5BY0A

Crystal structure of magnesium-bound duf89 protein saccharomyces cerevisiae
Total Genus 190
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
190
sequence length
470
structure length
465
Chain Sequence
GHMTIPGRFMTIDKGTFGEYTASTRWPIIIQNAIDDLSKHQETEKSNGTKFEQGEVIKKELKEFRQEIIDRVPLRPFTEEEIKIANVPLSFNEYLKKHPEVNWGAVEWLFSEVYLYRRVNVLFQRQCEWAKFDIFNRLKQSTFESSFYGVVELALRYENLLPQLREMKQNDDILKVLFKEFIEISLWGNATDLSLLTNATLEDIKSIQGAKARAASESKIVVNDTEKAWEVLTKARADANSREIRVDFVLDNSGFELYADLMLAAFLLQSGLATKCIFHAKDIPYMVSDVMLKDFDILVHDLRDREFFPSGEPSTKESRALDLFAGEMEKFVSSGKIEFREDSFWTTELDYWNLDANETKYHGSILHKDLQKSNLVIFKGDLNYRKLTGDRKWPRTTKWETAIGPLATNGITSLSLRTCKADVQVALPEGLDAKLSQEWEKENPGRGSWWCCSGKWAVICFCSGI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase
molecule keywords Protein-glutamate O-methyltransferase
publication title Crystal structure of magnesium-bound Duf89 protein Saccharomyces cerevisiae
rcsb
source organism Saccharomyces cerevisiae (strain atcc 204508 / s288c)
total genus 190
structure length 465
sequence length 470
ec nomenclature ec 2.1.1.-:
pdb deposition date 2015-06-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01937 DUF89 Protein of unknown function DUF89
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.930.60 Mainly Alpha Up-down Bundle Transcription Elongation Factor S-II; Chain A Transcription Elongation Factor S-II; Chain A 5by0A02
5BY0A 3PT1A 5F13A
chains in the Genus database with same CATH superfamily
4MCQA 4MCRA 5F09A 3OB1B 3SJFA 1FBVA 4MCPA 3S9MA 2PVVA 5HKZA 4BPXB 3F9KC 4NGNA 4MCSA 3PT1A 2CBLA 3BUMB 4LQGA 4BPUB 3VGOA 2C6GA 3SJGA 3OP0A 4P45A 2C6CA 4NGPA 2XEIA 3OB2B 5BY0A 3FEDA 4X3RA 5ELYA 2N3AB 3FECA 3OAKA 4P4JA 3RBUA 1CX8A 1WJTA 4NGQA 2OR4A 3VROA 3D7DA 5F13A 3PFVA 4A4CA 5HKWA 5HKYA 1YVHA 3O8ZA 4P4DA 4A4BA 4NGSA 5J3XA 3FF3A 3SJEA 3IWWA 2JBKA 4OC2A 2UV8G 2XPOA 4NGMA 3BUWB 4RR2B 3BI1A 2XEFA 3ZNIA 3D7HA 2XEJA 1Z9EA 4P4BA 4JYWA 2XEGA 4OMEA 2C6PA 4P4EA 2JBJA 4GPLB 3BHXA 2CIJA 3BUXB 3U88C 4P4FA 4NGTA 3VRPA 3BXMA 3BUOB 2VKZG 4BTFA 2Y1MA 3KASA 4P4IA 3VRNA 3FEEA 2XPNA 3NFQA 4P44A 3D7GA 3HMJG 4W9YA 2PVWA 4NGRA 4OC4A 1Z8LA 3S9NA 3PLFB 2XPLA 1B47A 5AXIA 2DLAA 4JZ0A 1DE4C 3SJXA 4OC5A 3D7FA 3BI0A 3HPHE 3VRRA 1EO0A 2XPPA 4OC3A 2OOTA 4OC0A 3S9LA 2B4JC 2Y1NA 3HPGG 3VRQA 4BPWB 4OC1A 5D29A 3BUNB
chains in the Genus database with same CATH topology
2UV8G 3PT1A 3HMJG 2VKZG 4RR2B 4BPWB 5F13A 4BPXB 2DLAA 5BY0A 4BPUB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5BY0 A;  3PT1 A;  5F13 A; 
#chains in the Genus database with same CATH topology
 4MCQ A;  4MCR A;  5F09 A;  3OB1 B;  3SJF A;  1FBV A;  4MCP A;  3S9M A;  2PVV A;  5HKZ A;  4BPX B;  3F9K C;  4NGN A;  4MCS A;  3PT1 A;  2CBL A;  3BUM B;  4LQG A;  4BPU B;  3VGO A;  2C6G A;  3SJG A;  3OP0 A;  4P45 A;  2C6C A;  4NGP A;  2XEI A;  3OB2 B;  5BY0 A;  3FED A;  4X3R A;  5ELY A;  2N3A B;  3FEC A;  3OAK A;  4P4J A;  3RBU A;  1CX8 A;  1WJT A;  4NGQ A;  2OR4 A;  3VRO A;  3D7D A;  5F13 A;  3PFV A;  4A4C A;  5HKW A;  5HKY A;  1YVH A;  3O8Z A;  4P4D A;  4A4B A;  4NGS A;  5J3X A;  3FF3 A;  3SJE A;  3IWW A;  2JBK A;  4OC2 A;  2UV8 G;  2XPO A;  4NGM A;  3BUW B;  4RR2 B;  3BI1 A;  2XEF A;  3ZNI A;  3D7H A;  2XEJ A;  1Z9E A;  4P4B A;  4JYW A;  2XEG A;  4OME A;  2C6P A;  4P4E A;  2JBJ A;  4GPL B;  3BHX A;  2CIJ A;  3BUX B;  3U88 C;  4P4F A;  4NGT A;  3VRP A;  3BXM A;  3BUO B;  2VKZ G;  4BTF A;  2Y1M A;  3KAS A;  4P4I A;  3VRN A;  3FEE A;  2XPN A;  3NFQ A;  4P44 A;  3D7G A;  3HMJ G;  4W9Y A;  2PVW A;  4NGR A;  4OC4 A;  1Z8L A;  3S9N A;  3PLF B;  2XPL A;  1B47 A;  5AXI A;  2DLA A;  4JZ0 A;  1DE4 C;  3SJX A;  4OC5 A;  3D7F A;  3BI0 A;  3HPH E;  3VRR A;  1EO0 A;  2XPP A;  4OC3 A;  2OOT A;  4OC0 A;  3S9L A;  2B4J C;  2Y1N A;  3HPG G;  3VRQ A;  4BPW B;  4OC1 A;  5D29 A;  3BUN B; 
#chains in the Genus database with same CATH homology
 2UV8 G;  3PT1 A;  3HMJ G;  2VKZ G;  4RR2 B;  4BPW B;  5F13 A;  4BPX B;  2DLA A;  5BY0 A;  4BPU B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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