5BY0A

Crystal structure of magnesium-bound duf89 protein saccharomyces cerevisiae
Total Genus 190
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
190
sequence length
470
structure length
465
Chain Sequence
GHMTIPGRFMTIDKGTFGEYTASTRWPIIIQNAIDDLSKHQETEKSNGTKFEQGEVIKKELKEFRQEIIDRVPLRPFTEEEIKIANVPLSFNEYLKKHPEVNWGAVEWLFSEVYLYRRVNVLFQRQCEWAKFDIFNRLKQSTFESSFYGVVELALRYENLLPQLREMKQNDDILKVLFKEFIEISLWGNATDLSLLTNATLEDIKSIQGAKARAASESKIVVNDTEKAWEVLTKARADANSREIRVDFVLDNSGFELYADLMLAAFLLQSGLATKCIFHAKDIPYMVSDVMLKDFDILVHDLRDREFFPSGEPSTKESRALDLFAGEMEKFVSSGKIEFREDSFWTTELDYWNLDANETKYHGSILHKDLQKSNLVIFKGDLNYRKLTGDRKWPRTTKWETAIGPLATNGITSLSLRTCKADVQVALPEGLDAKLSQEWEKENPGRGSWWCCSGKWAVICFCSGI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal structure of magnesium-bound Duf89 protein Saccharomyces cerevisiae
rcsb
molecule tags Transferase
source organism Saccharomyces cerevisiae (strain atcc 204508 / s288c)
molecule keywords Protein-glutamate O-methyltransferase
total genus 190
structure length 465
sequence length 470
ec nomenclature ec 2.1.1.-:
pdb deposition date 2015-06-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01937 DUF89 Protein of unknown function DUF89
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.930.60 Mainly Alpha Up-down Bundle Transcription Elongation Factor S-II; Chain A Transcription Elongation Factor S-II; Chain A 5by0A02
3PT1A 5F13A 5BY0A
chains in the Genus database with same CATH superfamily
5D29A 2C6GA 4P4DA 1WJTA 4MCSA 2PVVA 3KASA 1B47A 4LQGA 3BI1A 2JBJA 2DLAA 2VKZG 2XEIA 4BPUB 2JBKA 3BUWB 3PFVA 4BPWB 2C6PA 4A4CA 3HMJG 3VRPA 3BUOB 3D7GA 3SJXA 3VRQA 3SJEA 1Z8LA 3BI0A 4MCPA 4OC2A 3U88C 4P4EA 4P44A 2CBLA 4NGSA 3S9NA 1Z9EA 3OP0A 5HKWA 2Y1NA 2B4JC 3OB2B 5HKYA 4P4BA 3VROA 4OC5A 2XEJA 3FEDA 4JYWA 3BHXA 3PLFB 4MCQA 4NGQA 3FEEA 4NGMA 4P4JA 2UV8G 1YVHA 3D7FA 2XEGA 2OOTA 3OAKA 3VGOA 3VRRA 3NFQA 4NGRA 4BPXB 5F13A 4BTFA 2XPPA 4GPLB 3D7HA 5BY0A 4P4IA 4P45A 4NGNA 4OC3A 3S9MA 3BUMB 2N3AB 4NGTA 2XPNA 3BXMA 1CX8A 4OC4A 3BUNB 5ELYA 2Y1MA 2C6CA 5F09A 3OB1B 3SJFA 4NGPA 3O8ZA 2OR4A 5HKZA 2XPOA 3ZNIA 3F9KC 4MCRA 5AXIA 3FECA 3PT1A 4OC1A 1EO0A 1FBVA 3D7DA 3S9LA 3IWWA 4OMEA 4JZ0A 5J3XA 2XPLA 2CIJA 3FF3A 3VRNA 4OC0A 4W9YA 3HPHE 4P4FA 3RBUA 1DE4C 3HPGG 4X3RA 2PVWA 4RR2B 2XEFA 3BUXB 3SJGA 4A4BA
chains in the Genus database with same CATH topology
2DLAA 4RR2B 5BY0A 2VKZG 4BPUB 4BPXB 5F13A 4BPWB 2UV8G 3PT1A 3HMJG
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3PT1 A;  5F13 A;  5BY0 A; 
#chains in the Genus database with same CATH topology
 5D29 A;  2C6G A;  4P4D A;  1WJT A;  4MCS A;  2PVV A;  3KAS A;  1B47 A;  4LQG A;  3BI1 A;  2JBJ A;  2DLA A;  2VKZ G;  2XEI A;  4BPU B;  2JBK A;  3BUW B;  3PFV A;  4BPW B;  2C6P A;  4A4C A;  3HMJ G;  3VRP A;  3BUO B;  3D7G A;  3SJX A;  3VRQ A;  3SJE A;  1Z8L A;  3BI0 A;  4MCP A;  4OC2 A;  3U88 C;  4P4E A;  4P44 A;  2CBL A;  4NGS A;  3S9N A;  1Z9E A;  3OP0 A;  5HKW A;  2Y1N A;  2B4J C;  3OB2 B;  5HKY A;  4P4B A;  3VRO A;  4OC5 A;  2XEJ A;  3FED A;  4JYW A;  3BHX A;  3PLF B;  4MCQ A;  4NGQ A;  3FEE A;  4NGM A;  4P4J A;  2UV8 G;  1YVH A;  3D7F A;  2XEG A;  2OOT A;  3OAK A;  3VGO A;  3VRR A;  3NFQ A;  4NGR A;  4BPX B;  5F13 A;  4BTF A;  2XPP A;  4GPL B;  3D7H A;  5BY0 A;  4P4I A;  4P45 A;  4NGN A;  4OC3 A;  3S9M A;  3BUM B;  2N3A B;  4NGT A;  2XPN A;  3BXM A;  1CX8 A;  4OC4 A;  3BUN B;  5ELY A;  2Y1M A;  2C6C A;  5F09 A;  3OB1 B;  3SJF A;  4NGP A;  3O8Z A;  2OR4 A;  5HKZ A;  2XPO A;  3ZNI A;  3F9K C;  4MCR A;  5AXI A;  3FEC A;  3PT1 A;  4OC1 A;  1EO0 A;  1FBV A;  3D7D A;  3S9L A;  3IWW A;  4OME A;  4JZ0 A;  5J3X A;  2XPL A;  2CIJ A;  3FF3 A;  3VRN A;  4OC0 A;  4W9Y A;  3HPH E;  4P4F A;  3RBU A;  1DE4 C;  3HPG G;  4X3R A;  2PVW A;  4RR2 B;  2XEF A;  3BUX B;  3SJG A;  4A4B A; 
#chains in the Genus database with same CATH homology
 2DLA A;  4RR2 B;  5BY0 A;  2VKZ G;  4BPU B;  4BPX B;  5F13 A;  4BPW B;  2UV8 G;  3PT1 A;  3HMJ G; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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