4BPWB

Crystal structure of human primase bound to utp
Total Genus 63
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
63
sequence length
243
structure length
219
Chain Sequence
LRLAGYLQPPSENISLIEFENLAIDRVKLLKSVENLGVSYVKGTEQYQSKLESELRKLKFSPRRRDHISHFILRLAYCQSEELRRWFIQQEMDLLRFRFSIPKDKIQDFLKDSQLQFEAISDEEKTLREQEIVASSPSLSGLKLGFESIYKIPFADALDLFRGRKVYLEDGFAYVPLKDIVAIILNEFRAKLSKALALTARSLPAVQSDERLQPLLNHL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords DNA PRIMASE SMALL SUBUNIT
publication title Structures of Human Primase Reveal Design of Nucleotide Elongation Site and Mode of Pol Alpha Tethering
pubmed doi rcsb
source organism Homo sapiens
total genus 63
structure length 219
sequence length 243
chains with identical sequence D
ec nomenclature ec 2.7.7.-:
pdb deposition date 2013-05-28
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.930.80 Mainly Alpha Up-down Bundle Transcription Elongation Factor S-II; Chain A Transcription Elongation Factor S-II; Chain A 4bpwB00
4BPUB 4RR2B 4BPXB 4BPWB
chains in the Genus database with same CATH superfamily
3O8ZA 2PVVA 2B4JC 2DLAA 4NGMA 3FEEA 3BUMB 4NGTA 2C6PA 3BUNB 2XPPA 3VRPA 1FBVA 2N3AB 3SJGA 3OAKA 2OOTA 4BTFA 5HKWA 2CIJA 1B47A 3D7HA 4BPUB 2C6GA 1WJTA 1CX8A 2XEIA 3S9NA 4NGRA 3SJEA 4A4CA 4JYWA 5ELYA 4OC2A 1YVHA 5F09A 3OP0A 2XPOA 3SJXA 4MCSA 4P4IA 3SJFA 2UV8G 3VRQA 3BUXB 2XPLA 2JBKA 3D7FA 4A4BA 3BUOB 3HPGG 3KASA 4P44A 4BPWB 2VKZG 2XEGA 3BHXA 2PVWA 4OMEA 4MCPA 5HKYA 4X3RA 4RR2B 2Y1MA 1EO0A 1Z9EA 4OC1A 3VGOA 3ZNIA 3OB2B 3VROA 4P4FA 2JBJA 3BUWB 2XPNA 4BPXB 4NGNA 4P4BA 3PFVA 4NGQA 3PLFB 3OB1B 4P4DA 3PT1A 4NGSA 4P4EA 1Z8LA 2C6CA 1DE4C 2CBLA 3FECA 3S9LA 3HPHE 3D7DA 5AXIA 3FF3A 3U88C 3NFQA 4GPLB 4OC3A 3D7GA 5HKZA 5BY0A 4W9YA 3HMJG 4P45A 4MCQA 3S9MA 4LQGA 4OC5A 3F9KC 4P4JA 3BI0A 3BI1A 2XEFA 2OR4A 3BXMA 4JZ0A 3RBUA 3FEDA 5F13A 5J3XA 4OC0A 3VRNA 2XEJA 3VRRA 4OC4A 4MCRA 4NGPA 2Y1NA 5D29A 3IWWA
chains in the Genus database with same CATH topology
4BPWB 2DLAA 2UV8G 2VKZG 3HMJG 4BPUB 5BY0A 4BPXB 4RR2B 3PT1A 5F13A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4BPU B;  4RR2 B;  4BPX B;  4BPW B; 
#chains in the Genus database with same CATH topology
 3O8Z A;  2PVV A;  2B4J C;  2DLA A;  4NGM A;  3FEE A;  3BUM B;  4NGT A;  2C6P A;  3BUN B;  2XPP A;  3VRP A;  1FBV A;  2N3A B;  3SJG A;  3OAK A;  2OOT A;  4BTF A;  5HKW A;  2CIJ A;  1B47 A;  3D7H A;  4BPU B;  2C6G A;  1WJT A;  1CX8 A;  2XEI A;  3S9N A;  4NGR A;  3SJE A;  4A4C A;  4JYW A;  5ELY A;  4OC2 A;  1YVH A;  5F09 A;  3OP0 A;  2XPO A;  3SJX A;  4MCS A;  4P4I A;  3SJF A;  2UV8 G;  3VRQ A;  3BUX B;  2XPL A;  2JBK A;  3D7F A;  4A4B A;  3BUO B;  3HPG G;  3KAS A;  4P44 A;  4BPW B;  2VKZ G;  2XEG A;  3BHX A;  2PVW A;  4OME A;  4MCP A;  5HKY A;  4X3R A;  4RR2 B;  2Y1M A;  1EO0 A;  1Z9E A;  4OC1 A;  3VGO A;  3ZNI A;  3OB2 B;  3VRO A;  4P4F A;  2JBJ A;  3BUW B;  2XPN A;  4BPX B;  4NGN A;  4P4B A;  3PFV A;  4NGQ A;  3PLF B;  3OB1 B;  4P4D A;  3PT1 A;  4NGS A;  4P4E A;  1Z8L A;  2C6C A;  1DE4 C;  2CBL A;  3FEC A;  3S9L A;  3HPH E;  3D7D A;  5AXI A;  3FF3 A;  3U88 C;  3NFQ A;  4GPL B;  4OC3 A;  3D7G A;  5HKZ A;  5BY0 A;  4W9Y A;  3HMJ G;  4P45 A;  4MCQ A;  3S9M A;  4LQG A;  4OC5 A;  3F9K C;  4P4J A;  3BI0 A;  3BI1 A;  2XEF A;  2OR4 A;  3BXM A;  4JZ0 A;  3RBU A;  3FED A;  5F13 A;  5J3X A;  4OC0 A;  3VRN A;  2XEJ A;  3VRR A;  4OC4 A;  4MCR A;  4NGP A;  2Y1N A;  5D29 A;  3IWW A; 
#chains in the Genus database with same CATH homology
 4BPW B;  2DLA A;  2UV8 G;  2VKZ G;  3HMJ G;  4BPU B;  5BY0 A;  4BPX B;  4RR2 B;  3PT1 A;  5F13 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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