The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
50
|
sequence length |
217
|
structure length |
181
|
Chain Sequence |
ISLIEFENLAIDRVKLLKSVENLSKLESELRKLRRDHISHFILRLAYCQSEELRRWFIQQEMDLLRFRFSILPKDKIQDFLKDSQLQFEAISDEEKTLREQEIVASSPSLLGFESIYKIPFADALDLFRGRKVYLEDGFAYVPLKDIVAIILNEFRAKLSKALALTARSLDERLQPLLNHL
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structures of Human Primase Reveal Design of Nucleotide Elongation Site and Mode of Pol Alpha Tethering
pubmed doi rcsb |
| molecule tags |
Transferase
|
| source organism |
Homo sapiens
|
| molecule keywords |
DNA PRIMASE SMALL SUBUNIT
|
| total genus |
50
|
| structure length |
181
|
| sequence length |
217
|
| chains with identical sequence |
D
|
| ec nomenclature |
ec
2.7.7.-: |
| pdb deposition date | 2013-05-28 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Transcription Elongation Factor S-II; Chain A | Transcription Elongation Factor S-II; Chain A |
#chains in the Genus database with same CATH superfamily 4BPX B; 4BPW B; 4RR2 B; 4BPU B; #chains in the Genus database with same CATH topology 5BY0 A; 3SJF A; 3BI0 A; 4GPL B; 5HKY A; 4P4B A; 3VRP A; 4W9Y A; 3SJX A; 4BPX B; 3PFV A; 3FEC A; 2N3A B; 2XPN A; 3HPG G; 3PT1 A; 4MCQ A; 3HPH E; 3F9K C; 4NGT A; 5HKW A; 2C6C A; 4P4I A; 5ELY A; 4OC4 A; 4A4C A; 4OC2 A; 3BUW B; 4NGS A; 3U88 C; 2CBL A; 3FEE A; 3S9M A; 2JBJ A; 4P4D A; 3O8Z A; 2XPP A; 4RR2 B; 3D7H A; 3OP0 A; 4P45 A; 4JYW A; 4P44 A; 4P4F A; 4X3R A; 5AXI A; 3SJG A; 3VRN A; 1Z8L A; 3BUO B; 3FED A; 4NGM A; 3PLF B; 3KAS A; 3VGO A; 2Y1M A; 1WJT A; 3VRR A; 4MCP A; 4OC0 A; 1DE4 C; 1CX8 A; 3IWW A; 4NGN A; 3BUM B; 4OC3 A; 4BPW B; 4A4B A; 2VKZ G; 3D7G A; 2Y1N A; 5D29 A; 1B47 A; 3S9N A; 3BHX A; 2C6P A; 3BXM A; 3NFQ A; 2CIJ A; 1FBV A; 4LQG A; 4OC5 A; 2XEF A; 5J3X A; 4P4E A; 2XPL A; 3D7D A; 3BUN B; 2XEJ A; 3ZNI A; 2B4J C; 2JBK A; 3VRO A; 4MCR A; 3OB2 B; 2PVV A; 2DLA A; 3VRQ A; 2XEI A; 4BTF A; 3BUX B; 2XEG A; 5F09 A; 3OB1 B; 4MCS A; 3D7F A; 3RBU A; 1YVH A; 2C6G A; 1EO0 A; 4NGR A; 2PVW A; 2UV8 G; 3HMJ G; 1Z9E A; 5F13 A; 2OR4 A; 4JZ0 A; 4NGQ A; 4NGP A; 4P4J A; 3BI1 A; 3FF3 A; 5HKZ A; 2OOT A; 2XPO A; 4BPU B; 4OC1 A; 4OME A; 3SJE A; 3S9L A; 3OAK A; #chains in the Genus database with same CATH homology 4BPU B; 5F13 A; 5BY0 A; 3HMJ G; 3PT1 A; 2DLA A; 4BPW B; 2VKZ G; 4BPX B; 4RR2 B; 2UV8 G;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
