  2PG2 A;  4AS7 A;  2ZFK A;  2UYI A;  4FRZ A;  3KEN A;  4DBQ A;  4PFP A;  2IEH A;  4E7S A;  2X7C A;  2GRY A;  1BR1 A;  2UYM A;  2ZFL A;  3WPN A;  3K3B A;  2ZFI A;  2FL6 A;  2HEH A;  4PJM A;  3GBJ A;  1D1A A;  4Y05 A;  3DC4 A;  4PJL A;  1D1C A;  2VB6 A;  4A51 A;  1N6M A;  4A1Z A;  1VFX A;  4LNU K;  5HLE A;  2Y5W A;  3BFN A;  2Q2Y A;  2G1Q A;  1FMV A;  2VAS A;  3B6V A;  1MMN A;  1F9T A;  2ZFJ A;  1F9W A;  2ZFM A;  4BN2 A;  3B6U A;  3LRE A;  4GKR A;  1Q0B A;  3H4S A;  4B7B A;  2FL2 A;  1VFV A;  1CZ7 A;  2OWM A;  1VOM A;  1V8J A;  1D0Z A;  1D0Y A;  4ETP A;  1BR4 A;  1X88 A;  3KAR A;  4A14 A;  3WRD A;  4A50 A;  4PK4 A;  2NCD A;  4PJN A;  3CJO A;  2FKY A;  4DBR A;  1II6 A;  1FMW A;  3HQD A;  3ZFD A;  4A5Y A;  2V26 A;  4BBG A;  3COB A;  3T0Q A;  3DCB A;  1LKX A;  3ZFC A;  4PFO A;  1G8X A; 
#chains in the Genus database with same CATH topology
 3X2T A;  5LT0 A;  1I5S A;  4HNA K;  1T5C A;  3K5E A;  2Q2Z A;  1MNE A;  1MMG A;  1VFW A;  5LT3 A;  2X51 A;  2FME A;  4GKQ A;  2X7E A;  1MMA A;  1YRS A;  1MKJ A;  2X2R A;  1RY6 A;  1GOJ A;  2KIN A;  5GSZ A;  2XAE A;  1V8K A;  1F9U A;  4H1G A;  4AP0 A;  5LT4 A;  1I6I A;  4ZCA A;  1F9V A;  1SDM A;  3PXN A;  4BXN A;  4A28 A;  4ETP B;  4ANJ A;  2WOG A;  2Y65 A;  3L9H A;  5LT1 A;  2MYS A;  2VVG A;  4E7Z A;  4ZHI A;  1BR2 A;  3KIN A;  5LT2 A;  2X7D A;  1D0X A;  2XT3 A;  4PJJ A;  2GM1 A;  4UBF A;  1MMD A;  1D1B A;  3ZCW A;  3CNZ A;  3U06 A;  1BG2 A;  1VFZ A;  1KK7 A;  3L1C A;  2O0A A;  3NWN A;  1LVK A;  2PG2 A;  4AS7 A;  2ZFK A;  2UYI A;  4FRZ A;  3KEN A;  4DBQ A;  4PFP A;  2IEH A;  4E7S A;  2X7C A;  2GRY A;  1BR1 A;  2UYM A;  2ZFL A;  3WPN A;  3K3B A;  2ZFI A;  2FL6 A;  2HEH A;  4PJM A;  3GBJ A;  1D1A A;  4Y05 A;  3DC4 A;  4PJL A;  1D1C A;  4GKP A;  2VB6 A;  4A51 A;  1N6M A;  4A1Z A;  1VFX A;  4LNU K;  5HLE A;  2Y5W A;  3BFN A;  2Q2Y A;  2G1Q A;  1FMV A;  2VAS A;  3B6V A;  1MMN A;  1F9T A;  2ZFJ A;  1F9W A;  2ZFM A;  4BN2 A;  3B6U A;  3LRE A;  4GKR A;  1Q0B A;  3H4S A;  4B7B A;  2FL2 A;  1VFV A;  1CZ7 A;  2OWM A;  1VOM A;  1V8J A;  1D0Z A;  1D0Y A;  4ETP A;  1BR4 A;  1X88 A;  3KAR A;  4A14 A;  3WRD A;  4A50 A;  4PK4 A;  2NCD A;  4PJN A;  3CJO A;  2FKY A;  4DBR A;  1II6 A;  1FMW A;  3HQD A;  3ZFD A;  4A5Y A;  2V26 A;  4BBG A;  3COB A;  3T0Q A;  3DCB A;  1LKX A;  3ZFC A;  4PFO A;  1G8X A; 
#chains in the Genus database with same CATH homology
 3X2T A;  5LT0 A;  1I5S A;  4HNA K;  1T5C A;  3K5E A;  2Q2Z A;  1MNE A;  1MMG A;  1VFW A;  5LT3 A;  2X51 A;  2FME A;  2X7E A;  1MMA A;  1YRS A;  1MKJ A;  2X2R A;  1RY6 A;  1GOJ A;  2KIN A;  5GSZ A;  2XAE A;  1V8K A;  1F9U A;  4H1G A;  4AP0 A;  5LT4 A;  1I6I A;  4ZCA A;  1F9V A;  1SDM A;  3PXN A;  4BXN A;  4A28 A;  4ANJ A;  2WOG A;  2Y65 A;  3L9H A;  5LT1 A;  2MYS A;  2VVG A;  4E7Z A;  4ZHI A;  1BR2 A;  3KIN A;  5LT2 A;  2X7D A;  1D0X A;  2XT3 A;  4PJJ A;  2GM1 A;  4UBF A;  1MMD A;  1D1B A;  3ZCW A;  3CNZ A;  3U06 A;  1BG2 A;  1VFZ A;  1KK7 A;  3L1C A;  3NWN A;  1LVK A;  2PG2 A;  4AS7 A;  2ZFK A;  2UYI A;  4FRZ A;  3KEN A;  4DBQ A;  4PFP A;  2IEH A;  4E7S A;  2X7C A;  2GRY A;  1BR1 A;  2UYM A;  2ZFL A;  3WPN A;  3K3B A;  2ZFI A;  2FL6 A;  2HEH A;  4PJM A;  3GBJ A;  1D1A A;  4Y05 A;  3DC4 A;  4PJL A;  1D1C A;  2VB6 A;  4A51 A;  1N6M A;  4A1Z A;  1VFX A;  4LNU K;  5HLE A;  2Y5W A;  3BFN A;  2Q2Y A;  2G1Q A;  1FMV A;  2VAS A;  3B6V A;  1MMN A;  1F9T A;  2ZFJ A;  1F9W A;  2ZFM A;  4BN2 A;  3B6U A;  3LRE A;  4GKR A;  1Q0B A;  3H4S A;  4B7B A;  2FL2 A;  1VFV A;  1CZ7 A;  2OWM A;  1VOM A;  1V8J A;  1D0Z A;  1D0Y A;  4ETP A;  1BR4 A;  1X88 A;  3KAR A;  4A14 A;  3WRD A;  4A50 A;  4PK4 A;  2NCD A;  4PJN A;  3CJO A;  2FKY A;  4DBR A;  1II6 A;  1FMW A;  3HQD A;  3ZFD A;  4A5Y A;  2V26 A;  4BBG A;  3COB A;  3T0Q A;  3DCB A;  1LKX A;  3ZFC A;  4PFO A;  1G8X A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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3COBA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations