3PXN | Genus

Total Genus 89

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	89
sequence length	321
structure length	291
Chain Sequence	AKLSAVRIAVREAPYRPSVVQFPPWSDGKSLIVDQNEFHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPHMPMVAARCQRCTCLPLHSQADLHHILELGTRNRRSRSHAIVTIHVKSKTHHSRMNIVDLAGSEGVVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKKLRLEH

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Motor protein
source organism	Drosophila melanogaster
publication title	A metal switch for controlling the activity of molecular motor proteins. pubmed doi rcsb
molecule keywords	Kinesin-like protein Nod
total genus	89
structure length	291
sequence length	321
ec nomenclature
pdb deposition date	2010-12-10

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00225	Kinesin	Kinesin motor domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.40.850.10	Alpha Beta	3-Layer(aba) Sandwich	Kinesin	Kinesin motor domain	3pxnA00

1BR2A 1Q0BA 4HNAK 1YRSA 3H4SA 4BXNA 1BG2A 2Q2ZA 2UYMA 1BR4A 4PJLA 2ZFKA 1D0YA 2KINA 1MMAA 4BBGA 2FKYA 4FRZA 3L9HA 1D0XA 4A1ZA 5LT0A 4A28A 3GBJA 4H1GA 2XAEA 1D1BA 4GKRA 1VFXA 4AS7A 2X7CA 1F9VA 1GOJA 2GRYA 1D1CA 2WOGA 1F9UA 1II6A 3PXNA 3HQDA 4E7SA 1F9TA 3KINA 1CZ7A 1VFZA 4Y05A 3U06A 2MYSA 4PFPA 2VVGA 2FMEA 1KK7A 1VFWA 4E7ZA 3L1CA 1LKXA 1MKJA 1VFVA 4BN2A 4A14A 4A50A 5LT3A 2X7EA 2ZFIA 1SDMA 4ZCAA 2Y65A 4ETPA 1T5CA 4PJMA 4PJJA 3WPNA 4AP0A 1D0ZA 2V26A 2NCDA 3DCBA 5LT1A 1D1AA 1V8KA 2Q2YA 3KENA 4DBQA 3ZCWA 2FL6A 3K3BA 5GSZA 2G1QA 5LT2A 2VB6A 4ZHIA 2HEHA 3KARA 2ZFLA 1X88A 1MMNA 2OWMA 1I6IA 2ZFJA 2VASA 1I5SA 1BR1A 1G8XA 4B7BA 1F9WA 3CNZA 3ZFDA 1VOMA 3COBA 2X51A 2XT3A 3K5EA 2IEHA 5HLEA 3NWNA 1RY6A 1V8JA 3BFNA 3CJOA 4ANJA 4UBFA 4PFOA 2ZFMA 3B6VA 4A51A 1LVKA 1MMGA 2GM1A 2PG2A 2FL2A 2Y5WA 3B6UA 4DBRA 4A5YA 2X7DA 1MNEA 1MMDA 1N6MA 1FMWA 4PK4A 3DC4A 1FMVA 3WRDA 2UYIA 4PJNA 3T0QA 2X2RA 3LREA 3ZFCA 5LT4A 4LNUK 3X2TA
chains in the Genus database with same CATH superfamily

1BR2A 1Q0BA 4HNAK 1YRSA 3H4SA 4BXNA 1BG2A 2Q2ZA 2UYMA 1BR4A 4PJLA 2ZFKA 1D0YA 2KINA 1MMAA 4BBGA 2FKYA 4FRZA 3L9HA 1D0XA 4A1ZA 5LT0A 4A28A 4GKQA 3GBJA 4H1GA 2XAEA 1D1BA 4GKRA 1VFXA 4AS7A 2X7CA 1F9VA 1GOJA 2GRYA 1D1CA 2WOGA 1F9UA 1II6A 3PXNA 3HQDA 4E7SA 1F9TA 3KINA 1CZ7A 1VFZA 4Y05A 3U06A 2MYSA 4PFPA 2VVGA 2FMEA 1KK7A 1VFWA 4E7ZA 3L1CA 1LKXA 1MKJA 1VFVA 4BN2A 4A14A 4A50A 5LT3A 2X7EA 2ZFIA 1SDMA 4ZCAA 2Y65A 4ETPA 1T5CA 4PJMA 4PJJA 3WPNA 4AP0A 1D0ZA 2V26A 2NCDA 3DCBA 5LT1A 1D1AA 1V8KA 2Q2YA 3KENA 4DBQA 3ZCWA 2FL6A 3K3BA 5GSZA 2G1QA 5LT2A 2VB6A 4ETPB 4ZHIA 2HEHA 3KARA 2ZFLA 1X88A 1MMNA 2OWMA 1I6IA 2ZFJA 2VASA 1I5SA 1BR1A 1G8XA 4B7BA 1F9WA 4GKPA 3CNZA 3ZFDA 1VOMA 3COBA 2X51A 2XT3A 3K5EA 2IEHA 5HLEA 3NWNA 1RY6A 1V8JA 3BFNA 3CJOA 4ANJA 4UBFA 4PFOA 2ZFMA 3B6VA 4A51A 1LVKA 1MMGA 2GM1A 2PG2A 2FL2A 2Y5WA 3B6UA 4DBRA 4A5YA 2X7DA 1MNEA 1MMDA 1N6MA 1FMWA 4PK4A 3DC4A 1FMVA 2O0AA 3WRDA 2UYIA 4PJNA 3T0QA 2X2RA 3LREA 3ZFCA 5LT4A 4LNUK 3X2TA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1BR2 A;  1Q0B A;  4HNA K;  1YRS A;  3H4S A;  4BXN A;  1BG2 A;  2Q2Z A;  2UYM A;  1BR4 A;  4PJL A;  2ZFK A;  1D0Y A;  2KIN A;  1MMA A;  4BBG A;  2FKY A;  4FRZ A;  3L9H A;  1D0X A;  4A1Z A;  5LT0 A;  4A28 A;  3GBJ A;  4H1G A;  2XAE A;  1D1B A;  4GKR A;  1VFX A;  4AS7 A;  2X7C A;  1F9V A;  1GOJ A;  2GRY A;  1D1C A;  2WOG A;  1F9U A;  1II6 A;  3PXN A;  3HQD A;  4E7S A;  1F9T A;  3KIN A;  1CZ7 A;  1VFZ A;  4Y05 A;  3U06 A;  2MYS A;  4PFP A;  2VVG A;  2FME A;  1KK7 A;  1VFW A;  4E7Z A;  3L1C A;  1LKX A;  1MKJ A;  1VFV A;  4BN2 A;  4A14 A;  4A50 A;  5LT3 A;  2X7E A;  2ZFI A;  1SDM A;  4ZCA A;  2Y65 A;  4ETP A;  1T5C A;  4PJM A;  4PJJ A;  3WPN A;  4AP0 A;  1D0Z A;  2V26 A;  2NCD A;  3DCB A;  5LT1 A;  1D1A A;  1V8K A;  2Q2Y A;  3KEN A;  4DBQ A;  3ZCW A;  2FL6 A;  3K3B A;  5GSZ A;  2G1Q A;  5LT2 A;  2VB6 A;  4ZHI A;  2HEH A;  3KAR A;  2ZFL A;  1X88 A;  1MMN A;  2OWM A;  1I6I A;  2ZFJ A;  2VAS A;  1I5S A;  1BR1 A;  1G8X A;  4B7B A;  1F9W A;  3CNZ A;  3ZFD A;  1VOM A;  3COB A;  2X51 A;  2XT3 A;  3K5E A;  2IEH A;  5HLE A;  3NWN A;  1RY6 A;  1V8J A;  3BFN A;  3CJO A;  4ANJ A;  4UBF A;  4PFO A;  2ZFM A;  3B6V A;  4A51 A;  1LVK A;  1MMG A;  2GM1 A;  2PG2 A;  2FL2 A;  2Y5W A;  3B6U A;  4DBR A;  4A5Y A;  2X7D A;  1MNE A;  1MMD A;  1N6M A;  1FMW A;  4PK4 A;  3DC4 A;  1FMV A;  3WRD A;  2UYI A;  4PJN A;  3T0Q A;  2X2R A;  3LRE A;  3ZFC A;  5LT4 A;  4LNU K;  3X2T A; 
#chains in the Genus database with same CATH topology
 1BR2 A;  1Q0B A;  4HNA K;  1YRS A;  3H4S A;  4BXN A;  1BG2 A;  2Q2Z A;  2UYM A;  1BR4 A;  4PJL A;  2ZFK A;  1D0Y A;  2KIN A;  1MMA A;  4BBG A;  2FKY A;  4FRZ A;  3L9H A;  1D0X A;  4A1Z A;  5LT0 A;  4A28 A;  4GKQ A;  3GBJ A;  4H1G A;  2XAE A;  1D1B A;  4GKR A;  1VFX A;  4AS7 A;  2X7C A;  1F9V A;  1GOJ A;  2GRY A;  1D1C A;  2WOG A;  1F9U A;  1II6 A;  3PXN A;  3HQD A;  4E7S A;  1F9T A;  3KIN A;  1CZ7 A;  1VFZ A;  4Y05 A;  3U06 A;  2MYS A;  4PFP A;  2VVG A;  2FME A;  1KK7 A;  1VFW A;  4E7Z A;  3L1C A;  1LKX A;  1MKJ A;  1VFV A;  4BN2 A;  4A14 A;  4A50 A;  5LT3 A;  2X7E A;  2ZFI A;  1SDM A;  4ZCA A;  2Y65 A;  4ETP A;  1T5C A;  4PJM A;  4PJJ A;  3WPN A;  4AP0 A;  1D0Z A;  2V26 A;  2NCD A;  3DCB A;  5LT1 A;  1D1A A;  1V8K A;  2Q2Y A;  3KEN A;  4DBQ A;  3ZCW A;  2FL6 A;  3K3B A;  5GSZ A;  2G1Q A;  5LT2 A;  2VB6 A;  4ETP B;  4ZHI A;  2HEH A;  3KAR A;  2ZFL A;  1X88 A;  1MMN A;  2OWM A;  1I6I A;  2ZFJ A;  2VAS A;  1I5S A;  1BR1 A;  1G8X A;  4B7B A;  1F9W A;  4GKP A;  3CNZ A;  3ZFD A;  1VOM A;  3COB A;  2X51 A;  2XT3 A;  3K5E A;  2IEH A;  5HLE A;  3NWN A;  1RY6 A;  1V8J A;  3BFN A;  3CJO A;  4ANJ A;  4UBF A;  4PFO A;  2ZFM A;  3B6V A;  4A51 A;  1LVK A;  1MMG A;  2GM1 A;  2PG2 A;  2FL2 A;  2Y5W A;  3B6U A;  4DBR A;  4A5Y A;  2X7D A;  1MNE A;  1MMD A;  1N6M A;  1FMW A;  4PK4 A;  3DC4 A;  1FMV A;  2O0A A;  3WRD A;  2UYI A;  4PJN A;  3T0Q A;  2X2R A;  3LRE A;  3ZFC A;  5LT4 A;  4LNU K;  3X2T A; 
#chains in the Genus database with same CATH homology
 1BR2 A;  1Q0B A;  4HNA K;  1YRS A;  3H4S A;  4BXN A;  1BG2 A;  2Q2Z A;  2UYM A;  1BR4 A;  4PJL A;  2ZFK A;  1D0Y A;  2KIN A;  1MMA A;  4BBG A;  2FKY A;  4FRZ A;  3L9H A;  1D0X A;  4A1Z A;  5LT0 A;  4A28 A;  3GBJ A;  4H1G A;  2XAE A;  1D1B A;  4GKR A;  1VFX A;  4AS7 A;  2X7C A;  1F9V A;  1GOJ A;  2GRY A;  1D1C A;  2WOG A;  1F9U A;  1II6 A;  3PXN A;  3HQD A;  4E7S A;  1F9T A;  3KIN A;  1CZ7 A;  1VFZ A;  4Y05 A;  3U06 A;  2MYS A;  4PFP A;  2VVG A;  2FME A;  1KK7 A;  1VFW A;  4E7Z A;  3L1C A;  1LKX A;  1MKJ A;  1VFV A;  4BN2 A;  4A14 A;  4A50 A;  5LT3 A;  2X7E A;  2ZFI A;  1SDM A;  4ZCA A;  2Y65 A;  4ETP A;  1T5C A;  4PJM A;  4PJJ A;  3WPN A;  4AP0 A;  1D0Z A;  2V26 A;  2NCD A;  3DCB A;  5LT1 A;  1D1A A;  1V8K A;  2Q2Y A;  3KEN A;  4DBQ A;  3ZCW A;  2FL6 A;  3K3B A;  5GSZ A;  2G1Q A;  5LT2 A;  2VB6 A;  4ZHI A;  2HEH A;  3KAR A;  2ZFL A;  1X88 A;  1MMN A;  2OWM A;  1I6I A;  2ZFJ A;  2VAS A;  1I5S A;  1BR1 A;  1G8X A;  4B7B A;  1F9W A;  3CNZ A;  3ZFD A;  1VOM A;  3COB A;  2X51 A;  2XT3 A;  3K5E A;  2IEH A;  5HLE A;  3NWN A;  1RY6 A;  1V8J A;  3BFN A;  3CJO A;  4ANJ A;  4UBF A;  4PFO A;  2ZFM A;  3B6V A;  4A51 A;  1LVK A;  1MMG A;  2GM1 A;  2PG2 A;  2FL2 A;  2Y5W A;  3B6U A;  4DBR A;  4A5Y A;  2X7D A;  1MNE A;  1MMD A;  1N6M A;  1FMW A;  4PK4 A;  3DC4 A;  1FMV A;  3WRD A;  2UYI A;  4PJN A;  3T0Q A;  2X2R A;  3LRE A;  3ZFC A;  5LT4 A;  4LNU K;  3X2T A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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3PXNA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations