5LT0A

Nucleotide-free kinesin-1 motor domain, p212121 crystal form
Total Genus 106

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
106
sequence length
319
structure length
303
Chain Sequence
SNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIASKPYAFDRVFQSSTSQEQVYNDAAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGATERFVSSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNARTTIVICCSPSSYNESETKSTLLFGQRAKTI
5010015020025030030025020015010050
020406080100Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV2 (40-43)TI11 (277-280)S1 (9-15)S4 (44-47)TVIII1 (48-51)S6 (79-84)AH8 (281-286)AH1 (20-25)S2 (31-34)S3 (38-41)TIV1 (35-38)AH2 (58-75)S5 (50-52)TII1 (86-89)TIV3 (96-99)TI1 (53-56)AH4 (107-121)S12 (205-216)S13 (222-231)TI10 (276-279)AH3 (91-96)TI2 (98-101)TI3 (101-104)TI4 (102-105)TIV4 (122-126)S7 (126-138)TII3 (191-194)AH7 (256-270)TI5 (144-147)S8 (141-144)TI7 (158-161)TI6 (147-150)TIV6 (145-148)S9 (154-157)AH5 (176-190)S10 (163-166)AH6 (197-203)TVIII3 (194-197)TI9 (217-220)TI8 (216-219)S14 (295-302)TVIII4 (272-275)TI12 (286-289)TII'1 (291-294)TIV9 (287-290)TIV5 (137-140)TVIII2 (148-151)S11 (171-173)TII2 (165-168)Updating...
connected with : NaN
molecule tags Motor protein
source organism Homo sapiens
publication title The structural switch of nucleotide-free kinesin.
pubmed doi rcsb
molecule keywords Kinesin-like protein
total genus 106
structure length 303
sequence length 319
ec nomenclature
pdb deposition date 2016-09-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00225 Kinesin Kinesin motor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.850.10 Alpha Beta 3-Layer(aba) Sandwich Kinesin Kinesin motor domain 5lt0A00
1I5SA 1G8XA 1D1CA 4A50A 4DBRA 1BR1A 1D0XA 2ZFLA 4PK4A 2ZFKA 1MMNA 1VFVA 4A1ZA 4A5YA 3KENA 4HNAK 2X7CA 2Q2ZA 2HEHA 2X2RA 1VFXA 2OWMA 4PFPA 1MKJA 5LT4A 3GBJA 5LT3A 4DBQA 1KK7A 1V8JA 4PJJA 1I6IA 4E7ZA 2MYSA 5HLEA 4PJNA 1YRSA 4PFOA 2ZFJA 3K3BA 2Y65A 3CNZA 2XAEA 4A14A 3DC4A 4AP0A 1N6MA 1SDMA 4ETPA 1D0ZA 1D1BA 2ZFMA 1LKXA 4AS7A 1D0YA 2VASA 1F9UA 3BFNA 3PXNA 1BR2A 3WRDA 2FMEA 2G1QA 1F9TA 1GOJA 3KINA 3WPNA 4Y05A 4BN2A 3COBA 3ZFCA 3U06A 5LT0A 2PG2A 4ZCAA 1CZ7A 2KINA 1BR4A 3T0QA 3DCBA 1RY6A 1D1AA 1MMAA 5LT2A 2IEHA 3ZCWA 3KARA 2WOGA 4H1GA 3X2TA 1VOMA 4B7BA 2FL6A 3L1CA 1T5CA 1FMWA 1X88A 3K5EA 4ANJA 2VVGA 2UYMA 2X7EA 3HQDA 4LNUK 3H4SA 2GM1A 2V26A 2XT3A 2Q2YA 2UYIA 3CJOA 2VB6A 3NWNA 1FMVA 3ZFDA 1F9WA 2X51A 4PJMA 1II6A 1LVKA 2ZFIA 2FL2A 2GRYA 5GSZA 1MMDA 4BBGA 4UBFA 1V8KA 4PJLA 4BXNA 2NCDA 1F9VA 4FRZA 1VFWA 3B6UA 1MMGA 2FKYA 2Y5WA 4ZHIA 1Q0BA 1BG2A 3B6VA 4A51A 1MNEA 4A28A 4E7SA 5LT1A 2X7DA 3L9HA 3LREA 1VFZA 4GKRA
chains in the Genus database with same CATH superfamily
1I5SA 1G8XA 1D1CA 4A50A 4DBRA 1BR1A 1D0XA 2ZFLA 4PK4A 2ZFKA 1MMNA 4ETPB 1VFVA 4A1ZA 4A5YA 3KENA 4HNAK 2X7CA 2Q2ZA 2HEHA 2X2RA 1VFXA 2OWMA 4PFPA 1MKJA 5LT4A 3GBJA 5LT3A 4DBQA 1KK7A 1V8JA 4PJJA 1I6IA 4E7ZA 2MYSA 5HLEA 4PJNA 1YRSA 4PFOA 2ZFJA 3K3BA 2Y65A 3CNZA 2XAEA 4A14A 3DC4A 4AP0A 1N6MA 1SDMA 4ETPA 1D0ZA 1D1BA 2O0AA 2ZFMA 1LKXA 4AS7A 1D0YA 2VASA 1F9UA 3BFNA 3PXNA 1BR2A 3WRDA 2FMEA 2G1QA 1F9TA 1GOJA 3KINA 3WPNA 4Y05A 4BN2A 3COBA 3ZFCA 3U06A 5LT0A 2PG2A 4ZCAA 1CZ7A 2KINA 1BR4A 3T0QA 3DCBA 1RY6A 1D1AA 4GKPA 1MMAA 5LT2A 2IEHA 3ZCWA 3KARA 2WOGA 4H1GA 3X2TA 1VOMA 4B7BA 2FL6A 3L1CA 1T5CA 1FMWA 1X88A 3K5EA 4ANJA 2VVGA 2UYMA 2X7EA 3HQDA 4LNUK 3H4SA 2GM1A 2V26A 2XT3A 2Q2YA 2UYIA 3CJOA 2VB6A 3NWNA 1FMVA 3ZFDA 1F9WA 2X51A 4PJMA 1II6A 1LVKA 4GKQA 2ZFIA 2FL2A 2GRYA 5GSZA 1MMDA 4BBGA 4UBFA 1V8KA 4PJLA 4BXNA 2NCDA 1F9VA 4FRZA 1VFWA 3B6UA 1MMGA 2FKYA 2Y5WA 4ZHIA 1Q0BA 1BG2A 3B6VA 4A51A 1MNEA 4A28A 4E7SA 5LT1A 2X7DA 3L9HA 3LREA 1VFZA 4GKRA
chains in the Genus database with same CATH topology
1I5SA 1G8XA 1D1CA 4A50A 4DBRA 1BR1A 1D0XA 2ZFLA 4PK4A 2ZFKA 1MMNA 1VFVA 4A1ZA 4A5YA 3KENA 4HNAK 2X7CA 2Q2ZA 2HEHA 2X2RA 1VFXA 2OWMA 4PFPA 1MKJA 5LT4A 3GBJA 5LT3A 4DBQA 1KK7A 1V8JA 4PJJA 1I6IA 4E7ZA 2MYSA 5HLEA 4PJNA 1YRSA 4PFOA 2ZFJA 3K3BA 2Y65A 3CNZA 2XAEA 4A14A 3DC4A 4AP0A 1N6MA 1SDMA 4ETPA 1D0ZA 1D1BA 2ZFMA 1LKXA 4AS7A 1D0YA 2VASA 1F9UA 3BFNA 3PXNA 1BR2A 3WRDA 2FMEA 2G1QA 1F9TA 1GOJA 3KINA 3WPNA 4Y05A 4BN2A 3COBA 3ZFCA 3U06A 5LT0A 2PG2A 4ZCAA 1CZ7A 2KINA 1BR4A 3T0QA 3DCBA 1RY6A 1D1AA 1MMAA 5LT2A 2IEHA 3ZCWA 3KARA 2WOGA 4H1GA 3X2TA 1VOMA 4B7BA 2FL6A 3L1CA 1T5CA 1FMWA 1X88A 3K5EA 4ANJA 2VVGA 2UYMA 2X7EA 3HQDA 4LNUK 3H4SA 2GM1A 2V26A 2XT3A 2Q2YA 2UYIA 3CJOA 2VB6A 3NWNA 1FMVA 3ZFDA 1F9WA 2X51A 4PJMA 1II6A 1LVKA 2ZFIA 2FL2A 2GRYA 5GSZA 1MMDA 4BBGA 4UBFA 1V8KA 4PJLA 4BXNA 2NCDA 1F9VA 4FRZA 1VFWA 3B6UA 1MMGA 2FKYA 2Y5WA 4ZHIA 1Q0BA 1BG2A 3B6VA 4A51A 1MNEA 4A28A 4E7SA 5LT1A 2X7DA 3L9HA 3LREA 1VFZA 4GKRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1I5S A;  1G8X A;  1D1C A;  4A50 A;  4DBR A;  1BR1 A;  1D0X A;  2ZFL A;  4PK4 A;  2ZFK A;  1MMN A;  1VFV A;  4A1Z A;  4A5Y A;  3KEN A;  4HNA K;  2X7C A;  2Q2Z A;  2HEH A;  2X2R A;  1VFX A;  2OWM A;  4PFP A;  1MKJ A;  5LT4 A;  3GBJ A;  5LT3 A;  4DBQ A;  1KK7 A;  1V8J A;  4PJJ A;  1I6I A;  4E7Z A;  2MYS A;  5HLE A;  4PJN A;  1YRS A;  4PFO A;  2ZFJ A;  3K3B A;  2Y65 A;  3CNZ A;  2XAE A;  4A14 A;  3DC4 A;  4AP0 A;  1N6M A;  1SDM A;  4ETP A;  1D0Z A;  1D1B A;  2ZFM A;  1LKX A;  4AS7 A;  1D0Y A;  2VAS A;  1F9U A;  3BFN A;  3PXN A;  1BR2 A;  3WRD A;  2FME A;  2G1Q A;  1F9T A;  1GOJ A;  3KIN A;  3WPN A;  4Y05 A;  4BN2 A;  3COB A;  3ZFC A;  3U06 A;  5LT0 A;  2PG2 A;  4ZCA A;  1CZ7 A;  2KIN A;  1BR4 A;  3T0Q A;  3DCB A;  1RY6 A;  1D1A A;  1MMA A;  5LT2 A;  2IEH A;  3ZCW A;  3KAR A;  2WOG A;  4H1G A;  3X2T A;  1VOM A;  4B7B A;  2FL6 A;  3L1C A;  1T5C A;  1FMW A;  1X88 A;  3K5E A;  4ANJ A;  2VVG A;  2UYM A;  2X7E A;  3HQD A;  4LNU K;  3H4S A;  2GM1 A;  2V26 A;  2XT3 A;  2Q2Y A;  2UYI A;  3CJO A;  2VB6 A;  3NWN A;  1FMV A;  3ZFD A;  1F9W A;  2X51 A;  4PJM A;  1II6 A;  1LVK A;  2ZFI A;  2FL2 A;  2GRY A;  5GSZ A;  1MMD A;  4BBG A;  4UBF A;  1V8K A;  4PJL A;  4BXN A;  2NCD A;  1F9V A;  4FRZ A;  1VFW A;  3B6U A;  1MMG A;  2FKY A;  2Y5W A;  4ZHI A;  1Q0B A;  1BG2 A;  3B6V A;  4A51 A;  1MNE A;  4A28 A;  4E7S A;  5LT1 A;  2X7D A;  3L9H A;  3LRE A;  1VFZ A;  4GKR A; 
#chains in the Genus database with same CATH topology
 1I5S A;  1G8X A;  1D1C A;  4A50 A;  4DBR A;  1BR1 A;  1D0X A;  2ZFL A;  4PK4 A;  2ZFK A;  1MMN A;  4ETP B;  1VFV A;  4A1Z A;  4A5Y A;  3KEN A;  4HNA K;  2X7C A;  2Q2Z A;  2HEH A;  2X2R A;  1VFX A;  2OWM A;  4PFP A;  1MKJ A;  5LT4 A;  3GBJ A;  5LT3 A;  4DBQ A;  1KK7 A;  1V8J A;  4PJJ A;  1I6I A;  4E7Z A;  2MYS A;  5HLE A;  4PJN A;  1YRS A;  4PFO A;  2ZFJ A;  3K3B A;  2Y65 A;  3CNZ A;  2XAE A;  4A14 A;  3DC4 A;  4AP0 A;  1N6M A;  1SDM A;  4ETP A;  1D0Z A;  1D1B A;  2O0A A;  2ZFM A;  1LKX A;  4AS7 A;  1D0Y A;  2VAS A;  1F9U A;  3BFN A;  3PXN A;  1BR2 A;  3WRD A;  2FME A;  2G1Q A;  1F9T A;  1GOJ A;  3KIN A;  3WPN A;  4Y05 A;  4BN2 A;  3COB A;  3ZFC A;  3U06 A;  5LT0 A;  2PG2 A;  4ZCA A;  1CZ7 A;  2KIN A;  1BR4 A;  3T0Q A;  3DCB A;  1RY6 A;  1D1A A;  4GKP A;  1MMA A;  5LT2 A;  2IEH A;  3ZCW A;  3KAR A;  2WOG A;  4H1G A;  3X2T A;  1VOM A;  4B7B A;  2FL6 A;  3L1C A;  1T5C A;  1FMW A;  1X88 A;  3K5E A;  4ANJ A;  2VVG A;  2UYM A;  2X7E A;  3HQD A;  4LNU K;  3H4S A;  2GM1 A;  2V26 A;  2XT3 A;  2Q2Y A;  2UYI A;  3CJO A;  2VB6 A;  3NWN A;  1FMV A;  3ZFD A;  1F9W A;  2X51 A;  4PJM A;  1II6 A;  1LVK A;  4GKQ A;  2ZFI A;  2FL2 A;  2GRY A;  5GSZ A;  1MMD A;  4BBG A;  4UBF A;  1V8K A;  4PJL A;  4BXN A;  2NCD A;  1F9V A;  4FRZ A;  1VFW A;  3B6U A;  1MMG A;  2FKY A;  2Y5W A;  4ZHI A;  1Q0B A;  1BG2 A;  3B6V A;  4A51 A;  1MNE A;  4A28 A;  4E7S A;  5LT1 A;  2X7D A;  3L9H A;  3LRE A;  1VFZ A;  4GKR A; 
#chains in the Genus database with same CATH homology
 1I5S A;  1G8X A;  1D1C A;  4A50 A;  4DBR A;  1BR1 A;  1D0X A;  2ZFL A;  4PK4 A;  2ZFK A;  1MMN A;  1VFV A;  4A1Z A;  4A5Y A;  3KEN A;  4HNA K;  2X7C A;  2Q2Z A;  2HEH A;  2X2R A;  1VFX A;  2OWM A;  4PFP A;  1MKJ A;  5LT4 A;  3GBJ A;  5LT3 A;  4DBQ A;  1KK7 A;  1V8J A;  4PJJ A;  1I6I A;  4E7Z A;  2MYS A;  5HLE A;  4PJN A;  1YRS A;  4PFO A;  2ZFJ A;  3K3B A;  2Y65 A;  3CNZ A;  2XAE A;  4A14 A;  3DC4 A;  4AP0 A;  1N6M A;  1SDM A;  4ETP A;  1D0Z A;  1D1B A;  2ZFM A;  1LKX A;  4AS7 A;  1D0Y A;  2VAS A;  1F9U A;  3BFN A;  3PXN A;  1BR2 A;  3WRD A;  2FME A;  2G1Q A;  1F9T A;  1GOJ A;  3KIN A;  3WPN A;  4Y05 A;  4BN2 A;  3COB A;  3ZFC A;  3U06 A;  5LT0 A;  2PG2 A;  4ZCA A;  1CZ7 A;  2KIN A;  1BR4 A;  3T0Q A;  3DCB A;  1RY6 A;  1D1A A;  1MMA A;  5LT2 A;  2IEH A;  3ZCW A;  3KAR A;  2WOG A;  4H1G A;  3X2T A;  1VOM A;  4B7B A;  2FL6 A;  3L1C A;  1T5C A;  1FMW A;  1X88 A;  3K5E A;  4ANJ A;  2VVG A;  2UYM A;  2X7E A;  3HQD A;  4LNU K;  3H4S A;  2GM1 A;  2V26 A;  2XT3 A;  2Q2Y A;  2UYI A;  3CJO A;  2VB6 A;  3NWN A;  1FMV A;  3ZFD A;  1F9W A;  2X51 A;  4PJM A;  1II6 A;  1LVK A;  2ZFI A;  2FL2 A;  2GRY A;  5GSZ A;  1MMD A;  4BBG A;  4UBF A;  1V8K A;  4PJL A;  4BXN A;  2NCD A;  1F9V A;  4FRZ A;  1VFW A;  3B6U A;  1MMG A;  2FKY A;  2Y5W A;  4ZHI A;  1Q0B A;  1BG2 A;  3B6V A;  4A51 A;  1MNE A;  4A28 A;  4E7S A;  5LT1 A;  2X7D A;  3L9H A;  3LRE A;  1VFZ A;  4GKR A; 
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