3H4SA

Structure of the complex of a mitotic kinesin with its calcium binding regulator
Total Genus 117
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
117
sequence length
376
structure length
359
Chain Sequence
YMKGKIRVYCRIRPLNEKESSEREKQMLTTVDEFTVEHPWKDDKRKQHIYDRVFDMRASQDDIFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGHESNPGLTPRATKELFNILKRDSKRFSFSLKAYMVELYQDTLVDLLLPKRLKLEIKKDSKGMVFVENVTTIPISTLEELRMILERGSEREESSRSHLILSVVIESIDLQTQSAARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVIGALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLDETYNSLLYASRVRTIVNDPSKHISSKEMVRLKKLVAYWKEQAGKKGEEEDLVDIEEDRTR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structure of the complex of a mitotic kinesin with its calcium binding regulator.
pubmed doi rcsb
molecule tags Motor protein/calcium binding protein
source organism Arabidopsis thaliana
molecule keywords Kinesin-like calmodulin-binding protein
total genus 117
structure length 359
sequence length 376
ec nomenclature
pdb deposition date 2009-04-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00225 Kinesin Kinesin motor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.850.10 Alpha Beta 3-Layer(aba) Sandwich Kinesin Kinesin motor domain 3h4sA01
4H1GA 2WOGA 2ZFLA 2FL6A 3KINA 4PJLA 5LT3A 2GM1A 2KINA 1MMGA 3LREA 1VFVA 5LT4A 4A14A 1SDMA 2X2RA 5LT1A 3DCBA 2UYIA 1F9TA 4ZCAA 4Y05A 3K5EA 1D1AA 3COBA 4PFOA 2VB6A 1II6A 1VFZA 1YRSA 3ZFDA 4ANJA 4A1ZA 1X88A 4FRZA 2ZFIA 4ETPA 2FL2A 1F9UA 3ZFCA 4A51A 3B6VA 3K3BA 1N6MA 4A50A 1BR4A 1BR1A 1T5CA 2X7DA 4LNUK 3GBJA 1D1BA 1VOMA 2XAEA 2ZFJA 2X7CA 4HNAK 3U06A 4ZHIA 1MMAA 4PJNA 1I6IA 1LVKA 1MMNA 2MYSA 3CJOA 4PJJA 2V26A 2IEHA 4DBRA 2XT3A 4GKRA 4A5YA 3WRDA 3T0QA 1G8XA 1KK7A 4PJMA 2GRYA 2ZFKA 1BR2A 5GSZA 2PG2A 5LT2A 1D0ZA 1V8KA 3CNZA 2FKYA 3WPNA 1MMDA 1RY6A 3KENA 4UBFA 3HQDA 2X51A 1VFXA 1D0YA 3L1CA 4BXNA 1MKJA 1LKXA 1V8JA 2Q2ZA 1CZ7A 3X2TA 4PK4A 4B7BA 4E7SA 4BN2A 3NWNA 2HEHA 4A28A 2Y5WA 2FMEA 2NCDA 2X7EA 3H4SA 3BFNA 3ZCWA 4AS7A 3DC4A 1FMVA 2VASA 1GOJA 1F9WA 1MNEA 1D1CA 2OWMA 4AP0A 3PXNA 4DBQA 2VVGA 5HLEA 1BG2A 1VFWA 3L9HA 1I5SA 1Q0BA 4BBGA 3B6UA 2ZFMA 2UYMA 1FMWA 3KARA 4E7ZA 2Q2YA 2Y65A 5LT0A 1F9VA 4PFPA 1D0XA 2G1QA
chains in the Genus database with same CATH superfamily
4H1GA 2WOGA 2ZFLA 2FL6A 3KINA 4PJLA 5LT3A 2GM1A 2KINA 1MMGA 3LREA 1VFVA 5LT4A 4A14A 1SDMA 2X2RA 5LT1A 3DCBA 2UYIA 1F9TA 4ZCAA 4Y05A 3K5EA 1D1AA 3COBA 4PFOA 2VB6A 1II6A 1VFZA 1YRSA 3ZFDA 4ANJA 4A1ZA 1X88A 4FRZA 2ZFIA 4ETPA 2FL2A 1F9UA 3ZFCA 4A51A 3B6VA 3K3BA 1N6MA 4A50A 1BR4A 1BR1A 1T5CA 2X7DA 4LNUK 3GBJA 1D1BA 1VOMA 2XAEA 2ZFJA 2X7CA 4HNAK 3U06A 4ZHIA 1MMAA 4PJNA 1I6IA 1LVKA 1MMNA 2MYSA 3CJOA 4PJJA 4GKPA 2V26A 2IEHA 4DBRA 2XT3A 4GKRA 4A5YA 3WRDA 3T0QA 1G8XA 1KK7A 4PJMA 2GRYA 2ZFKA 1BR2A 5GSZA 2PG2A 5LT2A 1D0ZA 2O0AA 1V8KA 3CNZA 2FKYA 3WPNA 1MMDA 1RY6A 3KENA 4UBFA 3HQDA 2X51A 1VFXA 1D0YA 3L1CA 4BXNA 1MKJA 1LKXA 1V8JA 2Q2ZA 1CZ7A 3X2TA 4PK4A 4B7BA 4E7SA 4BN2A 3NWNA 2HEHA 4A28A 2Y5WA 2FMEA 2NCDA 4ETPB 2X7EA 3H4SA 3BFNA 3ZCWA 4AS7A 3DC4A 1FMVA 2VASA 1GOJA 1F9WA 1MNEA 1D1CA 2OWMA 4AP0A 3PXNA 4DBQA 2VVGA 5HLEA 1BG2A 1VFWA 3L9HA 1I5SA 1Q0BA 4BBGA 3B6UA 2ZFMA 2UYMA 1FMWA 3KARA 4E7ZA 2Q2YA 2Y65A 4GKQA 5LT0A 1F9VA 4PFPA 1D0XA 2G1QA
chains in the Genus database with same CATH topology
4H1GA 2WOGA 2ZFLA 2FL6A 3KINA 4PJLA 5LT3A 2GM1A 2KINA 1MMGA 3LREA 1VFVA 5LT4A 4A14A 1SDMA 2X2RA 5LT1A 3DCBA 2UYIA 1F9TA 4ZCAA 4Y05A 3K5EA 1D1AA 3COBA 4PFOA 2VB6A 1II6A 1VFZA 1YRSA 3ZFDA 4ANJA 4A1ZA 1X88A 4FRZA 2ZFIA 4ETPA 2FL2A 1F9UA 3ZFCA 4A51A 3B6VA 3K3BA 1N6MA 4A50A 1BR4A 1BR1A 1T5CA 2X7DA 4LNUK 3GBJA 1D1BA 1VOMA 2XAEA 2ZFJA 2X7CA 4HNAK 3U06A 4ZHIA 1MMAA 4PJNA 1I6IA 1LVKA 1MMNA 2MYSA 3CJOA 4PJJA 2V26A 2IEHA 4DBRA 2XT3A 4GKRA 4A5YA 3WRDA 3T0QA 1G8XA 1KK7A 4PJMA 2GRYA 2ZFKA 1BR2A 5GSZA 2PG2A 5LT2A 1D0ZA 1V8KA 3CNZA 2FKYA 3WPNA 1MMDA 1RY6A 3KENA 4UBFA 3HQDA 2X51A 1VFXA 1D0YA 3L1CA 4BXNA 1MKJA 1LKXA 1V8JA 2Q2ZA 1CZ7A 3X2TA 4PK4A 4B7BA 4E7SA 4BN2A 3NWNA 2HEHA 4A28A 2Y5WA 2FMEA 2NCDA 2X7EA 3H4SA 3BFNA 3ZCWA 4AS7A 3DC4A 1FMVA 2VASA 1GOJA 1F9WA 1MNEA 1D1CA 2OWMA 4AP0A 3PXNA 4DBQA 2VVGA 5HLEA 1BG2A 1VFWA 3L9HA 1I5SA 1Q0BA 4BBGA 3B6UA 2ZFMA 2UYMA 1FMWA 3KARA 4E7ZA 2Q2YA 2Y65A 5LT0A 1F9VA 4PFPA 1D0XA 2G1QA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4H1G A;  2WOG A;  2ZFL A;  2FL6 A;  3KIN A;  4PJL A;  5LT3 A;  2GM1 A;  2KIN A;  1MMG A;  3LRE A;  1VFV A;  5LT4 A;  4A14 A;  1SDM A;  2X2R A;  5LT1 A;  3DCB A;  2UYI A;  1F9T A;  4ZCA A;  4Y05 A;  3K5E A;  1D1A A;  3COB A;  4PFO A;  2VB6 A;  1II6 A;  1VFZ A;  1YRS A;  3ZFD A;  4ANJ A;  4A1Z A;  1X88 A;  4FRZ A;  2ZFI A;  4ETP A;  2FL2 A;  1F9U A;  3ZFC A;  4A51 A;  3B6V A;  3K3B A;  1N6M A;  4A50 A;  1BR4 A;  1BR1 A;  1T5C A;  2X7D A;  4LNU K;  3GBJ A;  1D1B A;  1VOM A;  2XAE A;  2ZFJ A;  2X7C A;  4HNA K;  3U06 A;  4ZHI A;  1MMA A;  4PJN A;  1I6I A;  1LVK A;  1MMN A;  2MYS A;  3CJO A;  4PJJ A;  2V26 A;  2IEH A;  4DBR A;  2XT3 A;  4GKR A;  4A5Y A;  3WRD A;  3T0Q A;  1G8X A;  1KK7 A;  4PJM A;  2GRY A;  2ZFK A;  1BR2 A;  5GSZ A;  2PG2 A;  5LT2 A;  1D0Z A;  1V8K A;  3CNZ A;  2FKY A;  3WPN A;  1MMD A;  1RY6 A;  3KEN A;  4UBF A;  3HQD A;  2X51 A;  1VFX A;  1D0Y A;  3L1C A;  4BXN A;  1MKJ A;  1LKX A;  1V8J A;  2Q2Z A;  1CZ7 A;  3X2T A;  4PK4 A;  4B7B A;  4E7S A;  4BN2 A;  3NWN A;  2HEH A;  4A28 A;  2Y5W A;  2FME A;  2NCD A;  2X7E A;  3H4S A;  3BFN A;  3ZCW A;  4AS7 A;  3DC4 A;  1FMV A;  2VAS A;  1GOJ A;  1F9W A;  1MNE A;  1D1C A;  2OWM A;  4AP0 A;  3PXN A;  4DBQ A;  2VVG A;  5HLE A;  1BG2 A;  1VFW A;  3L9H A;  1I5S A;  1Q0B A;  4BBG A;  3B6U A;  2ZFM A;  2UYM A;  1FMW A;  3KAR A;  4E7Z A;  2Q2Y A;  2Y65 A;  5LT0 A;  1F9V A;  4PFP A;  1D0X A;  2G1Q A; 
#chains in the Genus database with same CATH topology
 4H1G A;  2WOG A;  2ZFL A;  2FL6 A;  3KIN A;  4PJL A;  5LT3 A;  2GM1 A;  2KIN A;  1MMG A;  3LRE A;  1VFV A;  5LT4 A;  4A14 A;  1SDM A;  2X2R A;  5LT1 A;  3DCB A;  2UYI A;  1F9T A;  4ZCA A;  4Y05 A;  3K5E A;  1D1A A;  3COB A;  4PFO A;  2VB6 A;  1II6 A;  1VFZ A;  1YRS A;  3ZFD A;  4ANJ A;  4A1Z A;  1X88 A;  4FRZ A;  2ZFI A;  4ETP A;  2FL2 A;  1F9U A;  3ZFC A;  4A51 A;  3B6V A;  3K3B A;  1N6M A;  4A50 A;  1BR4 A;  1BR1 A;  1T5C A;  2X7D A;  4LNU K;  3GBJ A;  1D1B A;  1VOM A;  2XAE A;  2ZFJ A;  2X7C A;  4HNA K;  3U06 A;  4ZHI A;  1MMA A;  4PJN A;  1I6I A;  1LVK A;  1MMN A;  2MYS A;  3CJO A;  4PJJ A;  4GKP A;  2V26 A;  2IEH A;  4DBR A;  2XT3 A;  4GKR A;  4A5Y A;  3WRD A;  3T0Q A;  1G8X A;  1KK7 A;  4PJM A;  2GRY A;  2ZFK A;  1BR2 A;  5GSZ A;  2PG2 A;  5LT2 A;  1D0Z A;  2O0A A;  1V8K A;  3CNZ A;  2FKY A;  3WPN A;  1MMD A;  1RY6 A;  3KEN A;  4UBF A;  3HQD A;  2X51 A;  1VFX A;  1D0Y A;  3L1C A;  4BXN A;  1MKJ A;  1LKX A;  1V8J A;  2Q2Z A;  1CZ7 A;  3X2T A;  4PK4 A;  4B7B A;  4E7S A;  4BN2 A;  3NWN A;  2HEH A;  4A28 A;  2Y5W A;  2FME A;  2NCD A;  4ETP B;  2X7E A;  3H4S A;  3BFN A;  3ZCW A;  4AS7 A;  3DC4 A;  1FMV A;  2VAS A;  1GOJ A;  1F9W A;  1MNE A;  1D1C A;  2OWM A;  4AP0 A;  3PXN A;  4DBQ A;  2VVG A;  5HLE A;  1BG2 A;  1VFW A;  3L9H A;  1I5S A;  1Q0B A;  4BBG A;  3B6U A;  2ZFM A;  2UYM A;  1FMW A;  3KAR A;  4E7Z A;  2Q2Y A;  2Y65 A;  4GKQ A;  5LT0 A;  1F9V A;  4PFP A;  1D0X A;  2G1Q A; 
#chains in the Genus database with same CATH homology
 4H1G A;  2WOG A;  2ZFL A;  2FL6 A;  3KIN A;  4PJL A;  5LT3 A;  2GM1 A;  2KIN A;  1MMG A;  3LRE A;  1VFV A;  5LT4 A;  4A14 A;  1SDM A;  2X2R A;  5LT1 A;  3DCB A;  2UYI A;  1F9T A;  4ZCA A;  4Y05 A;  3K5E A;  1D1A A;  3COB A;  4PFO A;  2VB6 A;  1II6 A;  1VFZ A;  1YRS A;  3ZFD A;  4ANJ A;  4A1Z A;  1X88 A;  4FRZ A;  2ZFI A;  4ETP A;  2FL2 A;  1F9U A;  3ZFC A;  4A51 A;  3B6V A;  3K3B A;  1N6M A;  4A50 A;  1BR4 A;  1BR1 A;  1T5C A;  2X7D A;  4LNU K;  3GBJ A;  1D1B A;  1VOM A;  2XAE A;  2ZFJ A;  2X7C A;  4HNA K;  3U06 A;  4ZHI A;  1MMA A;  4PJN A;  1I6I A;  1LVK A;  1MMN A;  2MYS A;  3CJO A;  4PJJ A;  2V26 A;  2IEH A;  4DBR A;  2XT3 A;  4GKR A;  4A5Y A;  3WRD A;  3T0Q A;  1G8X A;  1KK7 A;  4PJM A;  2GRY A;  2ZFK A;  1BR2 A;  5GSZ A;  2PG2 A;  5LT2 A;  1D0Z A;  1V8K A;  3CNZ A;  2FKY A;  3WPN A;  1MMD A;  1RY6 A;  3KEN A;  4UBF A;  3HQD A;  2X51 A;  1VFX A;  1D0Y A;  3L1C A;  4BXN A;  1MKJ A;  1LKX A;  1V8J A;  2Q2Z A;  1CZ7 A;  3X2T A;  4PK4 A;  4B7B A;  4E7S A;  4BN2 A;  3NWN A;  2HEH A;  4A28 A;  2Y5W A;  2FME A;  2NCD A;  2X7E A;  3H4S A;  3BFN A;  3ZCW A;  4AS7 A;  3DC4 A;  1FMV A;  2VAS A;  1GOJ A;  1F9W A;  1MNE A;  1D1C A;  2OWM A;  4AP0 A;  3PXN A;  4DBQ A;  2VVG A;  5HLE A;  1BG2 A;  1VFW A;  3L9H A;  1I5S A;  1Q0B A;  4BBG A;  3B6U A;  2ZFM A;  2UYM A;  1FMW A;  3KAR A;  4E7Z A;  2Q2Y A;  2Y65 A;  5LT0 A;  1F9V A;  4PFP A;  1D0X A;  2G1Q A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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