5BY0A

Crystal structure of magnesium-bound duf89 protein saccharomyces cerevisiae
Total Genus 190
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
190
sequence length
470
structure length
465
Chain Sequence
GHMTIPGRFMTIDKGTFGEYTASTRWPIIIQNAIDDLSKHQETEKSNGTKFEQGEVIKKELKEFRQEIIDRVPLRPFTEEEIKIANVPLSFNEYLKKHPEVNWGAVEWLFSEVYLYRRVNVLFQRQCEWAKFDIFNRLKQSTFESSFYGVVELALRYENLLPQLREMKQNDDILKVLFKEFIEISLWGNATDLSLLTNATLEDIKSIQGAKARAASESKIVVNDTEKAWEVLTKARADANSREIRVDFVLDNSGFELYADLMLAAFLLQSGLATKCIFHAKDIPYMVSDVMLKDFDILVHDLRDREFFPSGEPSTKESRALDLFAGEMEKFVSSGKIEFREDSFWTTELDYWNLDANETKYHGSILHKDLQKSNLVIFKGDLNYRKLTGDRKWPRTTKWETAIGPLATNGITSLSLRTCKADVQVALPEGLDAKLSQEWEKENPGRGSWWCCSGKWAVICFCSGI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Protein-glutamate O-methyltransferase
publication title Crystal structure of magnesium-bound Duf89 protein Saccharomyces cerevisiae
rcsb
source organism Saccharomyces cerevisiae (strain atcc 204508 / s288c)
molecule tags Transferase
total genus 190
structure length 465
sequence length 470
ec nomenclature ec 2.1.1.-:
pdb deposition date 2015-06-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01937 DUF89 Protein of unknown function DUF89
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.930.60 Mainly Alpha Up-down Bundle Transcription Elongation Factor S-II; Chain A Transcription Elongation Factor S-II; Chain A 5by0A02
3PT1A 5BY0A 5F13A
chains in the Genus database with same CATH superfamily
4A4CA 4OC3A 2XPNA 4NGMA 1CX8A 2XPLA 4P4IA 3VROA 5HKWA 3BUXB 5BY0A 1EO0A 1Z8LA 3D7HA 3BI1A 4NGQA 3D7FA 4JYWA 5AXIA 2OR4A 3BUMB 2XEIA 4MCQA 3SJFA 5HKYA 3VGOA 1Z9EA 2PVVA 4P4EA 3F9KC 3BXMA 3BI0A 4MCRA 3D7DA 4NGRA 2Y1NA 3FF3A 4OC4A 3OP0A 2XEFA 2C6PA 3HPGG 3VRNA 3VRPA 2B4JC 3D7GA 4X3RA 3HPHE 3U88C 3HMJG 2XEGA 2UV8G 2PVWA 2CBLA 3BUOB 3OB2B 3OB1B 4GPLB 5J3XA 2JBKA 3KASA 5ELYA 3SJXA 4BTFA 3S9LA 1YVHA 3SJEA 4P4JA 2Y1MA 3BUNB 3RBUA 3FEEA 3FECA 4NGTA 3IWWA 5D29A 4W9YA 4OC1A 2C6GA 4BPXB 3FEDA 4MCSA 3VRRA 5HKZA 3SJGA 2XPOA 2CIJA 1B47A 1DE4C 4RR2B 3BUWB 3NFQA 2VKZG 4A4BA 3BHXA 2XEJA 3PT1A 3PLFB 4BPUB 3S9MA 4OC0A 5F09A 1FBVA 4JZ0A 4NGNA 2C6CA 2OOTA 3O8ZA 3OAKA 4MCPA 4NGPA 4P44A 2JBJA 2N3AB 2XPPA 4P4FA 4OC5A 5F13A 4P4BA 2DLAA 1WJTA 3PFVA 3ZNIA 4LQGA 4P45A 4OC2A 4BPWB 4NGSA 4P4DA 3VRQA 3S9NA 4OMEA
chains in the Genus database with same CATH topology
2DLAA 4RR2B 5BY0A 3HMJG 2VKZG 4BPWB 5F13A 2UV8G 3PT1A 4BPXB 4BPUB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3PT1 A;  5BY0 A;  5F13 A; 
#chains in the Genus database with same CATH topology
 4A4C A;  4OC3 A;  2XPN A;  4NGM A;  1CX8 A;  2XPL A;  4P4I A;  3VRO A;  5HKW A;  3BUX B;  5BY0 A;  1EO0 A;  1Z8L A;  3D7H A;  3BI1 A;  4NGQ A;  3D7F A;  4JYW A;  5AXI A;  2OR4 A;  3BUM B;  2XEI A;  4MCQ A;  3SJF A;  5HKY A;  3VGO A;  1Z9E A;  2PVV A;  4P4E A;  3F9K C;  3BXM A;  3BI0 A;  4MCR A;  3D7D A;  4NGR A;  2Y1N A;  3FF3 A;  4OC4 A;  3OP0 A;  2XEF A;  2C6P A;  3HPG G;  3VRN A;  3VRP A;  2B4J C;  3D7G A;  4X3R A;  3HPH E;  3U88 C;  3HMJ G;  2XEG A;  2UV8 G;  2PVW A;  2CBL A;  3BUO B;  3OB2 B;  3OB1 B;  4GPL B;  5J3X A;  2JBK A;  3KAS A;  5ELY A;  3SJX A;  4BTF A;  3S9L A;  1YVH A;  3SJE A;  4P4J A;  2Y1M A;  3BUN B;  3RBU A;  3FEE A;  3FEC A;  4NGT A;  3IWW A;  5D29 A;  4W9Y A;  4OC1 A;  2C6G A;  4BPX B;  3FED A;  4MCS A;  3VRR A;  5HKZ A;  3SJG A;  2XPO A;  2CIJ A;  1B47 A;  1DE4 C;  4RR2 B;  3BUW B;  3NFQ A;  2VKZ G;  4A4B A;  3BHX A;  2XEJ A;  3PT1 A;  3PLF B;  4BPU B;  3S9M A;  4OC0 A;  5F09 A;  1FBV A;  4JZ0 A;  4NGN A;  2C6C A;  2OOT A;  3O8Z A;  3OAK A;  4MCP A;  4NGP A;  4P44 A;  2JBJ A;  2N3A B;  2XPP A;  4P4F A;  4OC5 A;  5F13 A;  4P4B A;  2DLA A;  1WJT A;  3PFV A;  3ZNI A;  4LQG A;  4P45 A;  4OC2 A;  4BPW B;  4NGS A;  4P4D A;  3VRQ A;  3S9N A;  4OME A; 
#chains in the Genus database with same CATH homology
 2DLA A;  4RR2 B;  5BY0 A;  3HMJ G;  2VKZ G;  4BPW B;  5F13 A;  2UV8 G;  3PT1 A;  4BPX B;  4BPU B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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