5BY0A

Crystal structure of magnesium-bound duf89 protein saccharomyces cerevisiae
Total Genus 190
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
190
sequence length
470
structure length
465
Chain Sequence
b'GHMTIPGRFMTIDKGTFGEYTASTRWPIIIQNAIDDLSKHQETEKSNGTKFEQGEVIKKELKEFRQEIIDRVPLRPFTEEEIKIANVPLSFNEYLKKHPEVNWGAVEWLFSEVYLYRRVNVLFQRQCEWAKFDIFNRLKQSTFESSFYGVVELALRYENLLPQLREMKQNDDILKVLFKEFIEISLWGNATDLSLLTNATLEDIKSIQGAKARAASESKIVVNDTEKAWEVLTKARADANSREIRVDFVLDNSGFELYADLMLAAFLLQSGLATKCIFHAKDIPYMVSDVMLKDFDILVHDLRDREFFPSGEPSTKESRALDLFAGEMEKFVSSGKIEFREDSFWTTELDYWNLDANETKYHGSILHKDLQKSNLVIFKGDLNYRKLTGDRKWPRTTKWETAIGPLATNGITSLSLRTCKADVQVALPEGLDAKLSQEWEKENPGRGSWWCCSGKWAVICFCSGI'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Protein-glutamate O-methyltransferase
publication title Crystal structure of magnesium-bound Duf89 protein Saccharomyces cerevisiae
rcsb
source organism Saccharomyces cerevisiae (strain atcc 204508 / s288c)
molecule tags Transferase
total genus 190
structure length 465
sequence length 470
ec nomenclature ec 2.1.1.-:
pdb deposition date 2015-06-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01937 DUF89 Protein of unknown function DUF89
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.930.60 Mainly Alpha Up-down Bundle Transcription Elongation Factor S-II; Chain A Transcription Elongation Factor S-II; Chain A 5by0A02
5BY0A 5F13A 3PT1A
chains in the Genus database with same CATH superfamily
3SJXA 3VRQA 2Y1NA 2XEIA 3BUMB 3FECA 4OC2A 3BUNB 3S9LA 4MCSA 3SJFA 3IWWA 5D29A 2OOTA 3HPHE 3O8ZA 2B4JC 4NGSA 5HKZA 4P4BA 4NGRA 4P45A 4NGTA 3S9NA 5BY0A 3BXMA 3HMJG 1YVHA 4W9YA 2CBLA 4OC0A 4NGMA 3VRPA 3FF3A 3D7FA 3BUWB 4X3RA 5ELYA 1WJTA 3PT1A 1Z8LA 4BPWB 3BHXA 2XEFA 4P4EA 3BI0A 4OC1A 2C6PA 1Z9EA 2XPPA 3KASA 2XEJA 4MCQA 2C6CA 5HKWA 5F13A 4A4BA 4BPUB 4JZ0A 5F09A 2Y1MA 3PLFB 5HKYA 2N3AB 4NGPA 3BUXB 1CX8A 3FEDA 2XPNA 4OMEA 4P4JA 2DLAA 4BTFA 3SJGA 3BI1A 4OC3A 3FEEA 4P4DA 1DE4C 2JBJA 1FBVA 3PFVA 2XPLA 4NGQA 1EO0A 1B47A 3OB1B 3U88C 2PVWA 2C6GA 3VROA 2PVVA 4P44A 3VGOA 3OAKA 2CIJA 4NGNA 3OP0A 2JBKA 4A4CA 3BUOB 3D7GA 2XPOA 3RBUA 2VKZG 2UV8G 4BPXB 3D7DA 4P4IA 4GPLB 3OB2B 4LQGA 3F9KC 5J3XA 3ZNIA 4JYWA 2OR4A 4OC4A 2XEGA 3VRNA 4OC5A 4MCRA 3D7HA 3HPGG 3VRRA 4MCPA 3NFQA 3SJEA 4P4FA 5AXIA 3S9MA 4RR2B
chains in the Genus database with same CATH topology
4BPUB 5BY0A 3HMJG 3PT1A 2VKZG 4BPWB 2UV8G 2DLAA 4BPXB 5F13A 4RR2B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5BY0 A;  5F13 A;  3PT1 A; 
#chains in the Genus database with same CATH topology
 3SJX A;  3VRQ A;  2Y1N A;  2XEI A;  3BUM B;  3FEC A;  4OC2 A;  3BUN B;  3S9L A;  4MCS A;  3SJF A;  3IWW A;  5D29 A;  2OOT A;  3HPH E;  3O8Z A;  2B4J C;  4NGS A;  5HKZ A;  4P4B A;  4NGR A;  4P45 A;  4NGT A;  3S9N A;  5BY0 A;  3BXM A;  3HMJ G;  1YVH A;  4W9Y A;  2CBL A;  4OC0 A;  4NGM A;  3VRP A;  3FF3 A;  3D7F A;  3BUW B;  4X3R A;  5ELY A;  1WJT A;  3PT1 A;  1Z8L A;  4BPW B;  3BHX A;  2XEF A;  4P4E A;  3BI0 A;  4OC1 A;  2C6P A;  1Z9E A;  2XPP A;  3KAS A;  2XEJ A;  4MCQ A;  2C6C A;  5HKW A;  5F13 A;  4A4B A;  4BPU B;  4JZ0 A;  5F09 A;  2Y1M A;  3PLF B;  5HKY A;  2N3A B;  4NGP A;  3BUX B;  1CX8 A;  3FED A;  2XPN A;  4OME A;  4P4J A;  2DLA A;  4BTF A;  3SJG A;  3BI1 A;  4OC3 A;  3FEE A;  4P4D A;  1DE4 C;  2JBJ A;  1FBV A;  3PFV A;  2XPL A;  4NGQ A;  1EO0 A;  1B47 A;  3OB1 B;  3U88 C;  2PVW A;  2C6G A;  3VRO A;  2PVV A;  4P44 A;  3VGO A;  3OAK A;  2CIJ A;  4NGN A;  3OP0 A;  2JBK A;  4A4C A;  3BUO B;  3D7G A;  2XPO A;  3RBU A;  2VKZ G;  2UV8 G;  4BPX B;  3D7D A;  4P4I A;  4GPL B;  3OB2 B;  4LQG A;  3F9K C;  5J3X A;  3ZNI A;  4JYW A;  2OR4 A;  4OC4 A;  2XEG A;  3VRN A;  4OC5 A;  4MCR A;  3D7H A;  3HPG G;  3VRR A;  4MCP A;  3NFQ A;  3SJE A;  4P4F A;  5AXI A;  3S9M A;  4RR2 B; 
#chains in the Genus database with same CATH homology
 4BPU B;  5BY0 A;  3HMJ G;  3PT1 A;  2VKZ G;  4BPW B;  2UV8 G;  2DLA A;  4BPX B;  5F13 A;  4RR2 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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