2XPL | Genus

Total Genus 57

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	57
sequence length	142
structure length	142
Chain Sequence	HMDPGTVLEISRSLKKRMQDILKKDNANNLEGRPATGKIENVEEISDILMSKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMKIHKEHLVTSGVGKIVYFYSINPKESKEVRASAKALVQKWTNEVFKP

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transcription
source organism	Encephalitozoon cuniculi
publication title	The Structure of an Iws1/Spt6 Complex Reveals an Interaction Domain Conserved in Tfiis, Elongin a and Med26 pubmed doi rcsb
molecule keywords	IWS1
total genus	57
structure length	142
sequence length	142
chains with identical sequence	B
ec nomenclature
pdb deposition date	2010-08-27

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF08711	Med26	TFIIS helical bundle-like domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.930.10	Mainly Alpha	Up-down Bundle	Transcription Elongation Factor S-II; Chain A	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	2xplA00

3F9KC 2B4JC 1WJTA 3HPGG 3NFQA 2XPNA 2N3AB 3U88C 2XPOA 3O8ZA 1EO0A 3HPHE 3OAKA 2XPPA 1Z9EA 2XPLA
chains in the Genus database with same CATH superfamily

3HPGG 5HKZA 4NGMA 4BPXB 3U88C 4P44A 1EO0A 3D7GA 3FF3A 3OB2B 1DE4C 4P4BA 2CIJA 3VRRA 3BUMB 4BTFA 3FEEA 2C6PA 4OMEA 4P4DA 5ELYA 3SJFA 4MCPA 5J3XA 3S9LA 5AXIA 4OC2A 2Y1NA 4GPLB 3SJGA 3RBUA 4W9YA 2CBLA 2XPOA 3HPHE 4A4BA 4MCRA 2JBJA 3O8ZA 4P4FA 4X3RA 5F13A 3BUWB 3OP0A 4NGPA 4BPWB 2B4JC 3FEDA 3OB1B 2PVVA 3HMJG 4P4IA 3PT1A 3BUOB 3BXMA 4NGRA 2UV8G 1YVHA 3VROA 2XPNA 2OR4A 4NGNA 4RR2B 4OC5A 3BUNB 3ZNIA 3D7HA 3VRQA 5D29A 3S9NA 3KASA 2PVWA 1Z9EA 3PFVA 2XPLA 4P4EA 2C6CA 4JZ0A 3VRPA 3SJEA 2N3AB 4NGSA 3S9MA 3F9KC 1WJTA 3PLFB 3VGOA 2DLAA 1FBVA 2VKZG 2XEIA 3IWWA 4P4JA 4LQGA 2C6GA 3FECA 3BHXA 3BI0A 4OC3A 5BY0A 4NGTA 2JBKA 2Y1MA 3D7FA 3NFQA 2XEFA 4MCSA 4NGQA 3OAKA 4OC4A 3VRNA 2XPPA 3D7DA 1CX8A 4MCQA 1Z8LA 4OC0A 1B47A 3BI1A 2XEJA 4JYWA 2XEGA 5HKWA 3BUXB 4P45A 3SJXA 2OOTA 4A4CA 5F09A 4OC1A 5HKYA 4BPUB
chains in the Genus database with same CATH topology

3F9KC 2B4JC 1WJTA 3HPGG 3NFQA 2XPNA 2N3AB 3U88C 2XPOA 3O8ZA 1EO0A 3HPHE 3OAKA 2XPPA 1Z9EA 2XPLA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3F9K C;  2B4J C;  1WJT A;  3HPG G;  3NFQ A;  2XPN A;  2N3A B;  3U88 C;  2XPO A;  3O8Z A;  1EO0 A;  3HPH E;  3OAK A;  2XPP A;  1Z9E A;  2XPL A; 
#chains in the Genus database with same CATH topology
 3HPG G;  5HKZ A;  4NGM A;  4BPX B;  3U88 C;  4P44 A;  1EO0 A;  3D7G A;  3FF3 A;  3OB2 B;  1DE4 C;  4P4B A;  2CIJ A;  3VRR A;  3BUM B;  4BTF A;  3FEE A;  2C6P A;  4OME A;  4P4D A;  5ELY A;  3SJF A;  4MCP A;  5J3X A;  3S9L A;  5AXI A;  4OC2 A;  2Y1N A;  4GPL B;  3SJG A;  3RBU A;  4W9Y A;  2CBL A;  2XPO A;  3HPH E;  4A4B A;  4MCR A;  2JBJ A;  3O8Z A;  4P4F A;  4X3R A;  5F13 A;  3BUW B;  3OP0 A;  4NGP A;  4BPW B;  2B4J C;  3FED A;  3OB1 B;  2PVV A;  3HMJ G;  4P4I A;  3PT1 A;  3BUO B;  3BXM A;  4NGR A;  2UV8 G;  1YVH A;  3VRO A;  2XPN A;  2OR4 A;  4NGN A;  4RR2 B;  4OC5 A;  3BUN B;  3ZNI A;  3D7H A;  3VRQ A;  5D29 A;  3S9N A;  3KAS A;  2PVW A;  1Z9E A;  3PFV A;  2XPL A;  4P4E A;  2C6C A;  4JZ0 A;  3VRP A;  3SJE A;  2N3A B;  4NGS A;  3S9M A;  3F9K C;  1WJT A;  3PLF B;  3VGO A;  2DLA A;  1FBV A;  2VKZ G;  2XEI A;  3IWW A;  4P4J A;  4LQG A;  2C6G A;  3FEC A;  3BHX A;  3BI0 A;  4OC3 A;  5BY0 A;  4NGT A;  2JBK A;  2Y1M A;  3D7F A;  3NFQ A;  2XEF A;  4MCS A;  4NGQ A;  3OAK A;  4OC4 A;  3VRN A;  2XPP A;  3D7D A;  1CX8 A;  4MCQ A;  1Z8L A;  4OC0 A;  1B47 A;  3BI1 A;  2XEJ A;  4JYW A;  2XEG A;  5HKW A;  3BUX B;  4P45 A;  3SJX A;  2OOT A;  4A4C A;  5F09 A;  4OC1 A;  5HKY A;  4BPU B; 
#chains in the Genus database with same CATH homology
 3F9K C;  2B4J C;  1WJT A;  3HPG G;  3NFQ A;  2XPN A;  2N3A B;  3U88 C;  2XPO A;  3O8Z A;  1EO0 A;  3HPH E;  3OAK A;  2XPP A;  1Z9E A;  2XPL A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2XPLA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations