2N3AB

Solution structure of ledgf/p75 ibd in complex with pogz peptide (1389-1404)
Total Genus 26

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
79
structure length
79
Chain Sequence
MDSRLQRIHAEIKNSLKIDNLDVNRCIEALDELASLQVTMQQAQKHTEMITTLKKIRRFKVSQVIMEKSTMLYNKFKNM

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
molecule tags Protein binding
source organism Homo sapiens
publication title Multiple cellular proteins interact with LEDGF/p75 through a conserved unstructured consensus motif.
pubmed doi rcsb
molecule keywords Pogo transposable element with ZNF domain
total genus 26
structure length 79
sequence length 79
ec nomenclature
pdb deposition date 2015-05-26
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.930.10 Mainly Alpha Up-down Bundle Transcription Elongation Factor S-II; Chain A Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 2n3aB00
3HPHE 2XPLA 3HPGG 3NFQA 3U88C 1WJTA 2N3AB 3F9KC 2B4JC 2XPOA 2XPNA 3OAKA 3O8ZA 1Z9EA 1EO0A 2XPPA
chains in the Genus database with same CATH superfamily
3BUOB 4P45A 4OC0A 1Z8LA 3OP0A 2Y1MA 3O8ZA 4MCRA 2XEGA 3BI1A 4P4BA 3OB1B 2B4JC 4P4DA 2XPNA 2PVVA 2PVWA 1Z9EA 3BUWB 3KASA 4OC4A 4MCSA 4MCQA 4NGPA 2CIJA 3S9NA 2JBJA 2N3AB 4BPWB 3PFVA 5F13A 3FEEA 2JBKA 4RR2B 1EO0A 3HPHE 3ZNIA 3SJXA 3BUMB 4OMEA 1YVHA 5AXIA 3RBUA 5BY0A 3BUXB 2C6GA 5F09A 4JYWA 5ELYA 3D7HA 4JZ0A 4GPLB 4NGSA 4OC2A 4BPUB 1CX8A 4OC5A 3BXMA 4A4CA 4P4EA 2UV8G 3VRQA 3PT1A 4NGQA 3PLFB 3D7DA 3VGOA 2XEIA 1WJTA 2XEJA 4MCPA 4X3RA 2C6CA 2XPLA 2XEFA 3OB2B 4P4FA 3U88C 4A4BA 4NGRA 2C6PA 4P44A 2OOTA 3FF3A 3OAKA 3S9MA 4OC1A 4BPXB 2XPPA 3NFQA 1DE4C 3SJGA 3SJFA 3D7FA 3VRRA 2OR4A 2CBLA 3VRPA 3FECA 5J3XA 2DLAA 3SJEA 4P4JA 1FBVA 2Y1NA 4BTFA 3D7GA 5HKZA 4W9YA 5HKWA 5D29A 2VKZG 3BI0A 3HMJG 4NGNA 2XPOA 4LQGA 3VROA 4OC3A 3F9KC 3VRNA 5HKYA 4NGMA 3IWWA 1B47A 3BHXA 3HPGG 3BUNB 3S9LA 4NGTA 3FEDA 4P4IA
chains in the Genus database with same CATH topology
3HPHE 2XPLA 3HPGG 3NFQA 3U88C 1WJTA 2N3AB 3F9KC 2B4JC 2XPOA 2XPNA 3OAKA 3O8ZA 1Z9EA 1EO0A 2XPPA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3HPH E;  2XPL A;  3HPG G;  3NFQ A;  3U88 C;  1WJT A;  2N3A B;  3F9K C;  2B4J C;  2XPO A;  2XPN A;  3OAK A;  3O8Z A;  1Z9E A;  1EO0 A;  2XPP A; 
#chains in the Genus database with same CATH topology
 3BUO B;  4P45 A;  4OC0 A;  1Z8L A;  3OP0 A;  2Y1M A;  3O8Z A;  4MCR A;  2XEG A;  3BI1 A;  4P4B A;  3OB1 B;  2B4J C;  4P4D A;  2XPN A;  2PVV A;  2PVW A;  1Z9E A;  3BUW B;  3KAS A;  4OC4 A;  4MCS A;  4MCQ A;  4NGP A;  2CIJ A;  3S9N A;  2JBJ A;  2N3A B;  4BPW B;  3PFV A;  5F13 A;  3FEE A;  2JBK A;  4RR2 B;  1EO0 A;  3HPH E;  3ZNI A;  3SJX A;  3BUM B;  4OME A;  1YVH A;  5AXI A;  3RBU A;  5BY0 A;  3BUX B;  2C6G A;  5F09 A;  4JYW A;  5ELY A;  3D7H A;  4JZ0 A;  4GPL B;  4NGS A;  4OC2 A;  4BPU B;  1CX8 A;  4OC5 A;  3BXM A;  4A4C A;  4P4E A;  2UV8 G;  3VRQ A;  3PT1 A;  4NGQ A;  3PLF B;  3D7D A;  3VGO A;  2XEI A;  1WJT A;  2XEJ A;  4MCP A;  4X3R A;  2C6C A;  2XPL A;  2XEF A;  3OB2 B;  4P4F A;  3U88 C;  4A4B A;  4NGR A;  2C6P A;  4P44 A;  2OOT A;  3FF3 A;  3OAK A;  3S9M A;  4OC1 A;  4BPX B;  2XPP A;  3NFQ A;  1DE4 C;  3SJG A;  3SJF A;  3D7F A;  3VRR A;  2OR4 A;  2CBL A;  3VRP A;  3FEC A;  5J3X A;  2DLA A;  3SJE A;  4P4J A;  1FBV A;  2Y1N A;  4BTF A;  3D7G A;  5HKZ A;  4W9Y A;  5HKW A;  5D29 A;  2VKZ G;  3BI0 A;  3HMJ G;  4NGN A;  2XPO A;  4LQG A;  3VRO A;  4OC3 A;  3F9K C;  3VRN A;  5HKY A;  4NGM A;  3IWW A;  1B47 A;  3BHX A;  3HPG G;  3BUN B;  3S9L A;  4NGT A;  3FED A;  4P4I A; 
#chains in the Genus database with same CATH homology
 3HPH E;  2XPL A;  3HPG G;  3NFQ A;  3U88 C;  1WJT A;  2N3A B;  3F9K C;  2B4J C;  2XPO A;  2XPN A;  3OAK A;  3O8Z A;  1Z9E A;  1EO0 A;  2XPP A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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