5BY0 | Genus

Total Genus 190

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	190
sequence length	470
structure length	465
Chain Sequence	GHMTIPGRFMTIDKGTFGEYTASTRWPIIIQNAIDDLSKHQETEKSNGTKFEQGEVIKKELKEFRQEIIDRVPLRPFTEEEIKIANVPLSFNEYLKKHPEVNWGAVEWLFSEVYLYRRVNVLFQRQCEWAKFDIFNRLKQSTFESSFYGVVELALRYENLLPQLREMKQNDDILKVLFKEFIEISLWGNATDLSLLTNATLEDIKSIQGAKARAASESKIVVNDTEKAWEVLTKARADANSREIRVDFVLDNSGFELYADLMLAAFLLQSGLATKCIFHAKDIPYMVSDVMLKDFDILVHDLRDREFFPSGEPSTKESRALDLFAGEMEKFVSSGKIEFREDSFWTTELDYWNLDANETKYHGSILHKDLQKSNLVIFKGDLNYRKLTGDRKWPRTTKWETAIGPLATNGITSLSLRTCKADVQVALPEGLDAKLSQEWEKENPGRGSWWCCSGKWAVICFCSGI

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 465 atoms

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465 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Transferase
source organism	Saccharomyces cerevisiae (strain atcc 204508 / s288c)
publication title	Crystal structure of magnesium-bound Duf89 protein Saccharomyces cerevisiae rcsb
molecule keywords	Protein-glutamate O-methyltransferase
total genus	190
structure length	465
sequence length	470
ec nomenclature	ec 2.1.1.-:
pdb deposition date	2015-06-09

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01937	DUF89	Protein of unknown function DUF89

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.930.60	Mainly Alpha	Up-down Bundle	Transcription Elongation Factor S-II; Chain A	Transcription Elongation Factor S-II; Chain A	5by0A02

3PT1A 5F13A 5BY0A
chains in the Genus database with same CATH superfamily

4P45A 4RR2B 3SJFA 4OC1A 5D29A 4MCRA 2XEJA 3ZNIA 2XPLA 2JBJA 3VRQA 3SJGA 3BUWB 4OMEA 4OC5A 2C6GA 3O8ZA 3HPGG 4P4FA 3BUXB 2UV8G 4MCSA 2Y1MA 3VROA 4BTFA 1CX8A 4JZ0A 4JYWA 2PVWA 5J3XA 4NGSA 4X3RA 1EO0A 3SJXA 4BPUB 4P4JA 4BPXB 3KASA 3SJEA 2C6PA 5HKYA 1YVHA 4MCPA 2N3AB 4NGRA 5F13A 2OOTA 3S9NA 3D7GA 1DE4C 3PLFB 3F9KC 3BUMB 2JBKA 4NGPA 4A4CA 3VRRA 4BPWB 3FEEA 3BXMA 3D7HA 4NGNA 2Y1NA 2CBLA 2B4JC 3OP0A 3BI1A 4OC0A 3BHXA 2VKZG 1B47A 2XPOA 1FBVA 3D7DA 4P4IA 5F09A 1WJTA 3FF3A 4OC4A 3PFVA 4A4BA 3D7FA 3FEDA 3HMJG 5HKWA 5AXIA 1Z8LA 3OAKA 4NGMA 4OC2A 3VRNA 3BUOB 4MCQA 3NFQA 4OC3A 4GPLB 4W9YA 2PVVA 3OB2B 3OB1B 3IWWA 2XEGA 3VRPA 5BY0A 2C6CA 4P4EA 1Z9EA 2XEIA 3S9MA 2XEFA 4LQGA 4P4DA 3RBUA 3BI0A 4P44A 2XPNA 5HKZA 4P4BA 3U88C 3HPHE 3FECA 3S9LA 2DLAA 4NGTA 2CIJA 3VGOA 4NGQA 2XPPA 3PT1A 3BUNB 5ELYA 2OR4A
chains in the Genus database with same CATH topology

3PT1A 5BY0A 2UV8G 4RR2B 2DLAA 2VKZG 4BPWB 4BPUB 4BPXB 5F13A 3HMJG
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3PT1 A;  5F13 A;  5BY0 A; 
#chains in the Genus database with same CATH topology
 4P45 A;  4RR2 B;  3SJF A;  4OC1 A;  5D29 A;  4MCR A;  2XEJ A;  3ZNI A;  2XPL A;  2JBJ A;  3VRQ A;  3SJG A;  3BUW B;  4OME A;  4OC5 A;  2C6G A;  3O8Z A;  3HPG G;  4P4F A;  3BUX B;  2UV8 G;  4MCS A;  2Y1M A;  3VRO A;  4BTF A;  1CX8 A;  4JZ0 A;  4JYW A;  2PVW A;  5J3X A;  4NGS A;  4X3R A;  1EO0 A;  3SJX A;  4BPU B;  4P4J A;  4BPX B;  3KAS A;  3SJE A;  2C6P A;  5HKY A;  1YVH A;  4MCP A;  2N3A B;  4NGR A;  5F13 A;  2OOT A;  3S9N A;  3D7G A;  1DE4 C;  3PLF B;  3F9K C;  3BUM B;  2JBK A;  4NGP A;  4A4C A;  3VRR A;  4BPW B;  3FEE A;  3BXM A;  3D7H A;  4NGN A;  2Y1N A;  2CBL A;  2B4J C;  3OP0 A;  3BI1 A;  4OC0 A;  3BHX A;  2VKZ G;  1B47 A;  2XPO A;  1FBV A;  3D7D A;  4P4I A;  5F09 A;  1WJT A;  3FF3 A;  4OC4 A;  3PFV A;  4A4B A;  3D7F A;  3FED A;  3HMJ G;  5HKW A;  5AXI A;  1Z8L A;  3OAK A;  4NGM A;  4OC2 A;  3VRN A;  3BUO B;  4MCQ A;  3NFQ A;  4OC3 A;  4GPL B;  4W9Y A;  2PVV A;  3OB2 B;  3OB1 B;  3IWW A;  2XEG A;  3VRP A;  5BY0 A;  2C6C A;  4P4E A;  1Z9E A;  2XEI A;  3S9M A;  2XEF A;  4LQG A;  4P4D A;  3RBU A;  3BI0 A;  4P44 A;  2XPN A;  5HKZ A;  4P4B A;  3U88 C;  3HPH E;  3FEC A;  3S9L A;  2DLA A;  4NGT A;  2CIJ A;  3VGO A;  4NGQ A;  2XPP A;  3PT1 A;  3BUN B;  5ELY A;  2OR4 A; 
#chains in the Genus database with same CATH homology
 3PT1 A;  5BY0 A;  2UV8 G;  4RR2 B;  2DLA A;  2VKZ G;  4BPW B;  4BPU B;  4BPX B;  5F13 A;  3HMJ G;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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5BY0A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations