3T0Q | Genus

Total Genus 104

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	104
sequence length	339
structure length	304
Chain Sequence	GNIRVYCRVRPPLLNEPQDMSHILIEKFNEGAQSLTINRNEILSYNFQFDMIFEPSHTNKEIFEEIRQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNAGDGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKAERSSRSHSVFMVHINGRNLHTGETSQGKLNLVDLAGSERINTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVNS

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Motor protein
source organism	Ashbya gossypii
publication title	Crystal structure of the Kar3-like kinesin motor domain from the filamentous fungus Ashbya gossypii. pubmed doi rcsb
molecule keywords	AGR253Wp
total genus	104
structure length	304
sequence length	339
ec nomenclature
pdb deposition date	2011-07-20

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00225	Kinesin	Kinesin motor domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.40.850.10	Alpha Beta	3-Layer(aba) Sandwich	Kinesin	Kinesin motor domain	3t0qA00

5LT3A 1I6IA 1MMDA 1FMVA 2GRYA 1I5SA 2ZFMA 4FRZA 4PFOA 1T5CA 2VVGA 1II6A 2ZFIA 4H1GA 1VOMA 4LNUK 1F9UA 1V8JA 1VFVA 1BR4A 2IEHA 1MNEA 1MMAA 2XAEA 2VB6A 2XT3A 2Y65A 4PFPA 3PXNA 2UYIA 1CZ7A 3K5EA 4AS7A 1MKJA 1D0ZA 4BN2A 4PJNA 2WOGA 3X2TA 2X7CA 4AP0A 2NCDA 3CJOA 3COBA 2X51A 1D1CA 4A50A 1FMWA 4A1ZA 5HLEA 1BG2A 1Q0BA 1X88A 3LREA 3ZFDA 1LKXA 1BR2A 1MMNA 3WRDA 1LVKA 2GM1A 3WPNA 3H4SA 4BXNA 2FL6A 4BBGA 3ZFCA 4A5YA 3KARA 3BFNA 3ZCWA 3T0QA 3CNZA 4HNAK 4PJMA 3L9HA 3B6UA 1VFXA 4E7SA 5LT2A 2ZFKA 1KK7A 2VASA 3B6VA 3DC4A 1V8KA 4DBQA 3NWNA 2V26A 2OWMA 1F9VA 3HQDA 2KINA 3KENA 3K3BA 2Q2ZA 1F9WA 4GKRA 4B7BA 2X7EA 4E7ZA 3U06A 2UYMA 1BR1A 2ZFLA 4DBRA 2X7DA 2G1QA 2Y5WA 4PK4A 1D0YA 4ZHIA 1D1AA 2FKYA 4PJJA 5GSZA 4A14A 1G8XA 2FMEA 1F9TA 5LT4A 4Y05A 2MYSA 4A51A 1YRSA 3DCBA 2PG2A 4PJLA 2Q2YA 1VFWA 4ETPA 2X2RA 4A28A 2HEHA 1N6MA 2ZFJA 1D0XA 1VFZA 3GBJA 4ANJA 1GOJA 5LT1A 1MMGA 3KINA 4UBFA 1D1BA 2FL2A 5LT0A 3L1CA 4ZCAA 1RY6A 1SDMA
chains in the Genus database with same CATH superfamily

5LT3A 1I6IA 1MMDA 1FMVA 2GRYA 1I5SA 2ZFMA 4FRZA 4PFOA 1T5CA 2VVGA 1II6A 2ZFIA 4H1GA 1VOMA 4LNUK 1F9UA 1V8JA 1VFVA 1BR4A 2IEHA 1MNEA 1MMAA 2XAEA 2VB6A 2XT3A 2Y65A 4PFPA 3PXNA 2UYIA 1CZ7A 3K5EA 4AS7A 1MKJA 1D0ZA 4BN2A 4PJNA 2WOGA 3X2TA 2X7CA 4AP0A 2NCDA 4GKQA 3CJOA 3COBA 2X51A 1D1CA 4A50A 1FMWA 4A1ZA 5HLEA 1BG2A 1Q0BA 1X88A 3LREA 3ZFDA 1LKXA 1BR2A 1MMNA 3WRDA 1LVKA 2GM1A 3WPNA 3H4SA 4BXNA 2FL6A 4BBGA 3ZFCA 4A5YA 3KARA 3BFNA 3ZCWA 3T0QA 3CNZA 4HNAK 2O0AA 4PJMA 3L9HA 3B6UA 1VFXA 4E7SA 5LT2A 2ZFKA 1KK7A 2VASA 3B6VA 3DC4A 1V8KA 4DBQA 3NWNA 2V26A 2OWMA 1F9VA 3HQDA 2KINA 3KENA 3K3BA 2Q2ZA 1F9WA 4GKRA 4B7BA 2X7EA 4E7ZA 3U06A 2UYMA 1BR1A 4ETPB 2ZFLA 4DBRA 2X7DA 2G1QA 2Y5WA 4PK4A 4GKPA 1D0YA 4ZHIA 1D1AA 2FKYA 4PJJA 5GSZA 4A14A 1G8XA 2FMEA 1F9TA 5LT4A 4Y05A 2MYSA 4A51A 1YRSA 3DCBA 2PG2A 4PJLA 2Q2YA 1VFWA 4ETPA 2X2RA 4A28A 2HEHA 1N6MA 2ZFJA 1D0XA 1VFZA 3GBJA 4ANJA 1GOJA 5LT1A 1MMGA 3KINA 4UBFA 1D1BA 2FL2A 5LT0A 3L1CA 4ZCAA 1RY6A 1SDMA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 5LT3 A;  1I6I A;  1MMD A;  1FMV A;  2GRY A;  1I5S A;  2ZFM A;  4FRZ A;  4PFO A;  1T5C A;  2VVG A;  1II6 A;  2ZFI A;  4H1G A;  1VOM A;  4LNU K;  1F9U A;  1V8J A;  1VFV A;  1BR4 A;  2IEH A;  1MNE A;  1MMA A;  2XAE A;  2VB6 A;  2XT3 A;  2Y65 A;  4PFP A;  3PXN A;  2UYI A;  1CZ7 A;  3K5E A;  4AS7 A;  1MKJ A;  1D0Z A;  4BN2 A;  4PJN A;  2WOG A;  3X2T A;  2X7C A;  4AP0 A;  2NCD A;  3CJO A;  3COB A;  2X51 A;  1D1C A;  4A50 A;  1FMW A;  4A1Z A;  5HLE A;  1BG2 A;  1Q0B A;  1X88 A;  3LRE A;  3ZFD A;  1LKX A;  1BR2 A;  1MMN A;  3WRD A;  1LVK A;  2GM1 A;  3WPN A;  3H4S A;  4BXN A;  2FL6 A;  4BBG A;  3ZFC A;  4A5Y A;  3KAR A;  3BFN A;  3ZCW A;  3T0Q A;  3CNZ A;  4HNA K;  4PJM A;  3L9H A;  3B6U A;  1VFX A;  4E7S A;  5LT2 A;  2ZFK A;  1KK7 A;  2VAS A;  3B6V A;  3DC4 A;  1V8K A;  4DBQ A;  3NWN A;  2V26 A;  2OWM A;  1F9V A;  3HQD A;  2KIN A;  3KEN A;  3K3B A;  2Q2Z A;  1F9W A;  4GKR A;  4B7B A;  2X7E A;  4E7Z A;  3U06 A;  2UYM A;  1BR1 A;  2ZFL A;  4DBR A;  2X7D A;  2G1Q A;  2Y5W A;  4PK4 A;  1D0Y A;  4ZHI A;  1D1A A;  2FKY A;  4PJJ A;  5GSZ A;  4A14 A;  1G8X A;  2FME A;  1F9T A;  5LT4 A;  4Y05 A;  2MYS A;  4A51 A;  1YRS A;  3DCB A;  2PG2 A;  4PJL A;  2Q2Y A;  1VFW A;  4ETP A;  2X2R A;  4A28 A;  2HEH A;  1N6M A;  2ZFJ A;  1D0X A;  1VFZ A;  3GBJ A;  4ANJ A;  1GOJ A;  5LT1 A;  1MMG A;  3KIN A;  4UBF A;  1D1B A;  2FL2 A;  5LT0 A;  3L1C A;  4ZCA A;  1RY6 A;  1SDM A; 
#chains in the Genus database with same CATH topology
 5LT3 A;  1I6I A;  1MMD A;  1FMV A;  2GRY A;  1I5S A;  2ZFM A;  4FRZ A;  4PFO A;  1T5C A;  2VVG A;  1II6 A;  2ZFI A;  4H1G A;  1VOM A;  4LNU K;  1F9U A;  1V8J A;  1VFV A;  1BR4 A;  2IEH A;  1MNE A;  1MMA A;  2XAE A;  2VB6 A;  2XT3 A;  2Y65 A;  4PFP A;  3PXN A;  2UYI A;  1CZ7 A;  3K5E A;  4AS7 A;  1MKJ A;  1D0Z A;  4BN2 A;  4PJN A;  2WOG A;  3X2T A;  2X7C A;  4AP0 A;  2NCD A;  4GKQ A;  3CJO A;  3COB A;  2X51 A;  1D1C A;  4A50 A;  1FMW A;  4A1Z A;  5HLE A;  1BG2 A;  1Q0B A;  1X88 A;  3LRE A;  3ZFD A;  1LKX A;  1BR2 A;  1MMN A;  3WRD A;  1LVK A;  2GM1 A;  3WPN A;  3H4S A;  4BXN A;  2FL6 A;  4BBG A;  3ZFC A;  4A5Y A;  3KAR A;  3BFN A;  3ZCW A;  3T0Q A;  3CNZ A;  4HNA K;  2O0A A;  4PJM A;  3L9H A;  3B6U A;  1VFX A;  4E7S A;  5LT2 A;  2ZFK A;  1KK7 A;  2VAS A;  3B6V A;  3DC4 A;  1V8K A;  4DBQ A;  3NWN A;  2V26 A;  2OWM A;  1F9V A;  3HQD A;  2KIN A;  3KEN A;  3K3B A;  2Q2Z A;  1F9W A;  4GKR A;  4B7B A;  2X7E A;  4E7Z A;  3U06 A;  2UYM A;  1BR1 A;  4ETP B;  2ZFL A;  4DBR A;  2X7D A;  2G1Q A;  2Y5W A;  4PK4 A;  4GKP A;  1D0Y A;  4ZHI A;  1D1A A;  2FKY A;  4PJJ A;  5GSZ A;  4A14 A;  1G8X A;  2FME A;  1F9T A;  5LT4 A;  4Y05 A;  2MYS A;  4A51 A;  1YRS A;  3DCB A;  2PG2 A;  4PJL A;  2Q2Y A;  1VFW A;  4ETP A;  2X2R A;  4A28 A;  2HEH A;  1N6M A;  2ZFJ A;  1D0X A;  1VFZ A;  3GBJ A;  4ANJ A;  1GOJ A;  5LT1 A;  1MMG A;  3KIN A;  4UBF A;  1D1B A;  2FL2 A;  5LT0 A;  3L1C A;  4ZCA A;  1RY6 A;  1SDM A; 
#chains in the Genus database with same CATH homology
 5LT3 A;  1I6I A;  1MMD A;  1FMV A;  2GRY A;  1I5S A;  2ZFM A;  4FRZ A;  4PFO A;  1T5C A;  2VVG A;  1II6 A;  2ZFI A;  4H1G A;  1VOM A;  4LNU K;  1F9U A;  1V8J A;  1VFV A;  1BR4 A;  2IEH A;  1MNE A;  1MMA A;  2XAE A;  2VB6 A;  2XT3 A;  2Y65 A;  4PFP A;  3PXN A;  2UYI A;  1CZ7 A;  3K5E A;  4AS7 A;  1MKJ A;  1D0Z A;  4BN2 A;  4PJN A;  2WOG A;  3X2T A;  2X7C A;  4AP0 A;  2NCD A;  3CJO A;  3COB A;  2X51 A;  1D1C A;  4A50 A;  1FMW A;  4A1Z A;  5HLE A;  1BG2 A;  1Q0B A;  1X88 A;  3LRE A;  3ZFD A;  1LKX A;  1BR2 A;  1MMN A;  3WRD A;  1LVK A;  2GM1 A;  3WPN A;  3H4S A;  4BXN A;  2FL6 A;  4BBG A;  3ZFC A;  4A5Y A;  3KAR A;  3BFN A;  3ZCW A;  3T0Q A;  3CNZ A;  4HNA K;  4PJM A;  3L9H A;  3B6U A;  1VFX A;  4E7S A;  5LT2 A;  2ZFK A;  1KK7 A;  2VAS A;  3B6V A;  3DC4 A;  1V8K A;  4DBQ A;  3NWN A;  2V26 A;  2OWM A;  1F9V A;  3HQD A;  2KIN A;  3KEN A;  3K3B A;  2Q2Z A;  1F9W A;  4GKR A;  4B7B A;  2X7E A;  4E7Z A;  3U06 A;  2UYM A;  1BR1 A;  2ZFL A;  4DBR A;  2X7D A;  2G1Q A;  2Y5W A;  4PK4 A;  1D0Y A;  4ZHI A;  1D1A A;  2FKY A;  4PJJ A;  5GSZ A;  4A14 A;  1G8X A;  2FME A;  1F9T A;  5LT4 A;  4Y05 A;  2MYS A;  4A51 A;  1YRS A;  3DCB A;  2PG2 A;  4PJL A;  2Q2Y A;  1VFW A;  4ETP A;  2X2R A;  4A28 A;  2HEH A;  1N6M A;  2ZFJ A;  1D0X A;  1VFZ A;  3GBJ A;  4ANJ A;  1GOJ A;  5LT1 A;  1MMG A;  3KIN A;  4UBF A;  1D1B A;  2FL2 A;  5LT0 A;  3L1C A;  4ZCA A;  1RY6 A;  1SDM A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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3T0QA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations