2N3AB

Solution structure of ledgf/p75 ibd in complex with pogz peptide (1389-1404)
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
79
structure length
79
Chain Sequence
MDSRLQRIHAEIKNSLKIDNLDVNRCIEALDELASLQVTMQQAQKHTEMITTLKKIRRFKVSQVIMEKSTMLYNKFKNM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Pogo transposable element with ZNF domain
publication title Multiple cellular proteins interact with LEDGF/p75 through a conserved unstructured consensus motif.
pubmed doi rcsb
source organism Homo sapiens
molecule tags Protein binding
total genus 26
structure length 79
sequence length 79
ec nomenclature
pdb deposition date 2015-05-26
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.930.10 Mainly Alpha Up-down Bundle Transcription Elongation Factor S-II; Chain A Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 2n3aB00
2XPOA 2XPNA 2XPPA 1Z9EA 3NFQA 3F9KC 3HPGG 3HPHE 3U88C 1EO0A 3O8ZA 3OAKA 1WJTA 2B4JC 2N3AB 2XPLA
chains in the Genus database with same CATH superfamily
4OC1A 3HPGG 2PVVA 4X3RA 2XEFA 3S9LA 4MCSA 4NGNA 3BUNB 3PFVA 4P4JA 3BUWB 2Y1MA 3VGOA 1YVHA 2XPOA 3BI1A 2XEJA 3VRQA 4NGTA 4MCPA 2DLAA 2OOTA 4BPXB 3RBUA 1DE4C 2UV8G 2CIJA 2C6CA 3VRRA 3D7HA 1WJTA 4RR2B 3BUOB 4BPWB 4P45A 4JYWA 4A4CA 2PVWA 4P4BA 2XEGA 4OMEA 4P4IA 2N3AB 2XPNA 1Z9EA 3BUMB 3NFQA 4A4BA 3SJXA 3O8ZA 1FBVA 4BPUB 4NGRA 3S9NA 2CBLA 2C6GA 4P44A 4OC4A 2C6PA 5ELYA 3F9KC 3FF3A 3IWWA 3VRPA 2XPPA 4OC2A 3KASA 3BXMA 2VKZG 4JZ0A 3PT1A 1CX8A 3OP0A 3VROA 4W9YA 3D7FA 3OB2B 3OAKA 3BI0A 3D7DA 3PLFB 3OB1B 3VRNA 2JBKA 3ZNIA 2Y1NA 2XPLA 2XEIA 5F09A 5HKYA 3HMJG 4NGMA 4MCQA 3SJGA 1Z8LA 4NGSA 4NGPA 4BTFA 4GPLB 5HKZA 3SJFA 1EO0A 3FEEA 2OR4A 5D29A 4P4DA 4P4FA 4OC3A 3SJEA 2JBJA 2B4JC 4OC5A 3BHXA 4NGQA 1B47A 5J3XA 3D7GA 3FECA 5BY0A 4P4EA 4OC0A 3BUXB 4LQGA 3S9MA 4MCRA 5HKWA 5F13A 3HPHE 3U88C 3FEDA 5AXIA
chains in the Genus database with same CATH topology
2XPOA 2XPNA 2XPPA 1Z9EA 3NFQA 3F9KC 3HPGG 3HPHE 3U88C 1EO0A 3O8ZA 3OAKA 1WJTA 2B4JC 2N3AB 2XPLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XPO A;  2XPN A;  2XPP A;  1Z9E A;  3NFQ A;  3F9K C;  3HPG G;  3HPH E;  3U88 C;  1EO0 A;  3O8Z A;  3OAK A;  1WJT A;  2B4J C;  2N3A B;  2XPL A; 
#chains in the Genus database with same CATH topology
 4OC1 A;  3HPG G;  2PVV A;  4X3R A;  2XEF A;  3S9L A;  4MCS A;  4NGN A;  3BUN B;  3PFV A;  4P4J A;  3BUW B;  2Y1M A;  3VGO A;  1YVH A;  2XPO A;  3BI1 A;  2XEJ A;  3VRQ A;  4NGT A;  4MCP A;  2DLA A;  2OOT A;  4BPX B;  3RBU A;  1DE4 C;  2UV8 G;  2CIJ A;  2C6C A;  3VRR A;  3D7H A;  1WJT A;  4RR2 B;  3BUO B;  4BPW B;  4P45 A;  4JYW A;  4A4C A;  2PVW A;  4P4B A;  2XEG A;  4OME A;  4P4I A;  2N3A B;  2XPN A;  1Z9E A;  3BUM B;  3NFQ A;  4A4B A;  3SJX A;  3O8Z A;  1FBV A;  4BPU B;  4NGR A;  3S9N A;  2CBL A;  2C6G A;  4P44 A;  4OC4 A;  2C6P A;  5ELY A;  3F9K C;  3FF3 A;  3IWW A;  3VRP A;  2XPP A;  4OC2 A;  3KAS A;  3BXM A;  2VKZ G;  4JZ0 A;  3PT1 A;  1CX8 A;  3OP0 A;  3VRO A;  4W9Y A;  3D7F A;  3OB2 B;  3OAK A;  3BI0 A;  3D7D A;  3PLF B;  3OB1 B;  3VRN A;  2JBK A;  3ZNI A;  2Y1N A;  2XPL A;  2XEI A;  5F09 A;  5HKY A;  3HMJ G;  4NGM A;  4MCQ A;  3SJG A;  1Z8L A;  4NGS A;  4NGP A;  4BTF A;  4GPL B;  5HKZ A;  3SJF A;  1EO0 A;  3FEE A;  2OR4 A;  5D29 A;  4P4D A;  4P4F A;  4OC3 A;  3SJE A;  2JBJ A;  2B4J C;  4OC5 A;  3BHX A;  4NGQ A;  1B47 A;  5J3X A;  3D7G A;  3FEC A;  5BY0 A;  4P4E A;  4OC0 A;  3BUX B;  4LQG A;  3S9M A;  4MCR A;  5HKW A;  5F13 A;  3HPH E;  3U88 C;  3FED A;  5AXI A; 
#chains in the Genus database with same CATH homology
 2XPO A;  2XPN A;  2XPP A;  1Z9E A;  3NFQ A;  3F9K C;  3HPG G;  3HPH E;  3U88 C;  1EO0 A;  3O8Z A;  3OAK A;  1WJT A;  2B4J C;  2N3A B;  2XPL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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