2XPPA

Crystal structure of a spt6-iws1(spn1) complex from encephalitozoon cuniculi, form iii
Total Genus 58
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
58
sequence length
137
structure length
137
Chain Sequence
GTVLEISRSLKKRMQDILKKDNANNLEGRPATGKIENVEEISDILMSKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMKIHKEHLVTSGVGKIVYFYSINPKESKEVRASAKALVQKWTNEVFK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title The Structure of an Iws1/Spt6 Complex Reveals an Interaction Domain Conserved in Tfiis, Elongin a and Med26
pubmed doi rcsb
molecule tags Transcription
source organism Encephalitozoon cuniculi
molecule keywords IWS1
total genus 58
structure length 137
sequence length 137
ec nomenclature
pdb deposition date 2010-08-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08711 Med26 TFIIS helical bundle-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.930.10 Mainly Alpha Up-down Bundle Transcription Elongation Factor S-II; Chain A Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 2xppA00
3HPHE 3NFQA 2XPLA 3O8ZA 3OAKA 1WJTA 3U88C 1Z9EA 2XPOA 2N3AB 2XPPA 1EO0A 3HPGG 2B4JC 2XPNA 3F9KC
chains in the Genus database with same CATH superfamily
5BY0A 4OMEA 3O8ZA 3BUMB 3D7GA 1WJTA 4GPLB 1EO0A 3FEEA 3FECA 3OB2B 3SJEA 3D7FA 4BPUB 4BTFA 3VGOA 5D29A 4NGQA 4OC3A 3SJXA 3IWWA 2JBJA 3OB1B 4P45A 5ELYA 1Z8LA 3SJFA 4P4FA 4MCRA 5F09A 3VRNA 4W9YA 4BPWB 2N3AB 2XPPA 4MCSA 5HKZA 2XPNA 4OC2A 2XPLA 4P4BA 4LQGA 4NGSA 4P4IA 4BPXB 4P4JA 3VRRA 3RBUA 3OAKA 4NGNA 2XEJA 2UV8G 4X3RA 5J3XA 4MCPA 3VRQA 3S9MA 3BUNB 4RR2B 3BI0A 3KASA 3S9LA 4NGPA 3BXMA 5HKWA 2Y1NA 3D7DA 2CIJA 3NFQA 4JYWA 4MCQA 4P44A 2C6CA 5AXIA 2C6GA 1B47A 3HMJG 3PFVA 3D7HA 3HPGG 3HPHE 1YVHA 2XEIA 4OC1A 4OC4A 2OOTA 2CBLA 3F9KC 4NGMA 4NGTA 2XEGA 4A4CA 2JBKA 2PVVA 2PVWA 4P4EA 3VRPA 1FBVA 3S9NA 1DE4C 5HKYA 2OR4A 3BUWB 2Y1MA 3FF3A 3BHXA 3OP0A 3PLFB 4OC5A 3BUOB 4A4BA 3U88C 5F13A 1Z9EA 3SJGA 4OC0A 2B4JC 1CX8A 4NGRA 3VROA 4JZ0A 2XEFA 2VKZG 3BI1A 3FEDA 2C6PA 3ZNIA 3BUXB 4P4DA 2XPOA 3PT1A 2DLAA
chains in the Genus database with same CATH topology
3HPHE 3NFQA 2XPLA 3O8ZA 3OAKA 1WJTA 3U88C 1Z9EA 2XPOA 2N3AB 2XPPA 1EO0A 3HPGG 2B4JC 2XPNA 3F9KC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HPH E;  3NFQ A;  2XPL A;  3O8Z A;  3OAK A;  1WJT A;  3U88 C;  1Z9E A;  2XPO A;  2N3A B;  2XPP A;  1EO0 A;  3HPG G;  2B4J C;  2XPN A;  3F9K C; 
#chains in the Genus database with same CATH topology
 5BY0 A;  4OME A;  3O8Z A;  3BUM B;  3D7G A;  1WJT A;  4GPL B;  1EO0 A;  3FEE A;  3FEC A;  3OB2 B;  3SJE A;  3D7F A;  4BPU B;  4BTF A;  3VGO A;  5D29 A;  4NGQ A;  4OC3 A;  3SJX A;  3IWW A;  2JBJ A;  3OB1 B;  4P45 A;  5ELY A;  1Z8L A;  3SJF A;  4P4F A;  4MCR A;  5F09 A;  3VRN A;  4W9Y A;  4BPW B;  2N3A B;  2XPP A;  4MCS A;  5HKZ A;  2XPN A;  4OC2 A;  2XPL A;  4P4B A;  4LQG A;  4NGS A;  4P4I A;  4BPX B;  4P4J A;  3VRR A;  3RBU A;  3OAK A;  4NGN A;  2XEJ A;  2UV8 G;  4X3R A;  5J3X A;  4MCP A;  3VRQ A;  3S9M A;  3BUN B;  4RR2 B;  3BI0 A;  3KAS A;  3S9L A;  4NGP A;  3BXM A;  5HKW A;  2Y1N A;  3D7D A;  2CIJ A;  3NFQ A;  4JYW A;  4MCQ A;  4P44 A;  2C6C A;  5AXI A;  2C6G A;  1B47 A;  3HMJ G;  3PFV A;  3D7H A;  3HPG G;  3HPH E;  1YVH A;  2XEI A;  4OC1 A;  4OC4 A;  2OOT A;  2CBL A;  3F9K C;  4NGM A;  4NGT A;  2XEG A;  4A4C A;  2JBK A;  2PVV A;  2PVW A;  4P4E A;  3VRP A;  1FBV A;  3S9N A;  1DE4 C;  5HKY A;  2OR4 A;  3BUW B;  2Y1M A;  3FF3 A;  3BHX A;  3OP0 A;  3PLF B;  4OC5 A;  3BUO B;  4A4B A;  3U88 C;  5F13 A;  1Z9E A;  3SJG A;  4OC0 A;  2B4J C;  1CX8 A;  4NGR A;  3VRO A;  4JZ0 A;  2XEF A;  2VKZ G;  3BI1 A;  3FED A;  2C6P A;  3ZNI A;  3BUX B;  4P4D A;  2XPO A;  3PT1 A;  2DLA A; 
#chains in the Genus database with same CATH homology
 3HPH E;  3NFQ A;  2XPL A;  3O8Z A;  3OAK A;  1WJT A;  3U88 C;  1Z9E A;  2XPO A;  2N3A B;  2XPP A;  1EO0 A;  3HPG G;  2B4J C;  2XPN A;  3F9K C; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...