1WJT | Genus

Total Genus 24

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	24
sequence length	103
structure length	103
Chain Sequence	GSSGSSGMGLEEELLRIAKKLEKMVSRKKTEGALDLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWKRLLDSPRTTKGERESGPSSG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

loadScript /static/js/j2s/core/package.js

loadScript /static/js/j2s/core/corejmol.z.js

loadScript /static/js/j2s/core/corescript.z.js

JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__0433251868915576__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__0433251868915576__)

vwrOptions:

{ "name":"jmolApplet0","applet":true,"documentBase":"https://genus.fuw.edu.pl/view/1WJT/A/","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__0433251868915576__","codePath":"https:/static/js/j2s/","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"0433251868915576","bgcolor":"white" }

setting document base to "https://genus.fuw.edu.pl/view/1WJT/A/"

Jmol Version: 14.29.13 2018-04-17 17:17

java.vendor: Java2Script (HTML5)

java.version: 2018-01-28 23:38:52 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor white

backgroundColor = "white"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet0__0433251868915576__ ready

script 1 started

platformSpeed = 8

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transcription
source organism	Mus musculus
publication title	Solution structure of the N-terminal Domain I of mouse transcription elongation factor S-II protein 3 rcsb
molecule keywords	Transcription elongation factor S-II protein 3
total genus	24
structure length	103
sequence length	103
ec nomenclature
pdb deposition date	2004-05-29

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF08711	Med26	TFIIS helical bundle-like domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.930.10	Mainly Alpha	Up-down Bundle	Transcription Elongation Factor S-II; Chain A	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	1wjtA00

3HPGG 3O8ZA 2N3AB 3OAKA 2XPPA 3NFQA 2XPOA 3F9KC 3U88C 2B4JC 3HPHE 2XPNA 2XPLA 1WJTA 1Z9EA 1EO0A
chains in the Genus database with same CATH superfamily

4A4CA 5F09A 3VRRA 3S9LA 4P4IA 4RR2B 5HKZA 3S9NA 3OB1B 4P4FA 3PLFB 3HMJG 3BUOB 4NGTA 4NGNA 3RBUA 3FEDA 3HPHE 3FF3A 3BUNB 4P4JA 2OOTA 4OC3A 4NGMA 3ZNIA 4BPUB 5HKWA 4OC1A 3VRPA 2JBJA 4OC5A 3HPGG 3OP0A 4MCQA 2PVWA 4JZ0A 2XPLA 1WJTA 4P44A 3SJFA 5HKYA 2XEGA 2XEJA 2XEIA 4W9YA 4JYWA 4MCSA 2Y1NA 3D7FA 2VKZG 4NGSA 4P4EA 3VRQA 4P45A 1Z9EA 3PFVA 3S9MA 4BPXB 4NGRA 2CIJA 3OB2B 4X3RA 2XEFA 2C6CA 4BPWB 2CBLA 5AXIA 4P4DA 4NGPA 3KASA 3PT1A 5D29A 1YVHA 2C6PA 1FBVA 4OC2A 3F9KC 3VGOA 3O8ZA 2Y1MA 4NGQA 4OMEA 2UV8G 3NFQA 2JBKA 3VRNA 3BI0A 3BUWB 4MCPA 4OC4A 3D7DA 4MCRA 1DE4C 4BTFA 3FECA 2OR4A 2XPOA 3U88C 4LQGA 4GPLB 2N3AB 2XPPA 2C6GA 3D7HA 3BXMA 3D7GA 3SJEA 1Z8LA 5J3XA 5F13A 4P4BA 3BUXB 3FEEA 5ELYA 1B47A 3BI1A 3SJXA 2DLAA 1CX8A 5BY0A 3IWWA 3BUMB 3VROA 4OC0A 2PVVA 2XPNA 1EO0A 3BHXA 3OAKA 3SJGA 4A4BA 2B4JC
chains in the Genus database with same CATH topology

3HPGG 3O8ZA 2N3AB 3OAKA 2XPPA 3NFQA 2XPOA 3F9KC 3U88C 2B4JC 3HPHE 2XPNA 2XPLA 1WJTA 1Z9EA 1EO0A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3HPG G;  3O8Z A;  2N3A B;  3OAK A;  2XPP A;  3NFQ A;  2XPO A;  3F9K C;  3U88 C;  2B4J C;  3HPH E;  2XPN A;  2XPL A;  1WJT A;  1Z9E A;  1EO0 A; 
#chains in the Genus database with same CATH topology
 4A4C A;  5F09 A;  3VRR A;  3S9L A;  4P4I A;  4RR2 B;  5HKZ A;  3S9N A;  3OB1 B;  4P4F A;  3PLF B;  3HMJ G;  3BUO B;  4NGT A;  4NGN A;  3RBU A;  3FED A;  3HPH E;  3FF3 A;  3BUN B;  4P4J A;  2OOT A;  4OC3 A;  4NGM A;  3ZNI A;  4BPU B;  5HKW A;  4OC1 A;  3VRP A;  2JBJ A;  4OC5 A;  3HPG G;  3OP0 A;  4MCQ A;  2PVW A;  4JZ0 A;  2XPL A;  1WJT A;  4P44 A;  3SJF A;  5HKY A;  2XEG A;  2XEJ A;  2XEI A;  4W9Y A;  4JYW A;  4MCS A;  2Y1N A;  3D7F A;  2VKZ G;  4NGS A;  4P4E A;  3VRQ A;  4P45 A;  1Z9E A;  3PFV A;  3S9M A;  4BPX B;  4NGR A;  2CIJ A;  3OB2 B;  4X3R A;  2XEF A;  2C6C A;  4BPW B;  2CBL A;  5AXI A;  4P4D A;  4NGP A;  3KAS A;  3PT1 A;  5D29 A;  1YVH A;  2C6P A;  1FBV A;  4OC2 A;  3F9K C;  3VGO A;  3O8Z A;  2Y1M A;  4NGQ A;  4OME A;  2UV8 G;  3NFQ A;  2JBK A;  3VRN A;  3BI0 A;  3BUW B;  4MCP A;  4OC4 A;  3D7D A;  4MCR A;  1DE4 C;  4BTF A;  3FEC A;  2OR4 A;  2XPO A;  3U88 C;  4LQG A;  4GPL B;  2N3A B;  2XPP A;  2C6G A;  3D7H A;  3BXM A;  3D7G A;  3SJE A;  1Z8L A;  5J3X A;  5F13 A;  4P4B A;  3BUX B;  3FEE A;  5ELY A;  1B47 A;  3BI1 A;  3SJX A;  2DLA A;  1CX8 A;  5BY0 A;  3IWW A;  3BUM B;  3VRO A;  4OC0 A;  2PVV A;  2XPN A;  1EO0 A;  3BHX A;  3OAK A;  3SJG A;  4A4B A;  2B4J C; 
#chains in the Genus database with same CATH homology
 3HPG G;  3O8Z A;  2N3A B;  3OAK A;  2XPP A;  3NFQ A;  2XPO A;  3F9K C;  3U88 C;  2B4J C;  3HPH E;  2XPN A;  2XPL A;  1WJT A;  1Z9E A;  1EO0 A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

1WJTA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations