4ETPA

C-terminal motor and motor homology domain of kar3vik1 fused to a synthetic heterodimeric coiled coil
Total Genus 130
50100150200250300350020406080100120
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
130
sequence length
393
structure length
379
Chain Sequence
IAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANRTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNST
5010015020025030035035030025020015010050
020406080100120Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (332-384)EMPTYUpdating...
connected with : NaN
molecule tags Motor protein
source organism Saccharomyces cerevisiae
publication title Kar3Vik1, a member of the kinesin-14 superfamily, shows a novel kinesin microtubule binding pattern.
pubmed doi rcsb
molecule keywords Kinesin-like protein KAR3
total genus 130
structure length 379
sequence length 393
ec nomenclature
pdb deposition date 2012-04-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00225 Kinesin Kinesin motor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.850.10 Alpha Beta 3-Layer(aba) Sandwich Kinesin Kinesin motor domain 4etpA00
5LT4A 4LNUK 1II6A 3B6UA 4PJJA 3DC4A 4FRZA 4E7ZA 2VB6A 2ZFIA 2IEHA 3WPNA 1LVKA 3WRDA 1F9WA 2FL6A 1BR4A 1N6MA 5LT2A 3LREA 2XAEA 1RY6A 1SDMA 4DBQA 1VFZA 1MMAA 1I6IA 4ANJA 1LKXA 4HNAK 1V8JA 4PFOA 2ZFMA 1F9VA 2KINA 4H1GA 4ZHIA 1KK7A 2GRYA 4A1ZA 4PFPA 4A14A 3CJOA 4DBRA 1Q0BA 3PXNA 1MMNA 2MYSA 3B6VA 1GOJA 2Q2YA 4PJLA 4PK4A 1YRSA 2X2RA 4AS7A 3BFNA 5LT0A 2V26A 4ZCAA 1VFXA 1BG2A 4A51A 2Y65A 4BBGA 3COBA 3CNZA 2WOGA 3L9HA 3NWNA 2G1QA 3KINA 4A28A 1D0YA 3GBJA 1D1CA 4E7SA 2HEHA 4AP0A 1MNEA 2Q2ZA 2GM1A 2Y5WA 4PJMA 2ZFJA 1VOMA 2VVGA 3X2TA 2FKYA 1D0XA 5GSZA 1MMGA 4GKRA 3HQDA 2UYIA 1BR2A 2FMEA 1MMDA 1VFWA 3H4SA 1X88A 1VFVA 3ZFCA 4A50A 4UBFA 4BN2A 2VASA 5LT1A 1D1BA 1I5SA 4B7BA 3K5EA 4BXNA 2PG2A 2ZFKA 2X7EA 3DCBA 3KARA 1FMWA 3L1CA 2OWMA 1BR1A 1FMVA 2X51A 2X7DA 2FL2A 3ZCWA 3K3BA 1F9TA 4A5YA 1V8KA 3ZFDA 1MKJA 2XT3A 5HLEA 3U06A 1D1AA 2X7CA 1T5CA 3T0QA 1CZ7A 5LT3A 4PJNA 1D0ZA 1F9UA 2ZFLA 2UYMA 4Y05A 3KENA 2NCDA 4ETPA 1G8XA
chains in the Genus database with same CATH superfamily
5LT4A 4LNUK 1II6A 3B6UA 4PJJA 3DC4A 4FRZA 4E7ZA 2VB6A 2ZFIA 2IEHA 3WPNA 1LVKA 3WRDA 1F9WA 2FL6A 1BR4A 1N6MA 5LT2A 3LREA 2XAEA 1RY6A 1SDMA 4DBQA 1VFZA 1MMAA 1I6IA 4ANJA 1LKXA 4HNAK 1V8JA 4PFOA 2ZFMA 1F9VA 2KINA 4H1GA 4ZHIA 1KK7A 2GRYA 4A1ZA 4PFPA 4A14A 3CJOA 4DBRA 1Q0BA 3PXNA 4GKQA 1MMNA 2MYSA 3B6VA 1GOJA 2Q2YA 4PJLA 4PK4A 1YRSA 2X2RA 4AS7A 3BFNA 5LT0A 2V26A 4ZCAA 1VFXA 1BG2A 4A51A 2Y65A 4BBGA 3COBA 3CNZA 2WOGA 3L9HA 3NWNA 2G1QA 3KINA 4A28A 1D0YA 3GBJA 1D1CA 4E7SA 2HEHA 4AP0A 1MNEA 2Q2ZA 2GM1A 2Y5WA 4PJMA 2ZFJA 1VOMA 2O0AA 2VVGA 3X2TA 2FKYA 1D0XA 5GSZA 1MMGA 4GKRA 3HQDA 2UYIA 1BR2A 2FMEA 1MMDA 1VFWA 3H4SA 1X88A 1VFVA 3ZFCA 4A50A 4UBFA 4BN2A 2VASA 5LT1A 1D1BA 1I5SA 4B7BA 3K5EA 4BXNA 2PG2A 2ZFKA 2X7EA 3DCBA 3KARA 1FMWA 3L1CA 2OWMA 1BR1A 1FMVA 2X51A 2X7DA 2FL2A 3ZCWA 3K3BA 1F9TA 4A5YA 1V8KA 3ZFDA 1MKJA 2XT3A 5HLEA 4GKPA 3U06A 1D1AA 2X7CA 1T5CA 3T0QA 1CZ7A 5LT3A 4PJNA 1D0ZA 1F9UA 2ZFLA 2UYMA 4Y05A 3KENA 2NCDA 4ETPA 4ETPB 1G8XA
chains in the Genus database with same CATH topology
5LT4A 4LNUK 1II6A 3B6UA 4PJJA 3DC4A 4FRZA 4E7ZA 2VB6A 2ZFIA 2IEHA 3WPNA 1LVKA 3WRDA 1F9WA 2FL6A 1BR4A 1N6MA 5LT2A 3LREA 2XAEA 1RY6A 1SDMA 4DBQA 1VFZA 1MMAA 1I6IA 4ANJA 1LKXA 4HNAK 1V8JA 4PFOA 2ZFMA 1F9VA 2KINA 4H1GA 4ZHIA 1KK7A 2GRYA 4A1ZA 4PFPA 4A14A 3CJOA 4DBRA 1Q0BA 3PXNA 1MMNA 2MYSA 3B6VA 1GOJA 2Q2YA 4PJLA 4PK4A 1YRSA 2X2RA 4AS7A 3BFNA 5LT0A 2V26A 4ZCAA 1VFXA 1BG2A 4A51A 2Y65A 4BBGA 3COBA 3CNZA 2WOGA 3L9HA 3NWNA 2G1QA 3KINA 4A28A 1D0YA 3GBJA 1D1CA 4E7SA 2HEHA 4AP0A 1MNEA 2Q2ZA 2GM1A 2Y5WA 4PJMA 2ZFJA 1VOMA 2VVGA 3X2TA 2FKYA 1D0XA 5GSZA 1MMGA 4GKRA 3HQDA 2UYIA 1BR2A 2FMEA 1MMDA 1VFWA 3H4SA 1X88A 1VFVA 3ZFCA 4A50A 4UBFA 4BN2A 2VASA 5LT1A 1D1BA 1I5SA 4B7BA 3K5EA 4BXNA 2PG2A 2ZFKA 2X7EA 3DCBA 3KARA 1FMWA 3L1CA 2OWMA 1BR1A 1FMVA 2X51A 2X7DA 2FL2A 3ZCWA 3K3BA 1F9TA 4A5YA 1V8KA 3ZFDA 1MKJA 2XT3A 5HLEA 3U06A 1D1AA 2X7CA 1T5CA 3T0QA 1CZ7A 5LT3A 4PJNA 1D0ZA 1F9UA 2ZFLA 2UYMA 4Y05A 3KENA 2NCDA 4ETPA 1G8XA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5LT4 A;  4LNU K;  1II6 A;  3B6U A;  4PJJ A;  3DC4 A;  4FRZ A;  4E7Z A;  2VB6 A;  2ZFI A;  2IEH A;  3WPN A;  1LVK A;  3WRD A;  1F9W A;  2FL6 A;  1BR4 A;  1N6M A;  5LT2 A;  3LRE A;  2XAE A;  1RY6 A;  1SDM A;  4DBQ A;  1VFZ A;  1MMA A;  1I6I A;  4ANJ A;  1LKX A;  4HNA K;  1V8J A;  4PFO A;  2ZFM A;  1F9V A;  2KIN A;  4H1G A;  4ZHI A;  1KK7 A;  2GRY A;  4A1Z A;  4PFP A;  4A14 A;  3CJO A;  4DBR A;  1Q0B A;  3PXN A;  1MMN A;  2MYS A;  3B6V A;  1GOJ A;  2Q2Y A;  4PJL A;  4PK4 A;  1YRS A;  2X2R A;  4AS7 A;  3BFN A;  5LT0 A;  2V26 A;  4ZCA A;  1VFX A;  1BG2 A;  4A51 A;  2Y65 A;  4BBG A;  3COB A;  3CNZ A;  2WOG A;  3L9H A;  3NWN A;  2G1Q A;  3KIN A;  4A28 A;  1D0Y A;  3GBJ A;  1D1C A;  4E7S A;  2HEH A;  4AP0 A;  1MNE A;  2Q2Z A;  2GM1 A;  2Y5W A;  4PJM A;  2ZFJ A;  1VOM A;  2VVG A;  3X2T A;  2FKY A;  1D0X A;  5GSZ A;  1MMG A;  4GKR A;  3HQD A;  2UYI A;  1BR2 A;  2FME A;  1MMD A;  1VFW A;  3H4S A;  1X88 A;  1VFV A;  3ZFC A;  4A50 A;  4UBF A;  4BN2 A;  2VAS A;  5LT1 A;  1D1B A;  1I5S A;  4B7B A;  3K5E A;  4BXN A;  2PG2 A;  2ZFK A;  2X7E A;  3DCB A;  3KAR A;  1FMW A;  3L1C A;  2OWM A;  1BR1 A;  1FMV A;  2X51 A;  2X7D A;  2FL2 A;  3ZCW A;  3K3B A;  1F9T A;  4A5Y A;  1V8K A;  3ZFD A;  1MKJ A;  2XT3 A;  5HLE A;  3U06 A;  1D1A A;  2X7C A;  1T5C A;  3T0Q A;  1CZ7 A;  5LT3 A;  4PJN A;  1D0Z A;  1F9U A;  2ZFL A;  2UYM A;  4Y05 A;  3KEN A;  2NCD A;  4ETP A;  1G8X A; 
#chains in the Genus database with same CATH topology
 5LT4 A;  4LNU K;  1II6 A;  3B6U A;  4PJJ A;  3DC4 A;  4FRZ A;  4E7Z A;  2VB6 A;  2ZFI A;  2IEH A;  3WPN A;  1LVK A;  3WRD A;  1F9W A;  2FL6 A;  1BR4 A;  1N6M A;  5LT2 A;  3LRE A;  2XAE A;  1RY6 A;  1SDM A;  4DBQ A;  1VFZ A;  1MMA A;  1I6I A;  4ANJ A;  1LKX A;  4HNA K;  1V8J A;  4PFO A;  2ZFM A;  1F9V A;  2KIN A;  4H1G A;  4ZHI A;  1KK7 A;  2GRY A;  4A1Z A;  4PFP A;  4A14 A;  3CJO A;  4DBR A;  1Q0B A;  3PXN A;  4GKQ A;  1MMN A;  2MYS A;  3B6V A;  1GOJ A;  2Q2Y A;  4PJL A;  4PK4 A;  1YRS A;  2X2R A;  4AS7 A;  3BFN A;  5LT0 A;  2V26 A;  4ZCA A;  1VFX A;  1BG2 A;  4A51 A;  2Y65 A;  4BBG A;  3COB A;  3CNZ A;  2WOG A;  3L9H A;  3NWN A;  2G1Q A;  3KIN A;  4A28 A;  1D0Y A;  3GBJ A;  1D1C A;  4E7S A;  2HEH A;  4AP0 A;  1MNE A;  2Q2Z A;  2GM1 A;  2Y5W A;  4PJM A;  2ZFJ A;  1VOM A;  2O0A A;  2VVG A;  3X2T A;  2FKY A;  1D0X A;  5GSZ A;  1MMG A;  4GKR A;  3HQD A;  2UYI A;  1BR2 A;  2FME A;  1MMD A;  1VFW A;  3H4S A;  1X88 A;  1VFV A;  3ZFC A;  4A50 A;  4UBF A;  4BN2 A;  2VAS A;  5LT1 A;  1D1B A;  1I5S A;  4B7B A;  3K5E A;  4BXN A;  2PG2 A;  2ZFK A;  2X7E A;  3DCB A;  3KAR A;  1FMW A;  3L1C A;  2OWM A;  1BR1 A;  1FMV A;  2X51 A;  2X7D A;  2FL2 A;  3ZCW A;  3K3B A;  1F9T A;  4A5Y A;  1V8K A;  3ZFD A;  1MKJ A;  2XT3 A;  5HLE A;  4GKP A;  3U06 A;  1D1A A;  2X7C A;  1T5C A;  3T0Q A;  1CZ7 A;  5LT3 A;  4PJN A;  1D0Z A;  1F9U A;  2ZFL A;  2UYM A;  4Y05 A;  3KEN A;  2NCD A;  4ETP A;  4ETP B;  1G8X A; 
#chains in the Genus database with same CATH homology
 5LT4 A;  4LNU K;  1II6 A;  3B6U A;  4PJJ A;  3DC4 A;  4FRZ A;  4E7Z A;  2VB6 A;  2ZFI A;  2IEH A;  3WPN A;  1LVK A;  3WRD A;  1F9W A;  2FL6 A;  1BR4 A;  1N6M A;  5LT2 A;  3LRE A;  2XAE A;  1RY6 A;  1SDM A;  4DBQ A;  1VFZ A;  1MMA A;  1I6I A;  4ANJ A;  1LKX A;  4HNA K;  1V8J A;  4PFO A;  2ZFM A;  1F9V A;  2KIN A;  4H1G A;  4ZHI A;  1KK7 A;  2GRY A;  4A1Z A;  4PFP A;  4A14 A;  3CJO A;  4DBR A;  1Q0B A;  3PXN A;  1MMN A;  2MYS A;  3B6V A;  1GOJ A;  2Q2Y A;  4PJL A;  4PK4 A;  1YRS A;  2X2R A;  4AS7 A;  3BFN A;  5LT0 A;  2V26 A;  4ZCA A;  1VFX A;  1BG2 A;  4A51 A;  2Y65 A;  4BBG A;  3COB A;  3CNZ A;  2WOG A;  3L9H A;  3NWN A;  2G1Q A;  3KIN A;  4A28 A;  1D0Y A;  3GBJ A;  1D1C A;  4E7S A;  2HEH A;  4AP0 A;  1MNE A;  2Q2Z A;  2GM1 A;  2Y5W A;  4PJM A;  2ZFJ A;  1VOM A;  2VVG A;  3X2T A;  2FKY A;  1D0X A;  5GSZ A;  1MMG A;  4GKR A;  3HQD A;  2UYI A;  1BR2 A;  2FME A;  1MMD A;  1VFW A;  3H4S A;  1X88 A;  1VFV A;  3ZFC A;  4A50 A;  4UBF A;  4BN2 A;  2VAS A;  5LT1 A;  1D1B A;  1I5S A;  4B7B A;  3K5E A;  4BXN A;  2PG2 A;  2ZFK A;  2X7E A;  3DCB A;  3KAR A;  1FMW A;  3L1C A;  2OWM A;  1BR1 A;  1FMV A;  2X51 A;  2X7D A;  2FL2 A;  3ZCW A;  3K3B A;  1F9T A;  4A5Y A;  1V8K A;  3ZFD A;  1MKJ A;  2XT3 A;  5HLE A;  3U06 A;  1D1A A;  2X7C A;  1T5C A;  3T0Q A;  1CZ7 A;  5LT3 A;  4PJN A;  1D0Z A;  1F9U A;  2ZFL A;  2UYM A;  4Y05 A;  3KEN A;  2NCD A;  4ETP A;  1G8X A; 
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