3LREA

Crystal structure analysis of human kinesin-8 motor domain
Total Genus 94

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
94
sequence length
342
structure length
289
Chain Sequence
MKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDNKDLKFVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRDLLVNSGPLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHATSSRSHAVFQIYLRQQDKTASINQNVRIAKMSLIDLAGSERNRSLLALGNVINALAIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI2 (81-84)S1 (13-18)AH1 (23-28)TIV1 (45-71)TI1 (38-41)S2 (34-38)AH7 (283-296)S3 (41-44)AH2 (86-92)TII1 (114-117)AH6 (200-213)S4 (72-75)S5 (78-80)TIV3 (216-224)S12 (187-190)AH3 (94-103)S10 (166-169)S6 (107-112)S9 (151-163)AH5 (132-147)S7 (125-126)TII2 (189-192)TI3 (126-129)S11 (178-181)S8 (129-130)TI10 (244-247)S14 (252-258)TI7 (182-185)TI9 (240-243)TVIII1 (76-79)AH4 (119-124)TI8 (225-228)TI4 (147-150)TIV2 (162-165)S13 (229-240)TI6 (169-172)Updating...
connected with : NaN
molecule tags Motor protein
source organism Homo sapiens
publication title Insight into the molecular mechanism of the multitasking kinesin-8 motor.
pubmed doi rcsb
molecule keywords Kinesin-like protein KIF18A
total genus 94
structure length 289
sequence length 342
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-02-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00225 Kinesin Kinesin motor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.850.10 Alpha Beta 3-Layer(aba) Sandwich Kinesin Kinesin motor domain 3lreA00
1BR4A 1I6IA 3L9HA 3X2TA 1YRSA 3ZCWA 3KARA 4Y05A 2ZFKA 1MMDA 3BFNA 3H4SA 1F9TA 1KK7A 3DCBA 4A51A 1CZ7A 1GOJA 2KINA 2MYSA 2Y5WA 2X7CA 4E7ZA 4PJJA 1VFXA 1D0ZA 2OWMA 2VVGA 3KENA 4DBRA 1N6MA 3K5EA 1VFWA 2VB6A 2X2RA 1LKXA 2GM1A 3ZFCA 4PJMA 3ZFDA 2UYIA 3GBJA 4AP0A 4GKRA 1RY6A 3WPNA 4AS7A 1F9VA 1MMNA 3KINA 1I5SA 4A50A 1II6A 1D0YA 1VOMA 4BN2A 1D1AA 3WRDA 2ZFIA 4HNAK 4PJNA 1D0XA 3U06A 1VFVA 4PJLA 2ZFLA 1D1BA 1FMWA 4BBGA 1FMVA 1V8JA 5HLEA 3NWNA 1Q0BA 1BR2A 1F9WA 2VASA 5LT1A 2Y65A 3B6VA 5GSZA 2V26A 3COBA 2Q2YA 4LNUK 4PFOA 4ZHIA 2ZFJA 1X88A 1D1CA 2HEHA 4E7SA 4ETPA 3CNZA 1BG2A 4ZCAA 1VFZA 2FKYA 4B7BA 1BR1A 3CJOA 4A1ZA 2G1QA 2FMEA 2GRYA 2X7DA 2FL6A 4ANJA 2XAEA 1MKJA 4PFPA 4FRZA 5LT3A 3HQDA 1MNEA 5LT4A 1F9UA 3K3BA 3DC4A 5LT0A 1MMGA 2UYMA 3T0QA 5LT2A 4A14A 2X7EA 4PK4A 4H1GA 2PG2A 2X51A 1V8KA 2XT3A 2FL2A 4UBFA 2Q2ZA 1T5CA 4A5YA 4DBQA 2WOGA 1MMAA 4A28A 1G8XA 2IEHA 3L1CA 4BXNA 1LVKA 2ZFMA 3PXNA 2NCDA 1SDMA 3B6UA 3LREA
chains in the Genus database with same CATH superfamily
1BR4A 1I6IA 3L9HA 3X2TA 1YRSA 3ZCWA 3KARA 4Y05A 2ZFKA 1MMDA 3BFNA 3H4SA 1F9TA 1KK7A 3DCBA 4A51A 1CZ7A 1GOJA 2KINA 2MYSA 2Y5WA 2X7CA 4GKPA 4E7ZA 4PJJA 1VFXA 1D0ZA 2OWMA 2VVGA 3KENA 4DBRA 1N6MA 3K5EA 4ETPB 1VFWA 2VB6A 2X2RA 1LKXA 2GM1A 3ZFCA 4PJMA 3ZFDA 2UYIA 3GBJA 4AP0A 4GKRA 1RY6A 3WPNA 4AS7A 1F9VA 1MMNA 3KINA 1I5SA 4A50A 1II6A 1D0YA 1VOMA 4BN2A 1D1AA 3WRDA 2ZFIA 4HNAK 4PJNA 1D0XA 3U06A 1VFVA 4PJLA 2ZFLA 1D1BA 1FMWA 4BBGA 1FMVA 1V8JA 5HLEA 3NWNA 1Q0BA 1BR2A 1F9WA 2VASA 5LT1A 2Y65A 3B6VA 5GSZA 2V26A 3COBA 2Q2YA 4LNUK 4PFOA 4ZHIA 2ZFJA 1X88A 1D1CA 2HEHA 4E7SA 4ETPA 3CNZA 1BG2A 4ZCAA 1VFZA 2FKYA 4B7BA 1BR1A 3CJOA 4A1ZA 2G1QA 2FMEA 2GRYA 2X7DA 2FL6A 4ANJA 2XAEA 1MKJA 4PFPA 2O0AA 4GKQA 4FRZA 5LT3A 3HQDA 1MNEA 5LT4A 1F9UA 3K3BA 3DC4A 5LT0A 1MMGA 2UYMA 3T0QA 5LT2A 4A14A 2X7EA 4PK4A 4H1GA 2PG2A 2X51A 1V8KA 2XT3A 2FL2A 4UBFA 2Q2ZA 1T5CA 4A5YA 4DBQA 2WOGA 1MMAA 4A28A 1G8XA 2IEHA 3L1CA 4BXNA 1LVKA 2ZFMA 3PXNA 2NCDA 1SDMA 3B6UA 3LREA
chains in the Genus database with same CATH topology
1BR4A 1I6IA 3L9HA 3X2TA 1YRSA 3ZCWA 3KARA 4Y05A 2ZFKA 1MMDA 3BFNA 3H4SA 1F9TA 1KK7A 3DCBA 4A51A 1CZ7A 1GOJA 2KINA 2MYSA 2Y5WA 2X7CA 4E7ZA 4PJJA 1VFXA 1D0ZA 2OWMA 2VVGA 3KENA 4DBRA 1N6MA 3K5EA 1VFWA 2VB6A 2X2RA 1LKXA 2GM1A 3ZFCA 4PJMA 3ZFDA 2UYIA 3GBJA 4AP0A 4GKRA 1RY6A 3WPNA 4AS7A 1F9VA 1MMNA 3KINA 1I5SA 4A50A 1II6A 1D0YA 1VOMA 4BN2A 1D1AA 3WRDA 2ZFIA 4HNAK 4PJNA 1D0XA 3U06A 1VFVA 4PJLA 2ZFLA 1D1BA 1FMWA 4BBGA 1FMVA 1V8JA 5HLEA 3NWNA 1Q0BA 1BR2A 1F9WA 2VASA 5LT1A 2Y65A 3B6VA 5GSZA 2V26A 3COBA 2Q2YA 4LNUK 4PFOA 4ZHIA 2ZFJA 1X88A 1D1CA 2HEHA 4E7SA 4ETPA 3CNZA 1BG2A 4ZCAA 1VFZA 2FKYA 4B7BA 1BR1A 3CJOA 4A1ZA 2G1QA 2FMEA 2GRYA 2X7DA 2FL6A 4ANJA 2XAEA 1MKJA 4PFPA 4FRZA 5LT3A 3HQDA 1MNEA 5LT4A 1F9UA 3K3BA 3DC4A 5LT0A 1MMGA 2UYMA 3T0QA 5LT2A 4A14A 2X7EA 4PK4A 4H1GA 2PG2A 2X51A 1V8KA 2XT3A 2FL2A 4UBFA 2Q2ZA 1T5CA 4A5YA 4DBQA 2WOGA 1MMAA 4A28A 1G8XA 2IEHA 3L1CA 4BXNA 1LVKA 2ZFMA 3PXNA 2NCDA 1SDMA 3B6UA 3LREA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BR4 A;  1I6I A;  3L9H A;  3X2T A;  1YRS A;  3ZCW A;  3KAR A;  4Y05 A;  2ZFK A;  1MMD A;  3BFN A;  3H4S A;  1F9T A;  1KK7 A;  3DCB A;  4A51 A;  1CZ7 A;  1GOJ A;  2KIN A;  2MYS A;  2Y5W A;  2X7C A;  4E7Z A;  4PJJ A;  1VFX A;  1D0Z A;  2OWM A;  2VVG A;  3KEN A;  4DBR A;  1N6M A;  3K5E A;  1VFW A;  2VB6 A;  2X2R A;  1LKX A;  2GM1 A;  3ZFC A;  4PJM A;  3ZFD A;  2UYI A;  3GBJ A;  4AP0 A;  4GKR A;  1RY6 A;  3WPN A;  4AS7 A;  1F9V A;  1MMN A;  3KIN A;  1I5S A;  4A50 A;  1II6 A;  1D0Y A;  1VOM A;  4BN2 A;  1D1A A;  3WRD A;  2ZFI A;  4HNA K;  4PJN A;  1D0X A;  3U06 A;  1VFV A;  4PJL A;  2ZFL A;  1D1B A;  1FMW A;  4BBG A;  1FMV A;  1V8J A;  5HLE A;  3NWN A;  1Q0B A;  1BR2 A;  1F9W A;  2VAS A;  5LT1 A;  2Y65 A;  3B6V A;  5GSZ A;  2V26 A;  3COB A;  2Q2Y A;  4LNU K;  4PFO A;  4ZHI A;  2ZFJ A;  1X88 A;  1D1C A;  2HEH A;  4E7S A;  4ETP A;  3CNZ A;  1BG2 A;  4ZCA A;  1VFZ A;  2FKY A;  4B7B A;  1BR1 A;  3CJO A;  4A1Z A;  2G1Q A;  2FME A;  2GRY A;  2X7D A;  2FL6 A;  4ANJ A;  2XAE A;  1MKJ A;  4PFP A;  4FRZ A;  5LT3 A;  3HQD A;  1MNE A;  5LT4 A;  1F9U A;  3K3B A;  3DC4 A;  5LT0 A;  1MMG A;  2UYM A;  3T0Q A;  5LT2 A;  4A14 A;  2X7E A;  4PK4 A;  4H1G A;  2PG2 A;  2X51 A;  1V8K A;  2XT3 A;  2FL2 A;  4UBF A;  2Q2Z A;  1T5C A;  4A5Y A;  4DBQ A;  2WOG A;  1MMA A;  4A28 A;  1G8X A;  2IEH A;  3L1C A;  4BXN A;  1LVK A;  2ZFM A;  3PXN A;  2NCD A;  1SDM A;  3B6U A;  3LRE A; 
#chains in the Genus database with same CATH topology
 1BR4 A;  1I6I A;  3L9H A;  3X2T A;  1YRS A;  3ZCW A;  3KAR A;  4Y05 A;  2ZFK A;  1MMD A;  3BFN A;  3H4S A;  1F9T A;  1KK7 A;  3DCB A;  4A51 A;  1CZ7 A;  1GOJ A;  2KIN A;  2MYS A;  2Y5W A;  2X7C A;  4GKP A;  4E7Z A;  4PJJ A;  1VFX A;  1D0Z A;  2OWM A;  2VVG A;  3KEN A;  4DBR A;  1N6M A;  3K5E A;  4ETP B;  1VFW A;  2VB6 A;  2X2R A;  1LKX A;  2GM1 A;  3ZFC A;  4PJM A;  3ZFD A;  2UYI A;  3GBJ A;  4AP0 A;  4GKR A;  1RY6 A;  3WPN A;  4AS7 A;  1F9V A;  1MMN A;  3KIN A;  1I5S A;  4A50 A;  1II6 A;  1D0Y A;  1VOM A;  4BN2 A;  1D1A A;  3WRD A;  2ZFI A;  4HNA K;  4PJN A;  1D0X A;  3U06 A;  1VFV A;  4PJL A;  2ZFL A;  1D1B A;  1FMW A;  4BBG A;  1FMV A;  1V8J A;  5HLE A;  3NWN A;  1Q0B A;  1BR2 A;  1F9W A;  2VAS A;  5LT1 A;  2Y65 A;  3B6V A;  5GSZ A;  2V26 A;  3COB A;  2Q2Y A;  4LNU K;  4PFO A;  4ZHI A;  2ZFJ A;  1X88 A;  1D1C A;  2HEH A;  4E7S A;  4ETP A;  3CNZ A;  1BG2 A;  4ZCA A;  1VFZ A;  2FKY A;  4B7B A;  1BR1 A;  3CJO A;  4A1Z A;  2G1Q A;  2FME A;  2GRY A;  2X7D A;  2FL6 A;  4ANJ A;  2XAE A;  1MKJ A;  4PFP A;  2O0A A;  4GKQ A;  4FRZ A;  5LT3 A;  3HQD A;  1MNE A;  5LT4 A;  1F9U A;  3K3B A;  3DC4 A;  5LT0 A;  1MMG A;  2UYM A;  3T0Q A;  5LT2 A;  4A14 A;  2X7E A;  4PK4 A;  4H1G A;  2PG2 A;  2X51 A;  1V8K A;  2XT3 A;  2FL2 A;  4UBF A;  2Q2Z A;  1T5C A;  4A5Y A;  4DBQ A;  2WOG A;  1MMA A;  4A28 A;  1G8X A;  2IEH A;  3L1C A;  4BXN A;  1LVK A;  2ZFM A;  3PXN A;  2NCD A;  1SDM A;  3B6U A;  3LRE A; 
#chains in the Genus database with same CATH homology
 1BR4 A;  1I6I A;  3L9H A;  3X2T A;  1YRS A;  3ZCW A;  3KAR A;  4Y05 A;  2ZFK A;  1MMD A;  3BFN A;  3H4S A;  1F9T A;  1KK7 A;  3DCB A;  4A51 A;  1CZ7 A;  1GOJ A;  2KIN A;  2MYS A;  2Y5W A;  2X7C A;  4E7Z A;  4PJJ A;  1VFX A;  1D0Z A;  2OWM A;  2VVG A;  3KEN A;  4DBR A;  1N6M A;  3K5E A;  1VFW A;  2VB6 A;  2X2R A;  1LKX A;  2GM1 A;  3ZFC A;  4PJM A;  3ZFD A;  2UYI A;  3GBJ A;  4AP0 A;  4GKR A;  1RY6 A;  3WPN A;  4AS7 A;  1F9V A;  1MMN A;  3KIN A;  1I5S A;  4A50 A;  1II6 A;  1D0Y A;  1VOM A;  4BN2 A;  1D1A A;  3WRD A;  2ZFI A;  4HNA K;  4PJN A;  1D0X A;  3U06 A;  1VFV A;  4PJL A;  2ZFL A;  1D1B A;  1FMW A;  4BBG A;  1FMV A;  1V8J A;  5HLE A;  3NWN A;  1Q0B A;  1BR2 A;  1F9W A;  2VAS A;  5LT1 A;  2Y65 A;  3B6V A;  5GSZ A;  2V26 A;  3COB A;  2Q2Y A;  4LNU K;  4PFO A;  4ZHI A;  2ZFJ A;  1X88 A;  1D1C A;  2HEH A;  4E7S A;  4ETP A;  3CNZ A;  1BG2 A;  4ZCA A;  1VFZ A;  2FKY A;  4B7B A;  1BR1 A;  3CJO A;  4A1Z A;  2G1Q A;  2FME A;  2GRY A;  2X7D A;  2FL6 A;  4ANJ A;  2XAE A;  1MKJ A;  4PFP A;  4FRZ A;  5LT3 A;  3HQD A;  1MNE A;  5LT4 A;  1F9U A;  3K3B A;  3DC4 A;  5LT0 A;  1MMG A;  2UYM A;  3T0Q A;  5LT2 A;  4A14 A;  2X7E A;  4PK4 A;  4H1G A;  2PG2 A;  2X51 A;  1V8K A;  2XT3 A;  2FL2 A;  4UBF A;  2Q2Z A;  1T5C A;  4A5Y A;  4DBQ A;  2WOG A;  1MMA A;  4A28 A;  1G8X A;  2IEH A;  3L1C A;  4BXN A;  1LVK A;  2ZFM A;  3PXN A;  2NCD A;  1SDM A;  3B6U A;  3LRE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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