5F13A

Structure of mn bound duf89 from saccharomyces cerevisiae
Total Genus 170
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
170
sequence length
466
structure length
445
Chain Sequence
IPGRFMTIDKGTFGEYTASTRWPIIIQNAIDDLSKHQETEKSNGTKFEQGEVIKKELKEFRQEIIDRVPLRPFTEEEIKIANVPLSFNEYLKKHPEVNWGAVEWLFSEVYLYRRVNVLFQRQCEWAKFDIFNRLKQSTFESSFYGVVELALRYENLLPQLREMKNEIDDILKVLFKEFIEISLWGSIQGAKARAASESKIVVNDTEKAWEVLTKARADANSREIRVDFVLDNSGFELYADLMLAAFLLQSGLATKCIFHAKDIPYMVSDVMLKDFDILVHDLRDREFFPSGEPSTKESRALDLFAGEMEKFVSSGKIEFREDSFWTTELDYWNLDANETKYHGSILHKDLQKSNLVIFKGDLNYRKLTGDRKWPRTTKWETAIGPLATNGITSLSLRTCKADVQVALPEGLDAKLSQEWEKENPGRGSWWCCSGKWAVICFCSGI
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords Protein-glutamate O-methyltransferase
publication title A family of metal-dependent phosphatases implicated in metabolite damage-control.
pubmed doi rcsb
source organism Saccharomyces cerevisiae (strain atcc 204508 / s288c)
molecule tags Transferase
total genus 170
structure length 445
sequence length 466
chains with identical sequence B, C
ec nomenclature ec 2.1.1.-:
pdb deposition date 2015-11-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01937 DUF89 Protein of unknown function DUF89
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.930.60 Mainly Alpha Up-down Bundle Transcription Elongation Factor S-II; Chain A Transcription Elongation Factor S-II; Chain A 5f13A01
3PT1A 5F13A 5BY0A
chains in the Genus database with same CATH superfamily
5ELYA 4NGQA 3VROA 4OC0A 5F09A 2C6PA 2PVVA 2N3AB 3BUWB 3PT1A 3OB1B 3S9MA 3F9KC 3FEEA 3NFQA 4BTFA 4OC4A 4MCSA 4BPXB 4BPUB 5J3XA 3SJEA 2DLAA 2C6CA 3RBUA 4RR2B 2OOTA 2Y1MA 4A4CA 1CX8A 4P4IA 4P4BA 1WJTA 2XPOA 3BUNB 5AXIA 3ZNIA 3BHXA 1YVHA 3U88C 3VRQA 3O8ZA 2XEIA 2XEGA 3D7GA 2PVWA 3BXMA 5HKYA 1EO0A 3FECA 5D29A 3BUMB 3OB2B 3VRPA 2C6GA 4OC2A 4X3RA 1B47A 4P4FA 4NGSA 4JZ0A 3FF3A 3VRRA 3SJGA 4MCPA 1FBVA 4P4DA 2XEFA 4P45A 4MCRA 2CBLA 4OC1A 3D7HA 4GPLB 4P44A 4NGNA 1Z8LA 5BY0A 3SJXA 3D7DA 3KASA 3SJFA 3PLFB 2CIJA 4P4EA 2OR4A 3VRNA 4MCQA 3OAKA 2XPPA 2XEJA 2B4JC 2JBKA 4NGRA 4A4BA 1DE4C 3HMJG 4NGTA 3IWWA 1Z9EA 4NGPA 2Y1NA 4NGMA 2XPNA 4OC3A 2UV8G 4JYWA 3BI0A 5HKZA 3HPGG 3PFVA 3S9LA 3D7FA 3BUOB 3S9NA 4OC5A 4BPWB 3BUXB 2XPLA 5HKWA 3FEDA 3HPHE 3VGOA 2JBJA 4OMEA 4LQGA 4P4JA 4W9YA 2VKZG 3OP0A 3BI1A 5F13A
chains in the Genus database with same CATH topology
4RR2B 3HMJG 2VKZG 4BPWB 5BY0A 4BPXB 2UV8G 4BPUB 3PT1A 2DLAA 5F13A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3PT1 A;  5F13 A;  5BY0 A; 
#chains in the Genus database with same CATH topology
 5ELY A;  4NGQ A;  3VRO A;  4OC0 A;  5F09 A;  2C6P A;  2PVV A;  2N3A B;  3BUW B;  3PT1 A;  3OB1 B;  3S9M A;  3F9K C;  3FEE A;  3NFQ A;  4BTF A;  4OC4 A;  4MCS A;  4BPX B;  4BPU B;  5J3X A;  3SJE A;  2DLA A;  2C6C A;  3RBU A;  4RR2 B;  2OOT A;  2Y1M A;  4A4C A;  1CX8 A;  4P4I A;  4P4B A;  1WJT A;  2XPO A;  3BUN B;  5AXI A;  3ZNI A;  3BHX A;  1YVH A;  3U88 C;  3VRQ A;  3O8Z A;  2XEI A;  2XEG A;  3D7G A;  2PVW A;  3BXM A;  5HKY A;  1EO0 A;  3FEC A;  5D29 A;  3BUM B;  3OB2 B;  3VRP A;  2C6G A;  4OC2 A;  4X3R A;  1B47 A;  4P4F A;  4NGS A;  4JZ0 A;  3FF3 A;  3VRR A;  3SJG A;  4MCP A;  1FBV A;  4P4D A;  2XEF A;  4P45 A;  4MCR A;  2CBL A;  4OC1 A;  3D7H A;  4GPL B;  4P44 A;  4NGN A;  1Z8L A;  5BY0 A;  3SJX A;  3D7D A;  3KAS A;  3SJF A;  3PLF B;  2CIJ A;  4P4E A;  2OR4 A;  3VRN A;  4MCQ A;  3OAK A;  2XPP A;  2XEJ A;  2B4J C;  2JBK A;  4NGR A;  4A4B A;  1DE4 C;  3HMJ G;  4NGT A;  3IWW A;  1Z9E A;  4NGP A;  2Y1N A;  4NGM A;  2XPN A;  4OC3 A;  2UV8 G;  4JYW A;  3BI0 A;  5HKZ A;  3HPG G;  3PFV A;  3S9L A;  3D7F A;  3BUO B;  3S9N A;  4OC5 A;  4BPW B;  3BUX B;  2XPL A;  5HKW A;  3FED A;  3HPH E;  3VGO A;  2JBJ A;  4OME A;  4LQG A;  4P4J A;  4W9Y A;  2VKZ G;  3OP0 A;  3BI1 A;  5F13 A; 
#chains in the Genus database with same CATH homology
 4RR2 B;  3HMJ G;  2VKZ G;  4BPW B;  5BY0 A;  4BPX B;  2UV8 G;  4BPU B;  3PT1 A;  2DLA A;  5F13 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...