4BPWB

Crystal structure of human primase bound to utp
Total Genus 63
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
63
sequence length
243
structure length
219
Chain Sequence
b'LRLAGYLQPPSENISLIEFENLAIDRVKLLKSVENLGVSYVKGTEQYQSKLESELRKLKFSPRRRDHISHFILRLAYCQSEELRRWFIQQEMDLLRFRFSIPKDKIQDFLKDSQLQFEAISDEEKTLREQEIVASSPSLSGLKLGFESIYKIPFADALDLFRGRKVYLEDGFAYVPLKDIVAIILNEFRAKLSKALALTARSLPAVQSDERLQPLLNHL'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords DNA PRIMASE SMALL SUBUNIT
publication title Structures of Human Primase Reveal Design of Nucleotide Elongation Site and Mode of Pol Alpha Tethering
pubmed doi rcsb
source organism Homo sapiens
molecule tags Transferase
total genus 63
structure length 219
sequence length 243
chains with identical sequence D
ec nomenclature ec 2.7.7.-:
pdb deposition date 2013-05-28
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.930.80 Mainly Alpha Up-down Bundle Transcription Elongation Factor S-II; Chain A Transcription Elongation Factor S-II; Chain A 4bpwB00
4RR2B 4BPXB 4BPWB 4BPUB
chains in the Genus database with same CATH superfamily
4BPXB 2Y1MA 3O8ZA 1YVHA 2Y1NA 5F09A 4OC0A 3S9LA 2PVWA 2N3AB 5HKZA 2VKZG 3NFQA 4OC5A 3D7DA 4OC2A 4P45A 4P4FA 3SJXA 4JYWA 1FBVA 2JBJA 3BXMA 2C6GA 4A4CA 2UV8G 3BUWB 4P44A 4BPUB 2DLAA 3F9KC 1EO0A 4P4DA 4MCPA 3VROA 3VRRA 3VRNA 1Z8LA 3VGOA 3HPGG 2XEFA 5D29A 4A4BA 4MCQA 2XPOA 2B4JC 2C6CA 2C6PA 1B47A 2CIJA 3OB2B 3BI0A 4OC1A 4P4BA 3SJGA 3FF3A 2XEIA 3PT1A 4NGTA 3KASA 3D7GA 3FEEA 3PLFB 2XEGA 3PFVA 3D7FA 1CX8A 2OR4A 3S9MA 3FEDA 3IWWA 4P4EA 4MCSA 4OC3A 4NGSA 3FECA 5F13A 2CBLA 2XPPA 4BPWB 2OOTA 5ELYA 3HMJG 4OMEA 5AXIA 3OAKA 4W9YA 3RBUA 3BHXA 4BTFA 4NGMA 3SJEA 3BUNB 1DE4C 5HKYA 3BI1A 4P4JA 4NGQA 4OC4A 4NGPA 2XPLA 2XEJA 3S9NA 3HPHE 3ZNIA 2JBKA 3BUOB 3VRQA 4NGRA 4X3RA 2XPNA 3BUXB 3OB1B 2PVVA 4GPLB 5J3XA 1WJTA 4P4IA 3OP0A 5BY0A 3VRPA 4MCRA 3U88C 5HKWA 1Z9EA 3BUMB 3SJFA 3D7HA 4NGNA 4LQGA 4RR2B 4JZ0A
chains in the Genus database with same CATH topology
4BPXB 5BY0A 5F13A 2DLAA 4BPUB 2VKZG 4BPWB 4RR2B 3HMJG 2UV8G 3PT1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4RR2 B;  4BPX B;  4BPW B;  4BPU B; 
#chains in the Genus database with same CATH topology
 4BPX B;  2Y1M A;  3O8Z A;  1YVH A;  2Y1N A;  5F09 A;  4OC0 A;  3S9L A;  2PVW A;  2N3A B;  5HKZ A;  2VKZ G;  3NFQ A;  4OC5 A;  3D7D A;  4OC2 A;  4P45 A;  4P4F A;  3SJX A;  4JYW A;  1FBV A;  2JBJ A;  3BXM A;  2C6G A;  4A4C A;  2UV8 G;  3BUW B;  4P44 A;  4BPU B;  2DLA A;  3F9K C;  1EO0 A;  4P4D A;  4MCP A;  3VRO A;  3VRR A;  3VRN A;  1Z8L A;  3VGO A;  3HPG G;  2XEF A;  5D29 A;  4A4B A;  4MCQ A;  2XPO A;  2B4J C;  2C6C A;  2C6P A;  1B47 A;  2CIJ A;  3OB2 B;  3BI0 A;  4OC1 A;  4P4B A;  3SJG A;  3FF3 A;  2XEI A;  3PT1 A;  4NGT A;  3KAS A;  3D7G A;  3FEE A;  3PLF B;  2XEG A;  3PFV A;  3D7F A;  1CX8 A;  2OR4 A;  3S9M A;  3FED A;  3IWW A;  4P4E A;  4MCS A;  4OC3 A;  4NGS A;  3FEC A;  5F13 A;  2CBL A;  2XPP A;  4BPW B;  2OOT A;  5ELY A;  3HMJ G;  4OME A;  5AXI A;  3OAK A;  4W9Y A;  3RBU A;  3BHX A;  4BTF A;  4NGM A;  3SJE A;  3BUN B;  1DE4 C;  5HKY A;  3BI1 A;  4P4J A;  4NGQ A;  4OC4 A;  4NGP A;  2XPL A;  2XEJ A;  3S9N A;  3HPH E;  3ZNI A;  2JBK A;  3BUO B;  3VRQ A;  4NGR A;  4X3R A;  2XPN A;  3BUX B;  3OB1 B;  2PVV A;  4GPL B;  5J3X A;  1WJT A;  4P4I A;  3OP0 A;  5BY0 A;  3VRP A;  4MCR A;  3U88 C;  5HKW A;  1Z9E A;  3BUM B;  3SJF A;  3D7H A;  4NGN A;  4LQG A;  4RR2 B;  4JZ0 A; 
#chains in the Genus database with same CATH homology
 4BPX B;  5BY0 A;  5F13 A;  2DLA A;  4BPU B;  2VKZ G;  4BPW B;  4RR2 B;  3HMJ G;  2UV8 G;  3PT1 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...