2N3AB

Solution structure of ledgf/p75 ibd in complex with pogz peptide (1389-1404)
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
79
structure length
79
Chain Sequence
MDSRLQRIHAEIKNSLKIDNLDVNRCIEALDELASLQVTMQQAQKHTEMITTLKKIRRFKVSQVIMEKSTMLYNKFKNM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Multiple cellular proteins interact with LEDGF/p75 through a conserved unstructured consensus motif.
pubmed doi rcsb
molecule keywords Pogo transposable element with ZNF domain
molecule tags Protein binding
source organism Homo sapiens
total genus 26
structure length 79
sequence length 79
ec nomenclature
pdb deposition date 2015-05-26
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.930.10 Mainly Alpha Up-down Bundle Transcription Elongation Factor S-II; Chain A Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 2n3aB00
3F9KC 1WJTA 3O8ZA 2XPOA 2N3AB 2XPPA 3HPGG 3OAKA 2XPLA 1Z9EA 3U88C 1EO0A 2XPNA 3NFQA 3HPHE 2B4JC
chains in the Genus database with same CATH superfamily
5ELYA 3VGOA 2OOTA 1EO0A 3VRNA 3FF3A 3BXMA 5HKYA 4OC5A 5F13A 4MCQA 2XPNA 4OC4A 4P4BA 3BUXB 2UV8G 3FEDA 2N3AB 3BI1A 3HPGG 3FEEA 4W9YA 2Y1NA 3D7HA 3PLFB 4NGPA 3VRPA 4NGRA 1Z9EA 4OMEA 3BUMB 2XEIA 4P4FA 4NGTA 4GPLB 2XPPA 3OAKA 5D29A 5BY0A 4P45A 4BPWB 3F9KC 3BI0A 3BUOB 3SJFA 3D7FA 1YVHA 3BUNB 3KASA 3OB2B 3BHXA 3S9MA 4MCPA 5J3XA 1FBVA 3VRRA 2CIJA 1WJTA 3O8ZA 3PT1A 3IWWA 2C6PA 2XEJA 4OC3A 2OR4A 4JYWA 5AXIA 4P44A 3OP0A 3S9LA 2C6CA 4RR2B 2Y1MA 4NGNA 3U88C 3S9NA 4NGMA 1Z8LA 4P4IA 2DLAA 4MCSA 4P4DA 3ZNIA 1DE4C 4A4BA 4OC2A 4NGSA 3HPHE 3PFVA 3SJGA 3FECA 4LQGA 1CX8A 2B4JC 4P4JA 2PVVA 4OC0A 3D7GA 4X3RA 3D7DA 4A4CA 4BPUB 3HMJG 2XEGA 3NFQA 2VKZG 4JZ0A 2JBJA 3SJEA 5F09A 2C6GA 5HKZA 1B47A 3BUWB 4NGQA 2XEFA 3VRQA 2XPOA 3SJXA 4OC1A 2XPLA 3VROA 2CBLA 4MCRA 5HKWA 2PVWA 4BTFA 2JBKA 4P4EA 3RBUA 4BPXB 3OB1B
chains in the Genus database with same CATH topology
3F9KC 1WJTA 3O8ZA 2XPOA 2N3AB 2XPPA 3HPGG 3OAKA 2XPLA 1Z9EA 3U88C 1EO0A 2XPNA 3NFQA 3HPHE 2B4JC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3F9K C;  1WJT A;  3O8Z A;  2XPO A;  2N3A B;  2XPP A;  3HPG G;  3OAK A;  2XPL A;  1Z9E A;  3U88 C;  1EO0 A;  2XPN A;  3NFQ A;  3HPH E;  2B4J C; 
#chains in the Genus database with same CATH topology
 5ELY A;  3VGO A;  2OOT A;  1EO0 A;  3VRN A;  3FF3 A;  3BXM A;  5HKY A;  4OC5 A;  5F13 A;  4MCQ A;  2XPN A;  4OC4 A;  4P4B A;  3BUX B;  2UV8 G;  3FED A;  2N3A B;  3BI1 A;  3HPG G;  3FEE A;  4W9Y A;  2Y1N A;  3D7H A;  3PLF B;  4NGP A;  3VRP A;  4NGR A;  1Z9E A;  4OME A;  3BUM B;  2XEI A;  4P4F A;  4NGT A;  4GPL B;  2XPP A;  3OAK A;  5D29 A;  5BY0 A;  4P45 A;  4BPW B;  3F9K C;  3BI0 A;  3BUO B;  3SJF A;  3D7F A;  1YVH A;  3BUN B;  3KAS A;  3OB2 B;  3BHX A;  3S9M A;  4MCP A;  5J3X A;  1FBV A;  3VRR A;  2CIJ A;  1WJT A;  3O8Z A;  3PT1 A;  3IWW A;  2C6P A;  2XEJ A;  4OC3 A;  2OR4 A;  4JYW A;  5AXI A;  4P44 A;  3OP0 A;  3S9L A;  2C6C A;  4RR2 B;  2Y1M A;  4NGN A;  3U88 C;  3S9N A;  4NGM A;  1Z8L A;  4P4I A;  2DLA A;  4MCS A;  4P4D A;  3ZNI A;  1DE4 C;  4A4B A;  4OC2 A;  4NGS A;  3HPH E;  3PFV A;  3SJG A;  3FEC A;  4LQG A;  1CX8 A;  2B4J C;  4P4J A;  2PVV A;  4OC0 A;  3D7G A;  4X3R A;  3D7D A;  4A4C A;  4BPU B;  3HMJ G;  2XEG A;  3NFQ A;  2VKZ G;  4JZ0 A;  2JBJ A;  3SJE A;  5F09 A;  2C6G A;  5HKZ A;  1B47 A;  3BUW B;  4NGQ A;  2XEF A;  3VRQ A;  2XPO A;  3SJX A;  4OC1 A;  2XPL A;  3VRO A;  2CBL A;  4MCR A;  5HKW A;  2PVW A;  4BTF A;  2JBK A;  4P4E A;  3RBU A;  4BPX B;  3OB1 B; 
#chains in the Genus database with same CATH homology
 3F9K C;  1WJT A;  3O8Z A;  2XPO A;  2N3A B;  2XPP A;  3HPG G;  3OAK A;  2XPL A;  1Z9E A;  3U88 C;  1EO0 A;  2XPN A;  3NFQ A;  3HPH E;  2B4J C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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