4ZCA | Genus

Total Genus 101

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	101
sequence length	350
structure length	334
Chain Sequence	GKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGEYTWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAFSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSERAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEV

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Motor protein
source organism	Homo sapiens
publication title	Eg5 rcsb
molecule keywords	Kinesin-like protein KIF11
total genus	101
structure length	334
sequence length	350
chains with identical sequence	B
ec nomenclature
pdb deposition date	2015-04-15

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00225	Kinesin	Kinesin motor domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.40.850.10	Alpha Beta	3-Layer(aba) Sandwich	Kinesin	Kinesin motor domain	4zcaA00

4A14A 3DC4A 4A28A 3U06A 4ZHIA 4E7SA 4B7BA 1VFXA 2FL6A 1VFVA 4ANJA 1N6MA 1LKXA 3KINA 2Y5WA 1SDMA 4FRZA 1V8KA 2Y65A 1KK7A 2UYIA 2OWMA 1F9UA 2X2RA 1Q0BA 2Q2ZA 3GBJA 3CJOA 1GOJA 1D0XA 2ZFLA 2X7DA 2XAEA 1BG2A 4AP0A 1II6A 4BBGA 2MYSA 4BN2A 1I6IA 1BR4A 3DCBA 2X7EA 1MNEA 3LREA 4PJNA 1FMWA 3B6VA 5GSZA 1MMAA 1MMDA 3ZFDA 4HNAK 3COBA 5LT1A 2VASA 1YRSA 4AS7A 2PG2A 2HEHA 4A1ZA 5LT3A 2GRYA 4UBFA 5LT4A 2VVGA 2ZFIA 3L1CA 3CNZA 1T5CA 1X88A 2X7CA 3H4SA 2UYMA 4ZCAA 1D1AA 4BXNA 3BFNA 3ZFCA 2XT3A 5HLEA 2X51A 4PJJA 1F9WA 2G1QA 1D0YA 4DBQA 3K5EA 4PFOA 1G8XA 1BR2A 1MKJA 2V26A 1I5SA 2VB6A 3X2TA 4E7ZA 2ZFMA 1D1BA 4Y05A 3WRDA 3KARA 4GKRA 4DBRA 1MMNA 3B6UA 2Q2YA 1F9TA 2NCDA 4PFPA 1RY6A 4H1GA 1BR1A 1D1CA 3KENA 3T0QA 3HQDA 1V8JA 1D0ZA 1VFWA 2FKYA 2ZFJA 3PXNA 1VFZA 1FMVA 2ZFKA 3NWNA 4PJMA 4A50A 2FMEA 3WPNA 4A51A 4ETPA 2GM1A 4LNUK 4PJLA 1VOMA 3K3BA 1F9VA 2FL2A 4A5YA 5LT2A 3ZCWA 1MMGA 5LT0A 1CZ7A 1LVKA 2IEHA 4PK4A 2KINA 2WOGA 3L9HA
chains in the Genus database with same CATH superfamily

4A14A 4ETPB 3DC4A 4A28A 3U06A 4ZHIA 4E7SA 4B7BA 1VFXA 2FL6A 1VFVA 4ANJA 1N6MA 1LKXA 3KINA 2Y5WA 1SDMA 4FRZA 1V8KA 1KK7A 2UYIA 2Y65A 2OWMA 1F9UA 2X2RA 2O0AA 4GKPA 1Q0BA 2Q2ZA 3GBJA 3CJOA 1GOJA 1D0XA 2ZFLA 2X7DA 2XAEA 1BG2A 4AP0A 1II6A 4BBGA 2MYSA 4BN2A 1I6IA 1BR4A 3DCBA 2X7EA 1MNEA 3LREA 4PJNA 1FMWA 3B6VA 5GSZA 1MMAA 1MMDA 3ZFDA 4HNAK 3COBA 5LT1A 2VASA 1YRSA 4AS7A 2PG2A 2HEHA 4A1ZA 5LT3A 2GRYA 4UBFA 5LT4A 2VVGA 2ZFIA 3L1CA 3CNZA 1T5CA 1X88A 2X7CA 3H4SA 2UYMA 4ZCAA 1D1AA 4BXNA 3BFNA 3ZFCA 2XT3A 5HLEA 2X51A 4PJJA 1F9WA 2G1QA 1D0YA 4DBQA 3K5EA 4PFOA 1G8XA 1BR2A 1MKJA 2V26A 1I5SA 2VB6A 3X2TA 4E7ZA 2ZFMA 1D1BA 4Y05A 3WRDA 3KARA 4GKRA 4DBRA 1MMNA 3B6UA 2Q2YA 1F9TA 2NCDA 4PFPA 1RY6A 4H1GA 1BR1A 1D1CA 3KENA 3T0QA 3HQDA 1V8JA 1D0ZA 1VFWA 2FKYA 2ZFJA 3PXNA 1VFZA 1FMVA 2ZFKA 3NWNA 4PJMA 4A50A 2FMEA 3WPNA 4A51A 4ETPA 2GM1A 4LNUK 4PJLA 1VOMA 3K3BA 1F9VA 2FL2A 4A5YA 5LT2A 3ZCWA 1MMGA 5LT0A 1CZ7A 1LVKA 4GKQA 2IEHA 4PK4A 2KINA 2WOGA 3L9HA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4A14 A;  3DC4 A;  4A28 A;  3U06 A;  4ZHI A;  4E7S A;  4B7B A;  1VFX A;  2FL6 A;  1VFV A;  4ANJ A;  1N6M A;  1LKX A;  3KIN A;  2Y5W A;  1SDM A;  4FRZ A;  1V8K A;  2Y65 A;  1KK7 A;  2UYI A;  2OWM A;  1F9U A;  2X2R A;  1Q0B A;  2Q2Z A;  3GBJ A;  3CJO A;  1GOJ A;  1D0X A;  2ZFL A;  2X7D A;  2XAE A;  1BG2 A;  4AP0 A;  1II6 A;  4BBG A;  2MYS A;  4BN2 A;  1I6I A;  1BR4 A;  3DCB A;  2X7E A;  1MNE A;  3LRE A;  4PJN A;  1FMW A;  3B6V A;  5GSZ A;  1MMA A;  1MMD A;  3ZFD A;  4HNA K;  3COB A;  5LT1 A;  2VAS A;  1YRS A;  4AS7 A;  2PG2 A;  2HEH A;  4A1Z A;  5LT3 A;  2GRY A;  4UBF A;  5LT4 A;  2VVG A;  2ZFI A;  3L1C A;  3CNZ A;  1T5C A;  1X88 A;  2X7C A;  3H4S A;  2UYM A;  4ZCA A;  1D1A A;  4BXN A;  3BFN A;  3ZFC A;  2XT3 A;  5HLE A;  2X51 A;  4PJJ A;  1F9W A;  2G1Q A;  1D0Y A;  4DBQ A;  3K5E A;  4PFO A;  1G8X A;  1BR2 A;  1MKJ A;  2V26 A;  1I5S A;  2VB6 A;  3X2T A;  4E7Z A;  2ZFM A;  1D1B A;  4Y05 A;  3WRD A;  3KAR A;  4GKR A;  4DBR A;  1MMN A;  3B6U A;  2Q2Y A;  1F9T A;  2NCD A;  4PFP A;  1RY6 A;  4H1G A;  1BR1 A;  1D1C A;  3KEN A;  3T0Q A;  3HQD A;  1V8J A;  1D0Z A;  1VFW A;  2FKY A;  2ZFJ A;  3PXN A;  1VFZ A;  1FMV A;  2ZFK A;  3NWN A;  4PJM A;  4A50 A;  2FME A;  3WPN A;  4A51 A;  4ETP A;  2GM1 A;  4LNU K;  4PJL A;  1VOM A;  3K3B A;  1F9V A;  2FL2 A;  4A5Y A;  5LT2 A;  3ZCW A;  1MMG A;  5LT0 A;  1CZ7 A;  1LVK A;  2IEH A;  4PK4 A;  2KIN A;  2WOG A;  3L9H A; 
#chains in the Genus database with same CATH topology
 4A14 A;  4ETP B;  3DC4 A;  4A28 A;  3U06 A;  4ZHI A;  4E7S A;  4B7B A;  1VFX A;  2FL6 A;  1VFV A;  4ANJ A;  1N6M A;  1LKX A;  3KIN A;  2Y5W A;  1SDM A;  4FRZ A;  1V8K A;  1KK7 A;  2UYI A;  2Y65 A;  2OWM A;  1F9U A;  2X2R A;  2O0A A;  4GKP A;  1Q0B A;  2Q2Z A;  3GBJ A;  3CJO A;  1GOJ A;  1D0X A;  2ZFL A;  2X7D A;  2XAE A;  1BG2 A;  4AP0 A;  1II6 A;  4BBG A;  2MYS A;  4BN2 A;  1I6I A;  1BR4 A;  3DCB A;  2X7E A;  1MNE A;  3LRE A;  4PJN A;  1FMW A;  3B6V A;  5GSZ A;  1MMA A;  1MMD A;  3ZFD A;  4HNA K;  3COB A;  5LT1 A;  2VAS A;  1YRS A;  4AS7 A;  2PG2 A;  2HEH A;  4A1Z A;  5LT3 A;  2GRY A;  4UBF A;  5LT4 A;  2VVG A;  2ZFI A;  3L1C A;  3CNZ A;  1T5C A;  1X88 A;  2X7C A;  3H4S A;  2UYM A;  4ZCA A;  1D1A A;  4BXN A;  3BFN A;  3ZFC A;  2XT3 A;  5HLE A;  2X51 A;  4PJJ A;  1F9W A;  2G1Q A;  1D0Y A;  4DBQ A;  3K5E A;  4PFO A;  1G8X A;  1BR2 A;  1MKJ A;  2V26 A;  1I5S A;  2VB6 A;  3X2T A;  4E7Z A;  2ZFM A;  1D1B A;  4Y05 A;  3WRD A;  3KAR A;  4GKR A;  4DBR A;  1MMN A;  3B6U A;  2Q2Y A;  1F9T A;  2NCD A;  4PFP A;  1RY6 A;  4H1G A;  1BR1 A;  1D1C A;  3KEN A;  3T0Q A;  3HQD A;  1V8J A;  1D0Z A;  1VFW A;  2FKY A;  2ZFJ A;  3PXN A;  1VFZ A;  1FMV A;  2ZFK A;  3NWN A;  4PJM A;  4A50 A;  2FME A;  3WPN A;  4A51 A;  4ETP A;  2GM1 A;  4LNU K;  4PJL A;  1VOM A;  3K3B A;  1F9V A;  2FL2 A;  4A5Y A;  5LT2 A;  3ZCW A;  1MMG A;  5LT0 A;  1CZ7 A;  1LVK A;  4GKQ A;  2IEH A;  4PK4 A;  2KIN A;  2WOG A;  3L9H A; 
#chains in the Genus database with same CATH homology
 4A14 A;  3DC4 A;  4A28 A;  3U06 A;  4ZHI A;  4E7S A;  4B7B A;  1VFX A;  2FL6 A;  1VFV A;  4ANJ A;  1N6M A;  1LKX A;  3KIN A;  2Y5W A;  1SDM A;  4FRZ A;  1V8K A;  2Y65 A;  1KK7 A;  2UYI A;  2OWM A;  1F9U A;  2X2R A;  1Q0B A;  2Q2Z A;  3GBJ A;  3CJO A;  1GOJ A;  1D0X A;  2ZFL A;  2X7D A;  2XAE A;  1BG2 A;  4AP0 A;  1II6 A;  4BBG A;  2MYS A;  4BN2 A;  1I6I A;  1BR4 A;  3DCB A;  2X7E A;  1MNE A;  3LRE A;  4PJN A;  1FMW A;  3B6V A;  5GSZ A;  1MMA A;  1MMD A;  3ZFD A;  4HNA K;  3COB A;  5LT1 A;  2VAS A;  1YRS A;  4AS7 A;  2PG2 A;  2HEH A;  4A1Z A;  5LT3 A;  2GRY A;  4UBF A;  5LT4 A;  2VVG A;  2ZFI A;  3L1C A;  3CNZ A;  1T5C A;  1X88 A;  2X7C A;  3H4S A;  2UYM A;  4ZCA A;  1D1A A;  4BXN A;  3BFN A;  3ZFC A;  2XT3 A;  5HLE A;  2X51 A;  4PJJ A;  1F9W A;  2G1Q A;  1D0Y A;  4DBQ A;  3K5E A;  4PFO A;  1G8X A;  1BR2 A;  1MKJ A;  2V26 A;  1I5S A;  2VB6 A;  3X2T A;  4E7Z A;  2ZFM A;  1D1B A;  4Y05 A;  3WRD A;  3KAR A;  4GKR A;  4DBR A;  1MMN A;  3B6U A;  2Q2Y A;  1F9T A;  2NCD A;  4PFP A;  1RY6 A;  4H1G A;  1BR1 A;  1D1C A;  3KEN A;  3T0Q A;  3HQD A;  1V8J A;  1D0Z A;  1VFW A;  2FKY A;  2ZFJ A;  3PXN A;  1VFZ A;  1FMV A;  2ZFK A;  3NWN A;  4PJM A;  4A50 A;  2FME A;  3WPN A;  4A51 A;  4ETP A;  2GM1 A;  4LNU K;  4PJL A;  1VOM A;  3K3B A;  1F9V A;  2FL2 A;  4A5Y A;  5LT2 A;  3ZCW A;  1MMG A;  5LT0 A;  1CZ7 A;  1LVK A;  2IEH A;  4PK4 A;  2KIN A;  2WOG A;  3L9H A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4ZCAA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations