5F13A

Structure of mn bound duf89 from saccharomyces cerevisiae
Total Genus 170
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
170
sequence length
466
structure length
445
Chain Sequence
IPGRFMTIDKGTFGEYTASTRWPIIIQNAIDDLSKHQETEKSNGTKFEQGEVIKKELKEFRQEIIDRVPLRPFTEEEIKIANVPLSFNEYLKKHPEVNWGAVEWLFSEVYLYRRVNVLFQRQCEWAKFDIFNRLKQSTFESSFYGVVELALRYENLLPQLREMKNEIDDILKVLFKEFIEISLWGSIQGAKARAASESKIVVNDTEKAWEVLTKARADANSREIRVDFVLDNSGFELYADLMLAAFLLQSGLATKCIFHAKDIPYMVSDVMLKDFDILVHDLRDREFFPSGEPSTKESRALDLFAGEMEKFVSSGKIEFREDSFWTTELDYWNLDANETKYHGSILHKDLQKSNLVIFKGDLNYRKLTGDRKWPRTTKWETAIGPLATNGITSLSLRTCKADVQVALPEGLDAKLSQEWEKENPGRGSWWCCSGKWAVICFCSGI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title A family of metal-dependent phosphatases implicated in metabolite damage-control.
pubmed doi rcsb
source organism Saccharomyces cerevisiae (strain atcc 204508 / s288c)
molecule tags Transferase
molecule keywords Protein-glutamate O-methyltransferase
total genus 170
structure length 445
sequence length 466
chains with identical sequence B, C
ec nomenclature ec 2.1.1.-:
pdb deposition date 2015-11-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01937 DUF89 Protein of unknown function DUF89
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.930.60 Mainly Alpha Up-down Bundle Transcription Elongation Factor S-II; Chain A Transcription Elongation Factor S-II; Chain A 5f13A01
5F13A 5BY0A 3PT1A
chains in the Genus database with same CATH superfamily
2XEJA 2JBKA 5F13A 4P4FA 3VROA 3SJEA 3ZNIA 3BUXB 4MCQA 4A4CA 3D7GA 3IWWA 4OMEA 4P44A 4P4BA 5J3XA 4X3RA 2C6CA 3BI1A 3PLFB 4GPLB 4P4DA 5HKYA 2OOTA 2VKZG 1FBVA 4NGRA 2XEFA 3BUOB 3VRNA 2CBLA 3PFVA 3O8ZA 4OC2A 3D7HA 4MCRA 3OB2B 4OC3A 4P4JA 3S9MA 3VRRA 2Y1NA 3S9LA 1EO0A 5HKWA 2XEIA 2N3AB 1Z9EA 2XPNA 4MCSA 4P45A 4W9YA 3BHXA 4OC1A 3FEEA 2XPOA 3SJGA 2C6PA 4BPWB 3OP0A 3BUMB 2XPPA 1DE4C 2JBJA 4RR2B 4P4EA 4OC0A 3D7DA 4MCPA 3NFQA 4BTFA 4LQGA 4NGPA 5HKZA 5D29A 3HPGG 1YVHA 2XPLA 3VRQA 3RBUA 4NGTA 5AXIA 4NGMA 3VGOA 3SJXA 3FECA 5F09A 2DLAA 3U88C 3HPHE 2UV8G 1CX8A 1Z8LA 4JZ0A 2XEGA 4OC5A 3BXMA 3VRPA 1WJTA 3FF3A 3OAKA 5BY0A 3OB1B 2Y1MA 2PVVA 3F9KC 3KASA 3SJFA 1B47A 4BPXB 3PT1A 4P4IA 4A4BA 3HMJG 2B4JC 5ELYA 3D7FA 4JYWA 3BUNB 2CIJA 3FEDA 2C6GA 4NGSA 2PVWA 2OR4A 3BI0A 4NGQA 4OC4A 4BPUB 3BUWB 4NGNA 3S9NA
chains in the Genus database with same CATH topology
3HMJG 2DLAA 2UV8G 4BPXB 4BPUB 4RR2B 3PT1A 5F13A 2VKZG 5BY0A 4BPWB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5F13 A;  5BY0 A;  3PT1 A; 
#chains in the Genus database with same CATH topology
 2XEJ A;  2JBK A;  5F13 A;  4P4F A;  3VRO A;  3SJE A;  3ZNI A;  3BUX B;  4MCQ A;  4A4C A;  3D7G A;  3IWW A;  4OME A;  4P44 A;  4P4B A;  5J3X A;  4X3R A;  2C6C A;  3BI1 A;  3PLF B;  4GPL B;  4P4D A;  5HKY A;  2OOT A;  2VKZ G;  1FBV A;  4NGR A;  2XEF A;  3BUO B;  3VRN A;  2CBL A;  3PFV A;  3O8Z A;  4OC2 A;  3D7H A;  4MCR A;  3OB2 B;  4OC3 A;  4P4J A;  3S9M A;  3VRR A;  2Y1N A;  3S9L A;  1EO0 A;  5HKW A;  2XEI A;  2N3A B;  1Z9E A;  2XPN A;  4MCS A;  4P45 A;  4W9Y A;  3BHX A;  4OC1 A;  3FEE A;  2XPO A;  3SJG A;  2C6P A;  4BPW B;  3OP0 A;  3BUM B;  2XPP A;  1DE4 C;  2JBJ A;  4RR2 B;  4P4E A;  4OC0 A;  3D7D A;  4MCP A;  3NFQ A;  4BTF A;  4LQG A;  4NGP A;  5HKZ A;  5D29 A;  3HPG G;  1YVH A;  2XPL A;  3VRQ A;  3RBU A;  4NGT A;  5AXI A;  4NGM A;  3VGO A;  3SJX A;  3FEC A;  5F09 A;  2DLA A;  3U88 C;  3HPH E;  2UV8 G;  1CX8 A;  1Z8L A;  4JZ0 A;  2XEG A;  4OC5 A;  3BXM A;  3VRP A;  1WJT A;  3FF3 A;  3OAK A;  5BY0 A;  3OB1 B;  2Y1M A;  2PVV A;  3F9K C;  3KAS A;  3SJF A;  1B47 A;  4BPX B;  3PT1 A;  4P4I A;  4A4B A;  3HMJ G;  2B4J C;  5ELY A;  3D7F A;  4JYW A;  3BUN B;  2CIJ A;  3FED A;  2C6G A;  4NGS A;  2PVW A;  2OR4 A;  3BI0 A;  4NGQ A;  4OC4 A;  4BPU B;  3BUW B;  4NGN A;  3S9N A; 
#chains in the Genus database with same CATH homology
 3HMJ G;  2DLA A;  2UV8 G;  4BPX B;  4BPU B;  4RR2 B;  3PT1 A;  5F13 A;  2VKZ G;  5BY0 A;  4BPW B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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