3KARA

The motor domain of kinesin-like protein kar3, a saccharomyces cerevisiae kinesin-related protein
Total Genus 99

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
99
sequence length
338
structure length
323
Chain Sequence
GNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Contractile protein
source organism Saccharomyces cerevisiae
publication title X-ray crystal structure of the yeast Kar3 motor domain complexed with Mg.ADP to 2.3 A resolution.
pubmed doi rcsb
molecule keywords KINESIN-LIKE PROTEIN KAR3
total genus 99
structure length 323
sequence length 338
ec nomenclature
pdb deposition date 1997-11-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00225 Kinesin Kinesin motor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.850.10 Alpha Beta 3-Layer(aba) Sandwich Kinesin Kinesin motor domain 3karA00
1MMGA 1II6A 1V8KA 1I5SA 3KINA 2X7EA 3DCBA 2Q2ZA 4PJJA 3B6UA 1BR1A 1VFZA 2V26A 2G1QA 3LREA 2UYMA 4ZHIA 2X7DA 2ZFIA 4ZCAA 4DBQA 5LT1A 1Q0BA 2PG2A 4ETPA 5LT0A 1MKJA 2VB6A 1I6IA 2NCDA 4AP0A 1LKXA 4PJMA 2XT3A 3CNZA 4GKRA 2VASA 4UBFA 1D0XA 2ZFMA 1D1AA 2ZFKA 4PJNA 5HLEA 3K3BA 4A28A 3L9HA 1VOMA 4E7SA 2Y65A 3L1CA 4LNUK 2KINA 1F9TA 4A1ZA 1VFXA 3NWNA 5GSZA 3DC4A 3PXNA 3WRDA 1G8XA 4PK4A 4DBRA 2Q2YA 3ZFDA 2OWMA 1MMAA 3ZFCA 1D1BA 4A5YA 4A14A 1F9WA 1YRSA 1SDMA 1CZ7A 2ZFJA 1V8JA 4Y05A 1BG2A 2FMEA 4H1GA 3BFNA 1BR2A 2FL2A 3GBJA 1F9UA 3K5EA 4HNAK 2VVGA 2GM1A 4PFOA 2Y5WA 3WPNA 2X7CA 1FMWA 2X2RA 2IEHA 3KARA 4ANJA 3CJOA 3X2TA 2FL6A 3B6VA 2MYSA 1KK7A 2FKYA 1T5CA 1GOJA 4E7ZA 4AS7A 1MNEA 4PFPA 4BBGA 5LT3A 2X51A 4FRZA 3T0QA 4B7BA 3H4SA 5LT2A 4PJLA 2XAEA 4A51A 1D0YA 3U06A 3ZCWA 2UYIA 1VFWA 4A50A 1MMNA 4BXNA 1X88A 2HEHA 1N6MA 1D1CA 1VFVA 1RY6A 3HQDA 3KENA 5LT4A 1FMVA 1F9VA 2GRYA 1LVKA 4BN2A 2ZFLA 1MMDA 2WOGA 3COBA 1BR4A 1D0ZA
chains in the Genus database with same CATH superfamily
1MMGA 1II6A 1V8KA 1I5SA 3KINA 2X7EA 3DCBA 2Q2ZA 4PJJA 3B6UA 1BR1A 1VFZA 2V26A 2G1QA 3LREA 2UYMA 4ZHIA 2X7DA 2ZFIA 4ZCAA 4DBQA 5LT1A 1Q0BA 2PG2A 4ETPA 5LT0A 1MKJA 2VB6A 1I6IA 2NCDA 4AP0A 1LKXA 4PJMA 2XT3A 3CNZA 4GKRA 2VASA 4UBFA 1D0XA 2ZFMA 1D1AA 2ZFKA 4PJNA 5HLEA 3K3BA 4A28A 3L9HA 1VOMA 4E7SA 2Y65A 3L1CA 4LNUK 2KINA 1F9TA 4A1ZA 1VFXA 3NWNA 5GSZA 3DC4A 3PXNA 3WRDA 1G8XA 4PK4A 4DBRA 2Q2YA 3ZFDA 2OWMA 1MMAA 3ZFCA 1D1BA 4A5YA 4GKQA 4ETPB 4A14A 1F9WA 1YRSA 1SDMA 1CZ7A 2ZFJA 1V8JA 4Y05A 1BG2A 2FMEA 4H1GA 3BFNA 1BR2A 2FL2A 3GBJA 1F9UA 3K5EA 4HNAK 2VVGA 2GM1A 4PFOA 2Y5WA 4GKPA 3WPNA 2X7CA 1FMWA 2X2RA 2IEHA 3KARA 4ANJA 3CJOA 3X2TA 2O0AA 2FL6A 3B6VA 2MYSA 1KK7A 2FKYA 1T5CA 1GOJA 4E7ZA 4AS7A 1MNEA 4PFPA 4BBGA 5LT3A 2X51A 4FRZA 3T0QA 4B7BA 3H4SA 5LT2A 4PJLA 2XAEA 4A51A 1D0YA 3U06A 3ZCWA 2UYIA 1VFWA 4A50A 1MMNA 4BXNA 1X88A 2HEHA 1N6MA 1D1CA 1VFVA 1RY6A 3HQDA 3KENA 5LT4A 1FMVA 1F9VA 2GRYA 1LVKA 4BN2A 2ZFLA 1MMDA 2WOGA 3COBA 1BR4A 1D0ZA
chains in the Genus database with same CATH topology
1MMGA 1II6A 1V8KA 1I5SA 3KINA 2X7EA 3DCBA 2Q2ZA 4PJJA 3B6UA 1BR1A 1VFZA 2V26A 2G1QA 3LREA 2UYMA 4ZHIA 2X7DA 2ZFIA 4ZCAA 4DBQA 5LT1A 1Q0BA 2PG2A 4ETPA 5LT0A 1MKJA 2VB6A 1I6IA 2NCDA 4AP0A 1LKXA 4PJMA 2XT3A 3CNZA 4GKRA 2VASA 4UBFA 1D0XA 2ZFMA 1D1AA 2ZFKA 4PJNA 5HLEA 3K3BA 4A28A 3L9HA 1VOMA 4E7SA 2Y65A 3L1CA 4LNUK 2KINA 1F9TA 4A1ZA 1VFXA 3NWNA 5GSZA 3DC4A 3PXNA 3WRDA 1G8XA 4PK4A 4DBRA 2Q2YA 3ZFDA 2OWMA 1MMAA 3ZFCA 1D1BA 4A5YA 4A14A 1F9WA 1YRSA 1SDMA 1CZ7A 2ZFJA 1V8JA 4Y05A 1BG2A 2FMEA 4H1GA 3BFNA 1BR2A 2FL2A 3GBJA 1F9UA 3K5EA 4HNAK 2VVGA 2GM1A 4PFOA 2Y5WA 3WPNA 2X7CA 1FMWA 2X2RA 2IEHA 3KARA 4ANJA 3CJOA 3X2TA 2FL6A 3B6VA 2MYSA 1KK7A 2FKYA 1T5CA 1GOJA 4E7ZA 4AS7A 1MNEA 4PFPA 4BBGA 5LT3A 2X51A 4FRZA 3T0QA 4B7BA 3H4SA 5LT2A 4PJLA 2XAEA 4A51A 1D0YA 3U06A 3ZCWA 2UYIA 1VFWA 4A50A 1MMNA 4BXNA 1X88A 2HEHA 1N6MA 1D1CA 1VFVA 1RY6A 3HQDA 3KENA 5LT4A 1FMVA 1F9VA 2GRYA 1LVKA 4BN2A 2ZFLA 1MMDA 2WOGA 3COBA 1BR4A 1D0ZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MMG A;  1II6 A;  1V8K A;  1I5S A;  3KIN A;  2X7E A;  3DCB A;  2Q2Z A;  4PJJ A;  3B6U A;  1BR1 A;  1VFZ A;  2V26 A;  2G1Q A;  3LRE A;  2UYM A;  4ZHI A;  2X7D A;  2ZFI A;  4ZCA A;  4DBQ A;  5LT1 A;  1Q0B A;  2PG2 A;  4ETP A;  5LT0 A;  1MKJ A;  2VB6 A;  1I6I A;  2NCD A;  4AP0 A;  1LKX A;  4PJM A;  2XT3 A;  3CNZ A;  4GKR A;  2VAS A;  4UBF A;  1D0X A;  2ZFM A;  1D1A A;  2ZFK A;  4PJN A;  5HLE A;  3K3B A;  4A28 A;  3L9H A;  1VOM A;  4E7S A;  2Y65 A;  3L1C A;  4LNU K;  2KIN A;  1F9T A;  4A1Z A;  1VFX A;  3NWN A;  5GSZ A;  3DC4 A;  3PXN A;  3WRD A;  1G8X A;  4PK4 A;  4DBR A;  2Q2Y A;  3ZFD A;  2OWM A;  1MMA A;  3ZFC A;  1D1B A;  4A5Y A;  4A14 A;  1F9W A;  1YRS A;  1SDM A;  1CZ7 A;  2ZFJ A;  1V8J A;  4Y05 A;  1BG2 A;  2FME A;  4H1G A;  3BFN A;  1BR2 A;  2FL2 A;  3GBJ A;  1F9U A;  3K5E A;  4HNA K;  2VVG A;  2GM1 A;  4PFO A;  2Y5W A;  3WPN A;  2X7C A;  1FMW A;  2X2R A;  2IEH A;  3KAR A;  4ANJ A;  3CJO A;  3X2T A;  2FL6 A;  3B6V A;  2MYS A;  1KK7 A;  2FKY A;  1T5C A;  1GOJ A;  4E7Z A;  4AS7 A;  1MNE A;  4PFP A;  4BBG A;  5LT3 A;  2X51 A;  4FRZ A;  3T0Q A;  4B7B A;  3H4S A;  5LT2 A;  4PJL A;  2XAE A;  4A51 A;  1D0Y A;  3U06 A;  3ZCW A;  2UYI A;  1VFW A;  4A50 A;  1MMN A;  4BXN A;  1X88 A;  2HEH A;  1N6M A;  1D1C A;  1VFV A;  1RY6 A;  3HQD A;  3KEN A;  5LT4 A;  1FMV A;  1F9V A;  2GRY A;  1LVK A;  4BN2 A;  2ZFL A;  1MMD A;  2WOG A;  3COB A;  1BR4 A;  1D0Z A; 
#chains in the Genus database with same CATH topology
 1MMG A;  1II6 A;  1V8K A;  1I5S A;  3KIN A;  2X7E A;  3DCB A;  2Q2Z A;  4PJJ A;  3B6U A;  1BR1 A;  1VFZ A;  2V26 A;  2G1Q A;  3LRE A;  2UYM A;  4ZHI A;  2X7D A;  2ZFI A;  4ZCA A;  4DBQ A;  5LT1 A;  1Q0B A;  2PG2 A;  4ETP A;  5LT0 A;  1MKJ A;  2VB6 A;  1I6I A;  2NCD A;  4AP0 A;  1LKX A;  4PJM A;  2XT3 A;  3CNZ A;  4GKR A;  2VAS A;  4UBF A;  1D0X A;  2ZFM A;  1D1A A;  2ZFK A;  4PJN A;  5HLE A;  3K3B A;  4A28 A;  3L9H A;  1VOM A;  4E7S A;  2Y65 A;  3L1C A;  4LNU K;  2KIN A;  1F9T A;  4A1Z A;  1VFX A;  3NWN A;  5GSZ A;  3DC4 A;  3PXN A;  3WRD A;  1G8X A;  4PK4 A;  4DBR A;  2Q2Y A;  3ZFD A;  2OWM A;  1MMA A;  3ZFC A;  1D1B A;  4A5Y A;  4GKQ A;  4ETP B;  4A14 A;  1F9W A;  1YRS A;  1SDM A;  1CZ7 A;  2ZFJ A;  1V8J A;  4Y05 A;  1BG2 A;  2FME A;  4H1G A;  3BFN A;  1BR2 A;  2FL2 A;  3GBJ A;  1F9U A;  3K5E A;  4HNA K;  2VVG A;  2GM1 A;  4PFO A;  2Y5W A;  4GKP A;  3WPN A;  2X7C A;  1FMW A;  2X2R A;  2IEH A;  3KAR A;  4ANJ A;  3CJO A;  3X2T A;  2O0A A;  2FL6 A;  3B6V A;  2MYS A;  1KK7 A;  2FKY A;  1T5C A;  1GOJ A;  4E7Z A;  4AS7 A;  1MNE A;  4PFP A;  4BBG A;  5LT3 A;  2X51 A;  4FRZ A;  3T0Q A;  4B7B A;  3H4S A;  5LT2 A;  4PJL A;  2XAE A;  4A51 A;  1D0Y A;  3U06 A;  3ZCW A;  2UYI A;  1VFW A;  4A50 A;  1MMN A;  4BXN A;  1X88 A;  2HEH A;  1N6M A;  1D1C A;  1VFV A;  1RY6 A;  3HQD A;  3KEN A;  5LT4 A;  1FMV A;  1F9V A;  2GRY A;  1LVK A;  4BN2 A;  2ZFL A;  1MMD A;  2WOG A;  3COB A;  1BR4 A;  1D0Z A; 
#chains in the Genus database with same CATH homology
 1MMG A;  1II6 A;  1V8K A;  1I5S A;  3KIN A;  2X7E A;  3DCB A;  2Q2Z A;  4PJJ A;  3B6U A;  1BR1 A;  1VFZ A;  2V26 A;  2G1Q A;  3LRE A;  2UYM A;  4ZHI A;  2X7D A;  2ZFI A;  4ZCA A;  4DBQ A;  5LT1 A;  1Q0B A;  2PG2 A;  4ETP A;  5LT0 A;  1MKJ A;  2VB6 A;  1I6I A;  2NCD A;  4AP0 A;  1LKX A;  4PJM A;  2XT3 A;  3CNZ A;  4GKR A;  2VAS A;  4UBF A;  1D0X A;  2ZFM A;  1D1A A;  2ZFK A;  4PJN A;  5HLE A;  3K3B A;  4A28 A;  3L9H A;  1VOM A;  4E7S A;  2Y65 A;  3L1C A;  4LNU K;  2KIN A;  1F9T A;  4A1Z A;  1VFX A;  3NWN A;  5GSZ A;  3DC4 A;  3PXN A;  3WRD A;  1G8X A;  4PK4 A;  4DBR A;  2Q2Y A;  3ZFD A;  2OWM A;  1MMA A;  3ZFC A;  1D1B A;  4A5Y A;  4A14 A;  1F9W A;  1YRS A;  1SDM A;  1CZ7 A;  2ZFJ A;  1V8J A;  4Y05 A;  1BG2 A;  2FME A;  4H1G A;  3BFN A;  1BR2 A;  2FL2 A;  3GBJ A;  1F9U A;  3K5E A;  4HNA K;  2VVG A;  2GM1 A;  4PFO A;  2Y5W A;  3WPN A;  2X7C A;  1FMW A;  2X2R A;  2IEH A;  3KAR A;  4ANJ A;  3CJO A;  3X2T A;  2FL6 A;  3B6V A;  2MYS A;  1KK7 A;  2FKY A;  1T5C A;  1GOJ A;  4E7Z A;  4AS7 A;  1MNE A;  4PFP A;  4BBG A;  5LT3 A;  2X51 A;  4FRZ A;  3T0Q A;  4B7B A;  3H4S A;  5LT2 A;  4PJL A;  2XAE A;  4A51 A;  1D0Y A;  3U06 A;  3ZCW A;  2UYI A;  1VFW A;  4A50 A;  1MMN A;  4BXN A;  1X88 A;  2HEH A;  1N6M A;  1D1C A;  1VFV A;  1RY6 A;  3HQD A;  3KEN A;  5LT4 A;  1FMV A;  1F9V A;  2GRY A;  1LVK A;  4BN2 A;  2ZFL A;  1MMD A;  2WOG A;  3COB A;  1BR4 A;  1D0Z A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.