3PT1 | Genus

Total Genus 186

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	186
sequence length	469
structure length	464
Chain Sequence	HMTIPGRFMTIDKGTFGEYTASTRWPIIIQNAIDDLSKHQETEKSNGTKFEQGEVIKKELKEFRQEIIDRVPLRPFTEEEIKIANVPLSFNEYLKKHPEVNWGAVEWLFSEVYLYRRVNVLFQRQCEWAKFDIFNRLKQSTFESSFYGVVELALRYENLLPQLREMKQNDDILKVLFKEFIEISLWGNATDLSLLTNATLEDIKSIQGAKARAASESKIVVNDTEKAWEVLTKARADANSREIRVDFVLDNSGFELYADLMLAAFLLQSGLATKCIFHAKDIPYMVSDVMLKDFDILVHDLRDREFFPSGEPSTKESRALDLFAGEMEKFVSSGKIEFREDSFWTTELDYWNLDANETKYHGSILHKDLQKSNLVIFKGDLNYRKLTGDRKWPRTTKWETAIGPLATNGITSLSLRTCKADVQVALPEGLDAKLSQEWEKENPGRGSWWCCSGKWAVICFCSGI

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Hydrolase
source organism	Saccharomyces cerevisiae
publication title	Structure and activity of a DUF89 protein from Saccharomyces cerevisiae revealed a novel family of carbohydrate phosphatases rcsb
molecule keywords	UPF0364 protein YMR027W
total genus	186
structure length	464
sequence length	469
ec nomenclature
pdb deposition date	2010-12-02

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01937	DUF89	Protein of unknown function DUF89

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.930.60	Mainly Alpha	Up-down Bundle	Transcription Elongation Factor S-II; Chain A	Transcription Elongation Factor S-II; Chain A	3pt1A02

3PT1A 5F13A 5BY0A
chains in the Genus database with same CATH superfamily

2DLAA 1EO0A 4P4DA 4OC3A 3VRPA 3BXMA 5HKWA 5HKYA 5F09A 2XPNA 4MCPA 3IWWA 5D29A 1FBVA 3ZNIA 2CIJA 1CX8A 4NGQA 3U88C 3F9KC 5BY0A 3OAKA 3OB1B 3SJXA 2VKZG 4OC5A 3OP0A 4NGPA 5F13A 2C6CA 3VRNA 3FF3A 4NGTA 4P4JA 4MCSA 5J3XA 1YVHA 3S9LA 4OC1A 3FEEA 4NGRA 3S9NA 3RBUA 3PFVA 4X3RA 1DE4C 4JZ0A 4NGNA 3VRQA 4OC0A 4P4EA 4BPWB 3VROA 4RR2B 3O8ZA 4A4BA 4A4CA 2XPOA 3SJEA 2XEFA 3BI0A 4GPLB 4BPUB 2Y1NA 3BUWB 4JYWA 3HPHE 3BUXB 1Z8LA 2XPLA 5AXIA 2JBKA 4P4IA 2B4JC 3NFQA 1WJTA 4BTFA 3D7FA 2XEJA 2UV8G 4NGMA 3VGOA 3VRRA 2Y1MA 2N3AB 2XEIA 3KASA 4OMEA 2PVVA 3BUMB 1Z9EA 4P45A 4OC4A 4MCQA 1B47A 3FEDA 3PT1A 3D7DA 4W9YA 5HKZA 3BI1A 4P4BA 3BHXA 4NGSA 3D7HA 3SJFA 2PVWA 4P4FA 4LQGA 4OC2A 2C6GA 4BPXB 3FECA 3SJGA 4P44A 3OB2B 3HPGG 3BUOB 3D7GA 2XPPA 2OR4A 2OOTA 2CBLA 3PLFB 2C6PA 4MCRA 2JBJA 2XEGA 3S9MA 3BUNB 3HMJG 5ELYA
chains in the Genus database with same CATH topology

4BPUB 2DLAA 5BY0A 4RR2B 3PT1A 3HMJG 2VKZG 5F13A 4BPWB 2UV8G 4BPXB
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3PT1 A;  5F13 A;  5BY0 A; 
#chains in the Genus database with same CATH topology
 2DLA A;  1EO0 A;  4P4D A;  4OC3 A;  3VRP A;  3BXM A;  5HKW A;  5HKY A;  5F09 A;  2XPN A;  4MCP A;  3IWW A;  5D29 A;  1FBV A;  3ZNI A;  2CIJ A;  1CX8 A;  4NGQ A;  3U88 C;  3F9K C;  5BY0 A;  3OAK A;  3OB1 B;  3SJX A;  2VKZ G;  4OC5 A;  3OP0 A;  4NGP A;  5F13 A;  2C6C A;  3VRN A;  3FF3 A;  4NGT A;  4P4J A;  4MCS A;  5J3X A;  1YVH A;  3S9L A;  4OC1 A;  3FEE A;  4NGR A;  3S9N A;  3RBU A;  3PFV A;  4X3R A;  1DE4 C;  4JZ0 A;  4NGN A;  3VRQ A;  4OC0 A;  4P4E A;  4BPW B;  3VRO A;  4RR2 B;  3O8Z A;  4A4B A;  4A4C A;  2XPO A;  3SJE A;  2XEF A;  3BI0 A;  4GPL B;  4BPU B;  2Y1N A;  3BUW B;  4JYW A;  3HPH E;  3BUX B;  1Z8L A;  2XPL A;  5AXI A;  2JBK A;  4P4I A;  2B4J C;  3NFQ A;  1WJT A;  4BTF A;  3D7F A;  2XEJ A;  2UV8 G;  4NGM A;  3VGO A;  3VRR A;  2Y1M A;  2N3A B;  2XEI A;  3KAS A;  4OME A;  2PVV A;  3BUM B;  1Z9E A;  4P45 A;  4OC4 A;  4MCQ A;  1B47 A;  3FED A;  3PT1 A;  3D7D A;  4W9Y A;  5HKZ A;  3BI1 A;  4P4B A;  3BHX A;  4NGS A;  3D7H A;  3SJF A;  2PVW A;  4P4F A;  4LQG A;  4OC2 A;  2C6G A;  4BPX B;  3FEC A;  3SJG A;  4P44 A;  3OB2 B;  3HPG G;  3BUO B;  3D7G A;  2XPP A;  2OR4 A;  2OOT A;  2CBL A;  3PLF B;  2C6P A;  4MCR A;  2JBJ A;  2XEG A;  3S9M A;  3BUN B;  3HMJ G;  5ELY A; 
#chains in the Genus database with same CATH homology
 4BPU B;  2DLA A;  5BY0 A;  4RR2 B;  3PT1 A;  3HMJ G;  2VKZ G;  5F13 A;  4BPW B;  2UV8 G;  4BPX B;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3PT1A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations