5F13A

Structure of mn bound duf89 from saccharomyces cerevisiae
Total Genus 170
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
170
sequence length
466
structure length
445
Chain Sequence
IPGRFMTIDKGTFGEYTASTRWPIIIQNAIDDLSKHQETEKSNGTKFEQGEVIKKELKEFRQEIIDRVPLRPFTEEEIKIANVPLSFNEYLKKHPEVNWGAVEWLFSEVYLYRRVNVLFQRQCEWAKFDIFNRLKQSTFESSFYGVVELALRYENLLPQLREMKNEIDDILKVLFKEFIEISLWGSIQGAKARAASESKIVVNDTEKAWEVLTKARADANSREIRVDFVLDNSGFELYADLMLAAFLLQSGLATKCIFHAKDIPYMVSDVMLKDFDILVHDLRDREFFPSGEPSTKESRALDLFAGEMEKFVSSGKIEFREDSFWTTELDYWNLDANETKYHGSILHKDLQKSNLVIFKGDLNYRKLTGDRKWPRTTKWETAIGPLATNGITSLSLRTCKADVQVALPEGLDAKLSQEWEKENPGRGSWWCCSGKWAVICFCSGI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Protein-glutamate O-methyltransferase
publication title A family of metal-dependent phosphatases implicated in metabolite damage-control.
pubmed doi rcsb
source organism Saccharomyces cerevisiae (strain atcc 204508 / s288c)
total genus 170
structure length 445
sequence length 466
chains with identical sequence B, C
ec nomenclature ec 2.1.1.-:
pdb deposition date 2015-11-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01937 DUF89 Protein of unknown function DUF89
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.930.60 Mainly Alpha Up-down Bundle Transcription Elongation Factor S-II; Chain A Transcription Elongation Factor S-II; Chain A 5f13A01
5BY0A 3PT1A 5F13A
chains in the Genus database with same CATH superfamily
2C6CA 2CIJA 4P44A 4LQGA 1FBVA 4MCPA 3O8ZA 3PFVA 3OB1B 5HKYA 2CBLA 1YVHA 3VRPA 4P45A 5ELYA 2PVVA 5F13A 3D7HA 3SJFA 2UV8G 3VRRA 3FF3A 3OP0A 3SJEA 3PLFB 3KASA 4NGRA 4P4FA 3BUXB 3BUMB 1CX8A 2XPOA 4GPLB 1WJTA 2OR4A 4OC1A 5F09A 3S9NA 2PVWA 4MCRA 4MCQA 4P4JA 1Z8LA 3NFQA 2C6PA 4NGMA 4OC5A 4MCSA 4P4BA 5HKZA 3OB2B 3HPHE 4OC4A 4P4DA 2Y1NA 1B47A 3SJXA 3U88C 1Z9EA 3FECA 4P4IA 3BI0A 4BPUB 3BHXA 3PT1A 4NGQA 2VKZG 4BPXB 2JBJA 4NGPA 3BUOB 3D7GA 3HPGG 5HKWA 3ZNIA 2DLAA 3BXMA 2Y1MA 2XPLA 2XPNA 4OMEA 3HMJG 4BTFA 3VROA 3D7FA 2N3AB 3RBUA 4BPWB 1DE4C 2XEFA 3OAKA 2JBKA 1EO0A 4RR2B 5J3XA 4W9YA 3FEDA 5AXIA 4A4BA 3VGOA 3BUNB 5BY0A 3S9LA 4NGSA 4NGNA 4X3RA 3F9KC 2B4JC 2OOTA 3FEEA 3VRQA 5D29A 2C6GA 3S9MA 3VRNA 4OC0A 3D7DA 4NGTA 2XEGA 3BI1A 4OC2A 4OC3A 3BUWB 3IWWA 3SJGA 4A4CA 2XPPA 4P4EA 4JZ0A 2XEIA 2XEJA 4JYWA
chains in the Genus database with same CATH topology
4BPUB 2UV8G 3PT1A 4BPWB 3HMJG 2VKZG 4BPXB 2DLAA 5BY0A 4RR2B 5F13A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5BY0 A;  3PT1 A;  5F13 A; 
#chains in the Genus database with same CATH topology
 2C6C A;  2CIJ A;  4P44 A;  4LQG A;  1FBV A;  4MCP A;  3O8Z A;  3PFV A;  3OB1 B;  5HKY A;  2CBL A;  1YVH A;  3VRP A;  4P45 A;  5ELY A;  2PVV A;  5F13 A;  3D7H A;  3SJF A;  2UV8 G;  3VRR A;  3FF3 A;  3OP0 A;  3SJE A;  3PLF B;  3KAS A;  4NGR A;  4P4F A;  3BUX B;  3BUM B;  1CX8 A;  2XPO A;  4GPL B;  1WJT A;  2OR4 A;  4OC1 A;  5F09 A;  3S9N A;  2PVW A;  4MCR A;  4MCQ A;  4P4J A;  1Z8L A;  3NFQ A;  2C6P A;  4NGM A;  4OC5 A;  4MCS A;  4P4B A;  5HKZ A;  3OB2 B;  3HPH E;  4OC4 A;  4P4D A;  2Y1N A;  1B47 A;  3SJX A;  3U88 C;  1Z9E A;  3FEC A;  4P4I A;  3BI0 A;  4BPU B;  3BHX A;  3PT1 A;  4NGQ A;  2VKZ G;  4BPX B;  2JBJ A;  4NGP A;  3BUO B;  3D7G A;  3HPG G;  5HKW A;  3ZNI A;  2DLA A;  3BXM A;  2Y1M A;  2XPL A;  2XPN A;  4OME A;  3HMJ G;  4BTF A;  3VRO A;  3D7F A;  2N3A B;  3RBU A;  4BPW B;  1DE4 C;  2XEF A;  3OAK A;  2JBK A;  1EO0 A;  4RR2 B;  5J3X A;  4W9Y A;  3FED A;  5AXI A;  4A4B A;  3VGO A;  3BUN B;  5BY0 A;  3S9L A;  4NGS A;  4NGN A;  4X3R A;  3F9K C;  2B4J C;  2OOT A;  3FEE A;  3VRQ A;  5D29 A;  2C6G A;  3S9M A;  3VRN A;  4OC0 A;  3D7D A;  4NGT A;  2XEG A;  3BI1 A;  4OC2 A;  4OC3 A;  3BUW B;  3IWW A;  3SJG A;  4A4C A;  2XPP A;  4P4E A;  4JZ0 A;  2XEI A;  2XEJ A;  4JYW A; 
#chains in the Genus database with same CATH homology
 4BPU B;  2UV8 G;  3PT1 A;  4BPW B;  3HMJ G;  2VKZ G;  4BPX B;  2DLA A;  5BY0 A;  4RR2 B;  5F13 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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