2XPO | Genus

Total Genus 57

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	57
sequence length	139
structure length	139
Chain Sequence	MDPGTVLEISRSLKKRMQDILKKDNANNLEGRPATGKIENVEEISDILMSKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMKIHKEHLVTSGVGKIVYFYSINPKESKEVRASAKALVQKWTNEVF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transcription
source organism	Encephalitozoon cuniculi
publication title	The Structure of an Iws1/Spt6 Complex Reveals an Interaction Domain Conserved in Tfiis, Elongin a and Med26 pubmed doi rcsb
molecule keywords	IWS1
total genus	57
structure length	139
sequence length	139
chains with identical sequence	C
ec nomenclature
pdb deposition date	2010-08-27

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF08711	Med26	TFIIS helical bundle-like domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.930.10	Mainly Alpha	Up-down Bundle	Transcription Elongation Factor S-II; Chain A	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	2xpoA00

2XPNA 2XPOA 1Z9EA 3OAKA 3NFQA 3HPGG 3O8ZA 2B4JC 3F9KC 3HPHE 2XPPA 3U88C 1EO0A 1WJTA 2XPLA 2N3AB
chains in the Genus database with same CATH superfamily

4JYWA 1B47A 2C6GA 2XEIA 3FEDA 1YVHA 4NGQA 4OC1A 2XEGA 4P45A 4NGPA 4BPXB 3S9NA 3BUNB 5ELYA 3F9KC 3VRQA 3RBUA 2XPOA 3BUWB 2JBKA 5HKZA 3BHXA 3D7HA 3FF3A 3BUXB 3PLFB 4NGRA 3VRNA 4A4BA 2OR4A 4OC3A 3VGOA 3VRRA 2JBJA 2CBLA 4BTFA 5F13A 1FBVA 4NGNA 3BUOB 4MCQA 3OB2B 1Z9EA 2PVVA 4OC4A 4W9YA 1DE4C 2XPLA 1CX8A 1Z8LA 4BPWB 4MCPA 4P4BA 4P4EA 3VROA 4NGSA 3FECA 1WJTA 2XEJA 3IWWA 4P4DA 3KASA 2XPNA 2VKZG 3D7DA 3PT1A 4RR2B 3S9MA 4GPLB 3ZNIA 5BY0A 3OAKA 2DLAA 4P4JA 3HMJG 2C6CA 3BI1A 3NFQA 5D29A 5F09A 2CIJA 4NGMA 2Y1NA 2UV8G 3OB1B 3OP0A 2C6PA 5AXIA 4X3RA 4OMEA 3S9LA 4OC2A 3BUMB 4MCSA 2Y1MA 4A4CA 4P44A 3BI0A 3HPGG 3D7GA 3HPHE 3VRPA 3BXMA 4MCRA 2PVWA 3FEEA 4OC5A 3O8ZA 3PFVA 4NGTA 3SJXA 3SJEA 4P4FA 4BPUB 2B4JC 5HKYA 2XPPA 4OC0A 5J3XA 3SJFA 4P4IA 5HKWA 2OOTA 1EO0A 4LQGA 2N3AB 3SJGA 3D7FA 3U88C 2XEFA 4JZ0A
chains in the Genus database with same CATH topology

2XPNA 2XPOA 1Z9EA 3OAKA 3NFQA 3HPGG 3O8ZA 2B4JC 3F9KC 3HPHE 2XPPA 3U88C 1EO0A 1WJTA 2XPLA 2N3AB
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2XPN A;  2XPO A;  1Z9E A;  3OAK A;  3NFQ A;  3HPG G;  3O8Z A;  2B4J C;  3F9K C;  3HPH E;  2XPP A;  3U88 C;  1EO0 A;  1WJT A;  2XPL A;  2N3A B; 
#chains in the Genus database with same CATH topology
 4JYW A;  1B47 A;  2C6G A;  2XEI A;  3FED A;  1YVH A;  4NGQ A;  4OC1 A;  2XEG A;  4P45 A;  4NGP A;  4BPX B;  3S9N A;  3BUN B;  5ELY A;  3F9K C;  3VRQ A;  3RBU A;  2XPO A;  3BUW B;  2JBK A;  5HKZ A;  3BHX A;  3D7H A;  3FF3 A;  3BUX B;  3PLF B;  4NGR A;  3VRN A;  4A4B A;  2OR4 A;  4OC3 A;  3VGO A;  3VRR A;  2JBJ A;  2CBL A;  4BTF A;  5F13 A;  1FBV A;  4NGN A;  3BUO B;  4MCQ A;  3OB2 B;  1Z9E A;  2PVV A;  4OC4 A;  4W9Y A;  1DE4 C;  2XPL A;  1CX8 A;  1Z8L A;  4BPW B;  4MCP A;  4P4B A;  4P4E A;  3VRO A;  4NGS A;  3FEC A;  1WJT A;  2XEJ A;  3IWW A;  4P4D A;  3KAS A;  2XPN A;  2VKZ G;  3D7D A;  3PT1 A;  4RR2 B;  3S9M A;  4GPL B;  3ZNI A;  5BY0 A;  3OAK A;  2DLA A;  4P4J A;  3HMJ G;  2C6C A;  3BI1 A;  3NFQ A;  5D29 A;  5F09 A;  2CIJ A;  4NGM A;  2Y1N A;  2UV8 G;  3OB1 B;  3OP0 A;  2C6P A;  5AXI A;  4X3R A;  4OME A;  3S9L A;  4OC2 A;  3BUM B;  4MCS A;  2Y1M A;  4A4C A;  4P44 A;  3BI0 A;  3HPG G;  3D7G A;  3HPH E;  3VRP A;  3BXM A;  4MCR A;  2PVW A;  3FEE A;  4OC5 A;  3O8Z A;  3PFV A;  4NGT A;  3SJX A;  3SJE A;  4P4F A;  4BPU B;  2B4J C;  5HKY A;  2XPP A;  4OC0 A;  5J3X A;  3SJF A;  4P4I A;  5HKW A;  2OOT A;  1EO0 A;  4LQG A;  2N3A B;  3SJG A;  3D7F A;  3U88 C;  2XEF A;  4JZ0 A; 
#chains in the Genus database with same CATH homology
 2XPN A;  2XPO A;  1Z9E A;  3OAK A;  3NFQ A;  3HPG G;  3O8Z A;  2B4J C;  3F9K C;  3HPH E;  2XPP A;  3U88 C;  1EO0 A;  1WJT A;  2XPL A;  2N3A B;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2XPOA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations