2XPN | Genus

Total Genus 62

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	62
sequence length	138
structure length	138
Chain Sequence	MDPGTVLEISRSLKKRMQDILKKDNANNLEGRPATGKIENVEEISDILMSKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMKIHKEHLVTSGVGKIVYFYSINPKESKEVRASAKALVQKWTNEV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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Time for openFile(/file/5cfdf47e9d27cb8b930279c6/pdb.gz): 1038 ms

reading 138 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

138 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 18 ms

Adding embedded #jmolscript: select ({0:137});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transcription
source organism	Encephalitozoon cuniculi
publication title	The Structure of an Iws1/Spt6 Complex Reveals an Interaction Domain Conserved in Tfiis, Elongin a and Med26 pubmed doi rcsb
molecule keywords	IWS1
total genus	62
structure length	138
sequence length	138
ec nomenclature
pdb deposition date	2010-08-27

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF08711	Med26	TFIIS helical bundle-like domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.930.10	Mainly Alpha	Up-down Bundle	Transcription Elongation Factor S-II; Chain A	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	2xpnA00

2XPPA 2XPNA 3O8ZA 3HPGG 3OAKA 3U88C 2XPLA 1Z9EA 3HPHE 2B4JC 2N3AB 3NFQA 3F9KC 1EO0A 1WJTA 2XPOA
chains in the Genus database with same CATH superfamily

2JBKA 3IWWA 3VRQA 3SJGA 3VROA 2N3AB 5HKZA 3BUOB 3SJEA 4GPLB 1Z8LA 2OOTA 4OMEA 4NGSA 3VRNA 3OAKA 3FF3A 4BPUB 1B47A 4MCRA 4OC0A 5F13A 4P4BA 2VKZG 3U88C 2B4JC 2PVWA 3PT1A 5HKYA 2OR4A 4P45A 4JZ0A 4OC2A 1DE4C 3S9NA 4NGTA 4MCSA 2C6PA 4A4BA 2UV8G 4BPWB 3RBUA 3D7DA 1FBVA 4OC3A 5D29A 5ELYA 4OC5A 4MCQA 3BUXB 1CX8A 4P4FA 4NGRA 4P4IA 5J3XA 2XEFA 3HPGG 4NGNA 3BXMA 3D7GA 3KASA 3D7FA 3BHXA 1WJTA 2XPPA 4W9YA 3BUWB 3HMJG 4MCPA 3S9MA 2XEJA 3OB2B 1YVHA 4OC1A 1EO0A 4P44A 2PVVA 4OC4A 2XPNA 3D7HA 4A4CA 3HPHE 3FECA 2C6CA 4BTFA 4BPXB 3FEDA 4NGQA 4RR2B 2CIJA 3F9KC 4JYWA 2Y1NA 3BUMB 4LQGA 5HKWA 3PLFB 2DLAA 4X3RA 2JBJA 2Y1MA 4NGMA 3BI1A 3ZNIA 2XPLA 1Z9EA 3NFQA 4P4JA 2C6GA 3O8ZA 2XEGA 3PFVA 5AXIA 3BI0A 3FEEA 5BY0A 2XEIA 3OP0A 4P4DA 3VRRA 3VRPA 3SJFA 3BUNB 4P4EA 2XPOA 5F09A 2CBLA 3OB1B 3SJXA 3S9LA 3VGOA 4NGPA
chains in the Genus database with same CATH topology

2XPPA 2XPNA 3O8ZA 3HPGG 3OAKA 3U88C 2XPLA 1Z9EA 3HPHE 2B4JC 2N3AB 3NFQA 3F9KC 1EO0A 1WJTA 2XPOA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2XPP A;  2XPN A;  3O8Z A;  3HPG G;  3OAK A;  3U88 C;  2XPL A;  1Z9E A;  3HPH E;  2B4J C;  2N3A B;  3NFQ A;  3F9K C;  1EO0 A;  1WJT A;  2XPO A; 
#chains in the Genus database with same CATH topology
 2JBK A;  3IWW A;  3VRQ A;  3SJG A;  3VRO A;  2N3A B;  5HKZ A;  3BUO B;  3SJE A;  4GPL B;  1Z8L A;  2OOT A;  4OME A;  4NGS A;  3VRN A;  3OAK A;  3FF3 A;  4BPU B;  1B47 A;  4MCR A;  4OC0 A;  5F13 A;  4P4B A;  2VKZ G;  3U88 C;  2B4J C;  2PVW A;  3PT1 A;  5HKY A;  2OR4 A;  4P45 A;  4JZ0 A;  4OC2 A;  1DE4 C;  3S9N A;  4NGT A;  4MCS A;  2C6P A;  4A4B A;  2UV8 G;  4BPW B;  3RBU A;  3D7D A;  1FBV A;  4OC3 A;  5D29 A;  5ELY A;  4OC5 A;  4MCQ A;  3BUX B;  1CX8 A;  4P4F A;  4NGR A;  4P4I A;  5J3X A;  2XEF A;  3HPG G;  4NGN A;  3BXM A;  3D7G A;  3KAS A;  3D7F A;  3BHX A;  1WJT A;  2XPP A;  4W9Y A;  3BUW B;  3HMJ G;  4MCP A;  3S9M A;  2XEJ A;  3OB2 B;  1YVH A;  4OC1 A;  1EO0 A;  4P44 A;  2PVV A;  4OC4 A;  2XPN A;  3D7H A;  4A4C A;  3HPH E;  3FEC A;  2C6C A;  4BTF A;  4BPX B;  3FED A;  4NGQ A;  4RR2 B;  2CIJ A;  3F9K C;  4JYW A;  2Y1N A;  3BUM B;  4LQG A;  5HKW A;  3PLF B;  2DLA A;  4X3R A;  2JBJ A;  2Y1M A;  4NGM A;  3BI1 A;  3ZNI A;  2XPL A;  1Z9E A;  3NFQ A;  4P4J A;  2C6G A;  3O8Z A;  2XEG A;  3PFV A;  5AXI A;  3BI0 A;  3FEE A;  5BY0 A;  2XEI A;  3OP0 A;  4P4D A;  3VRR A;  3VRP A;  3SJF A;  3BUN B;  4P4E A;  2XPO A;  5F09 A;  2CBL A;  3OB1 B;  3SJX A;  3S9L A;  3VGO A;  4NGP A; 
#chains in the Genus database with same CATH homology
 2XPP A;  2XPN A;  3O8Z A;  3HPG G;  3OAK A;  3U88 C;  2XPL A;  1Z9E A;  3HPH E;  2B4J C;  2N3A B;  3NFQ A;  3F9K C;  1EO0 A;  1WJT A;  2XPO A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2XPNA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations