2N3AB

Solution structure of ledgf/p75 ibd in complex with pogz peptide (1389-1404)
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
79
structure length
79
Chain Sequence
b'MDSRLQRIHAEIKNSLKIDNLDVNRCIEALDELASLQVTMQQAQKHTEMITTLKKIRRFKVSQVIMEKSTMLYNKFKNM'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Pogo transposable element with ZNF domain
publication title Multiple cellular proteins interact with LEDGF/p75 through a conserved unstructured consensus motif.
pubmed doi rcsb
source organism Homo sapiens
molecule tags Protein binding
total genus 26
structure length 79
sequence length 79
ec nomenclature
pdb deposition date 2015-05-26
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.930.10 Mainly Alpha Up-down Bundle Transcription Elongation Factor S-II; Chain A Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 2n3aB00
2XPNA 3OAKA 3NFQA 2XPLA 1WJTA 3U88C 3HPGG 3HPHE 2N3AB 3O8ZA 2XPOA 2B4JC 1Z9EA 3F9KC 1EO0A 2XPPA
chains in the Genus database with same CATH superfamily
3BUOB 4JZ0A 3VROA 4A4CA 2CIJA 4W9YA 3S9MA 4MCPA 5HKZA 1DE4C 3BI0A 3ZNIA 2N3AB 5F13A 1Z9EA 3KASA 3S9LA 3D7DA 1B47A 5F09A 4MCSA 1Z8LA 4P4FA 4BTFA 3SJXA 3SJGA 2PVWA 1EO0A 4BPXB 3FEEA 4P4BA 3VRQA 4P44A 5HKWA 4OMEA 2VKZG 3FEDA 3HMJG 3OAKA 5HKYA 3OB2B 4OC2A 2C6GA 3VRNA 3BUXB 3BUWB 4P4EA 1FBVA 3BXMA 4NGQA 3D7GA 2JBJA 2C6CA 2PVVA 3D7FA 4NGMA 3BI1A 4OC3A 4P4JA 4MCRA 2OR4A 4BPWB 3BHXA 2XPLA 4GPLB 4RR2B 4A4BA 1YVHA 4OC0A 3VRPA 3S9NA 2XPNA 2Y1NA 3HPGG 3FECA 3OP0A 3IWWA 3O8ZA 3D7HA 4X3RA 3HPHE 2Y1MA 2B4JC 3F9KC 3SJEA 4NGPA 2OOTA 3RBUA 3PT1A 3OB1B 2XPOA 4NGNA 5BY0A 2UV8G 3U88C 2DLAA 4LQGA 4P45A 4OC5A 5AXIA 1CX8A 1WJTA 4BPUB 4NGRA 4P4IA 2JBKA 2XEGA 3PLFB 4OC4A 3BUNB 2C6PA 3VRRA 2XPPA 2CBLA 3BUMB 3VGOA 5J3XA 4OC1A 4NGSA 3SJFA 4MCQA 2XEFA 3NFQA 2XEJA 5ELYA 4P4DA 3FF3A 2XEIA 3PFVA 4JYWA 4NGTA 5D29A
chains in the Genus database with same CATH topology
2XPNA 3OAKA 3NFQA 2XPLA 1WJTA 3U88C 3HPGG 3HPHE 2N3AB 3O8ZA 2XPOA 2B4JC 1Z9EA 3F9KC 1EO0A 2XPPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XPN A;  3OAK A;  3NFQ A;  2XPL A;  1WJT A;  3U88 C;  3HPG G;  3HPH E;  2N3A B;  3O8Z A;  2XPO A;  2B4J C;  1Z9E A;  3F9K C;  1EO0 A;  2XPP A; 
#chains in the Genus database with same CATH topology
 3BUO B;  4JZ0 A;  3VRO A;  4A4C A;  2CIJ A;  4W9Y A;  3S9M A;  4MCP A;  5HKZ A;  1DE4 C;  3BI0 A;  3ZNI A;  2N3A B;  5F13 A;  1Z9E A;  3KAS A;  3S9L A;  3D7D A;  1B47 A;  5F09 A;  4MCS A;  1Z8L A;  4P4F A;  4BTF A;  3SJX A;  3SJG A;  2PVW A;  1EO0 A;  4BPX B;  3FEE A;  4P4B A;  3VRQ A;  4P44 A;  5HKW A;  4OME A;  2VKZ G;  3FED A;  3HMJ G;  3OAK A;  5HKY A;  3OB2 B;  4OC2 A;  2C6G A;  3VRN A;  3BUX B;  3BUW B;  4P4E A;  1FBV A;  3BXM A;  4NGQ A;  3D7G A;  2JBJ A;  2C6C A;  2PVV A;  3D7F A;  4NGM A;  3BI1 A;  4OC3 A;  4P4J A;  4MCR A;  2OR4 A;  4BPW B;  3BHX A;  2XPL A;  4GPL B;  4RR2 B;  4A4B A;  1YVH A;  4OC0 A;  3VRP A;  3S9N A;  2XPN A;  2Y1N A;  3HPG G;  3FEC A;  3OP0 A;  3IWW A;  3O8Z A;  3D7H A;  4X3R A;  3HPH E;  2Y1M A;  2B4J C;  3F9K C;  3SJE A;  4NGP A;  2OOT A;  3RBU A;  3PT1 A;  3OB1 B;  2XPO A;  4NGN A;  5BY0 A;  2UV8 G;  3U88 C;  2DLA A;  4LQG A;  4P45 A;  4OC5 A;  5AXI A;  1CX8 A;  1WJT A;  4BPU B;  4NGR A;  4P4I A;  2JBK A;  2XEG A;  3PLF B;  4OC4 A;  3BUN B;  2C6P A;  3VRR A;  2XPP A;  2CBL A;  3BUM B;  3VGO A;  5J3X A;  4OC1 A;  4NGS A;  3SJF A;  4MCQ A;  2XEF A;  3NFQ A;  2XEJ A;  5ELY A;  4P4D A;  3FF3 A;  2XEI A;  3PFV A;  4JYW A;  4NGT A;  5D29 A; 
#chains in the Genus database with same CATH homology
 2XPN A;  3OAK A;  3NFQ A;  2XPL A;  1WJT A;  3U88 C;  3HPG G;  3HPH E;  2N3A B;  3O8Z A;  2XPO A;  2B4J C;  1Z9E A;  3F9K C;  1EO0 A;  2XPP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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