3F9K | Genus

Total Genus 33

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	33
sequence length	94
structure length	94
Chain Sequence	SMDSRLQRIHAEIKNSLKIDNLDVNRCIEALDELASLQVTMQQAQKHTEMITTLKKIRRFKVSQVIMEKSTMLYNKFKNMFLVGEGDSVLEVLF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 94 atoms

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94 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Viral protein, recombination
source organism	Human immunodeficiency virus type 2
publication title	A novel co-crystal structure affords the design of gain-of-function lentiviral integrase mutants in the presence of modified PSIP1/LEDGF/p75 pubmed doi rcsb
molecule keywords	Integrase
total genus	33
structure length	94
sequence length	94
chains with identical sequence	G, K, O, S, W, a, e, i, m, q, u
ec nomenclature
pdb deposition date	2008-11-14

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.930.10	Mainly Alpha	Up-down Bundle	Transcription Elongation Factor S-II; Chain A	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	3f9kC00

1EO0A 3NFQA 3HPGG 2XPOA 3U88C 2N3AB 1Z9EA 2XPPA 3OAKA 2XPNA 3O8ZA 3F9KC 3HPHE 2XPLA 2B4JC 1WJTA
chains in the Genus database with same CATH superfamily

4P4FA 3BXMA 4NGQA 3S9NA 1Z9EA 4OC2A 4MCQA 3VRPA 3BHXA 4RR2B 3BUMB 3U88C 2OR4A 1YVHA 4MCRA 2PVWA 3ZNIA 3D7DA 4BPUB 3VRRA 3FF3A 2CBLA 4A4BA 3IWWA 3VRNA 2C6CA 1FBVA 4BPWB 3PFVA 3PLFB 3HPHE 1WJTA 3BUNB 3S9LA 5ELYA 2JBJA 2N3AB 2XEJA 5AXIA 3OB2B 4P4BA 4X3RA 3SJFA 2C6PA 1Z8LA 4BPXB 5BY0A 3BI0A 4NGPA 3D7HA 5F13A 3VRQA 4P4DA 4NGRA 2PVVA 3F9KC 4JZ0A 2OOTA 3HMJG 3KASA 4OC1A 3RBUA 3VGOA 3OAKA 3BUOB 4NGTA 4NGSA 4P4IA 5HKZA 4P4EA 3SJXA 4NGNA 2Y1MA 3OP0A 2C6GA 4GPLB 2Y1NA 4P4JA 3SJEA 5J3XA 4P44A 2CIJA 4LQGA 4MCSA 2DLAA 5HKWA 3FECA 5D29A 4JYWA 1DE4C 2XPNA 3O8ZA 3SJGA 3D7GA 3BUWB 2VKZG 4BTFA 4OMEA 5F09A 1CX8A 1EO0A 2XEFA 3FEDA 4OC4A 3VROA 2JBKA 4NGMA 4W9YA 3BI1A 3NFQA 2XEGA 5HKYA 4OC0A 3S9MA 2XEIA 3D7FA 3BUXB 4OC3A 3OB1B 2B4JC 4P45A 4MCPA 3PT1A 3HPGG 2XPOA 4OC5A 2UV8G 4A4CA 1B47A 2XPLA 2XPPA 3FEEA
chains in the Genus database with same CATH topology

1EO0A 3NFQA 3HPGG 2XPOA 3U88C 2N3AB 1Z9EA 2XPPA 3OAKA 2XPNA 3O8ZA 3F9KC 3HPHE 2XPLA 2B4JC 1WJTA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1EO0 A;  3NFQ A;  3HPG G;  2XPO A;  3U88 C;  2N3A B;  1Z9E A;  2XPP A;  3OAK A;  2XPN A;  3O8Z A;  3F9K C;  3HPH E;  2XPL A;  2B4J C;  1WJT A; 
#chains in the Genus database with same CATH topology
 4P4F A;  3BXM A;  4NGQ A;  3S9N A;  1Z9E A;  4OC2 A;  4MCQ A;  3VRP A;  3BHX A;  4RR2 B;  3BUM B;  3U88 C;  2OR4 A;  1YVH A;  4MCR A;  2PVW A;  3ZNI A;  3D7D A;  4BPU B;  3VRR A;  3FF3 A;  2CBL A;  4A4B A;  3IWW A;  3VRN A;  2C6C A;  1FBV A;  4BPW B;  3PFV A;  3PLF B;  3HPH E;  1WJT A;  3BUN B;  3S9L A;  5ELY A;  2JBJ A;  2N3A B;  2XEJ A;  5AXI A;  3OB2 B;  4P4B A;  4X3R A;  3SJF A;  2C6P A;  1Z8L A;  4BPX B;  5BY0 A;  3BI0 A;  4NGP A;  3D7H A;  5F13 A;  3VRQ A;  4P4D A;  4NGR A;  2PVV A;  3F9K C;  4JZ0 A;  2OOT A;  3HMJ G;  3KAS A;  4OC1 A;  3RBU A;  3VGO A;  3OAK A;  3BUO B;  4NGT A;  4NGS A;  4P4I A;  5HKZ A;  4P4E A;  3SJX A;  4NGN A;  2Y1M A;  3OP0 A;  2C6G A;  4GPL B;  2Y1N A;  4P4J A;  3SJE A;  5J3X A;  4P44 A;  2CIJ A;  4LQG A;  4MCS A;  2DLA A;  5HKW A;  3FEC A;  5D29 A;  4JYW A;  1DE4 C;  2XPN A;  3O8Z A;  3SJG A;  3D7G A;  3BUW B;  2VKZ G;  4BTF A;  4OME A;  5F09 A;  1CX8 A;  1EO0 A;  2XEF A;  3FED A;  4OC4 A;  3VRO A;  2JBK A;  4NGM A;  4W9Y A;  3BI1 A;  3NFQ A;  2XEG A;  5HKY A;  4OC0 A;  3S9M A;  2XEI A;  3D7F A;  3BUX B;  4OC3 A;  3OB1 B;  2B4J C;  4P45 A;  4MCP A;  3PT1 A;  3HPG G;  2XPO A;  4OC5 A;  2UV8 G;  4A4C A;  1B47 A;  2XPL A;  2XPP A;  3FEE A; 
#chains in the Genus database with same CATH homology
 1EO0 A;  3NFQ A;  3HPG G;  2XPO A;  3U88 C;  2N3A B;  1Z9E A;  2XPP A;  3OAK A;  2XPN A;  3O8Z A;  3F9K C;  3HPH E;  2XPL A;  2B4J C;  1WJT A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3F9KC

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization