1EO0A

Conserved domain common to transcription factors tfiis, elongin a, crsp70
Total Genus 25
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
77
structure length
77
Chain Sequence
MDSKEVLVHVKNLEKNKSNDAAVLEILHVLDKEFVPTEKLLRETKVGVEVNKFKKSTNVEISKLVKKMISSWKDAIN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (3-16)EMPTYTVIII1 (17-20)TIV3 (55-58)AH4 (60-76)AH2 (20-31)TIV1 (31-34)AH3 (39-52)Updating...
connected with : NaN
publication title Structure of a conserved domain common to the transcription factors TFIIS, elongin A, and CRSP70
pubmed doi rcsb
molecule tags Transcription
source organism Saccharomyces cerevisiae
molecule keywords TRANSCRIPTION ELONGATION FACTOR S-II
total genus 25
structure length 77
sequence length 77
ec nomenclature
pdb deposition date 2000-03-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08711 Med26 TFIIS helical bundle-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.930.10 Mainly Alpha Up-down Bundle Transcription Elongation Factor S-II; Chain A Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1eo0A00
2XPOA 3NFQA 3U88C 3OAKA 1WJTA 3F9KC 3HPGG 2XPLA 2XPPA 3O8ZA 3HPHE 2XPNA 2B4JC 1Z9EA 2N3AB 1EO0A
chains in the Genus database with same CATH superfamily
3NFQA 3IWWA 1FBVA 3O8ZA 3ZNIA 4P4IA 1Z8LA 4OC4A 3PFVA 2JBJA 2OOTA 2PVVA 4RR2B 3SJXA 4OC5A 3VRRA 1DE4C 4P4FA 2XPOA 5F09A 3BUWB 3PT1A 4P4BA 5HKWA 5AXIA 5F13A 4LQGA 4GPLB 3SJGA 3OP0A 3S9NA 4NGRA 3OB1B 3RBUA 3PLFB 2CBLA 2UV8G 4NGNA 2XPLA 2XPPA 3S9MA 4MCQA 3FECA 3FEDA 4NGTA 2B4JC 3BUNB 1EO0A 3D7FA 4BPWB 4NGQA 3KASA 2XEFA 4OC1A 4MCSA 4JZ0A 5HKYA 3BUMB 4NGSA 3VROA 4BPXB 4MCPA 4OC2A 4X3RA 3BXMA 5HKZA 4OC3A 2XEGA 1CX8A 3BUXB 3D7HA 2C6CA 3S9LA 3OB2B 3BUOB 3HMJG 3HPGG 3SJEA 3U88C 3VRPA 2CIJA 3D7GA 5BY0A 4A4BA 3OAKA 3BI1A 4MCRA 2C6PA 2XEIA 3F9KC 4P4EA 5J3XA 2XPNA 3SJFA 3BI0A 1WJTA 4P4JA 4JYWA 2Y1MA 4NGMA 5D29A 2JBKA 4BTFA 3VRNA 5ELYA 2XEJA 3HPHE 3VRQA 4NGPA 2PVWA 2Y1NA 4P45A 4BPUB 3BHXA 4OMEA 3VGOA 4OC0A 4P44A 2OR4A 4P4DA 3FF3A 4W9YA 3D7DA 2VKZG 1Z9EA 1B47A 2C6GA 2DLAA 1YVHA 3FEEA 2N3AB 4A4CA
chains in the Genus database with same CATH topology
2XPOA 3NFQA 3U88C 3OAKA 1WJTA 3F9KC 3HPGG 2XPLA 2XPPA 3O8ZA 3HPHE 2XPNA 2B4JC 1Z9EA 2N3AB 1EO0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XPO A;  3NFQ A;  3U88 C;  3OAK A;  1WJT A;  3F9K C;  3HPG G;  2XPL A;  2XPP A;  3O8Z A;  3HPH E;  2XPN A;  2B4J C;  1Z9E A;  2N3A B;  1EO0 A; 
#chains in the Genus database with same CATH topology
 3NFQ A;  3IWW A;  1FBV A;  3O8Z A;  3ZNI A;  4P4I A;  1Z8L A;  4OC4 A;  3PFV A;  2JBJ A;  2OOT A;  2PVV A;  4RR2 B;  3SJX A;  4OC5 A;  3VRR A;  1DE4 C;  4P4F A;  2XPO A;  5F09 A;  3BUW B;  3PT1 A;  4P4B A;  5HKW A;  5AXI A;  5F13 A;  4LQG A;  4GPL B;  3SJG A;  3OP0 A;  3S9N A;  4NGR A;  3OB1 B;  3RBU A;  3PLF B;  2CBL A;  2UV8 G;  4NGN A;  2XPL A;  2XPP A;  3S9M A;  4MCQ A;  3FEC A;  3FED A;  4NGT A;  2B4J C;  3BUN B;  1EO0 A;  3D7F A;  4BPW B;  4NGQ A;  3KAS A;  2XEF A;  4OC1 A;  4MCS A;  4JZ0 A;  5HKY A;  3BUM B;  4NGS A;  3VRO A;  4BPX B;  4MCP A;  4OC2 A;  4X3R A;  3BXM A;  5HKZ A;  4OC3 A;  2XEG A;  1CX8 A;  3BUX B;  3D7H A;  2C6C A;  3S9L A;  3OB2 B;  3BUO B;  3HMJ G;  3HPG G;  3SJE A;  3U88 C;  3VRP A;  2CIJ A;  3D7G A;  5BY0 A;  4A4B A;  3OAK A;  3BI1 A;  4MCR A;  2C6P A;  2XEI A;  3F9K C;  4P4E A;  5J3X A;  2XPN A;  3SJF A;  3BI0 A;  1WJT A;  4P4J A;  4JYW A;  2Y1M A;  4NGM A;  5D29 A;  2JBK A;  4BTF A;  3VRN A;  5ELY A;  2XEJ A;  3HPH E;  3VRQ A;  4NGP A;  2PVW A;  2Y1N A;  4P45 A;  4BPU B;  3BHX A;  4OME A;  3VGO A;  4OC0 A;  4P44 A;  2OR4 A;  4P4D A;  3FF3 A;  4W9Y A;  3D7D A;  2VKZ G;  1Z9E A;  1B47 A;  2C6G A;  2DLA A;  1YVH A;  3FEE A;  2N3A B;  4A4C A; 
#chains in the Genus database with same CATH homology
 2XPO A;  3NFQ A;  3U88 C;  3OAK A;  1WJT A;  3F9K C;  3HPG G;  2XPL A;  2XPP A;  3O8Z A;  3HPH E;  2XPN A;  2B4J C;  1Z9E A;  2N3A B;  1EO0 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.