2A1FA

Crystal structure of uridylate kinase
Total Genus 82

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
82
sequence length
239
structure length
232
Chain Sequence
LSQPIYKRILLKLSGEALQGEDGLGIDPAILDRMAVEIKELVEMGVEVSVVLGGGNLFRGAKLAKAGMNRVVGDHMGMLATVMNGLAMRDSLFRADVNAKLMSAFQLNGICDTYNWSEAIKMLREKRVVIFSAGTGNPFFTTDSTACLRGIEIEADVVLKATKVDGVYDCAKLYKNLSYAEVIDKELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTICEG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV5 (216-219)AH7 (199-208)TVIII1 (6-9)S2 (47-52)3H1 (15-18)TI1 (20-23)TI2 (54-57)AH1 (28-44)S8 (212-216)TI3 (55-58)AH3 (70-95)TIV2 (137-140)TII'1 (133-136)TII1 (107-110)S5 (128-132)S3 (99-103)TVIII2 (103-106)TIV1 (108-111)S4 (112-113)AH8 (222-228)S7 (183-185)TIV4 (169-179)AH6 (186-192)TII2 (219-222)AH5 (142-153)S1 (8-13)AH2 (60-66)S6 (157-162)TIV3 (168-178)AH4 (116-125)Updating...
connected with : NaN
publication title Crystal Structure of Uridylate kinase
rcsb
molecule keywords Uridylate kinase
molecule tags Transferase
source organism Haemophilus influenzae
total genus 82
structure length 232
sequence length 239
chains with identical sequence B, C, D, E, F
ec nomenclature ec 2.7.4.22: UMP kinase.
pdb deposition date 2005-06-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 2a1fA00
2WE4A 3ZZGA 3AB4A 2BNDA 4I49A 3S6HA 3ZZHA 2BNFA 4Q1TA 4KZTA 4USJA 3S6GA 4OLCA 3C1NA 3B8GA 3AB2A 2BNEA 3QVFA 3D2MA 1GS5A 2W21A 4A7WA 3QURA 4NDPB 3D2PA 1YBDA 2JJXA 3WWMA 4NDOA 3EK6A 3QVHA 3C1MA 3C20A 3L76A 3L86A 2IJ9A 3AAWA 2E9YA 2BUFA 2J5TA 2R98A 3LL9A 3WWNA 2VA1A 4JZ9A 2BTYA 3LL5A 2X2WA 2JI5A 4NDRA 3K56A 3U6UA 1OH9A 4JZ7A 3QUNA 2WE5A 2V4YA 3NWYA 4AB7A 2RD5A 1OHAA 2J4JA 3EK5A 3ZZIA 4NDOB 4AXSA 2AP9A 2A1FA 3K4YA 3T7BA 3D40A 4A7XA 2OGXA 2V5HA 2HMFA 4F6TA 3D41A 2R8VA 2WXBA 3ZZFA 4NDQA 2J5VA 1E19A 4NDQB 3TVIA 2J4KA 2BRIA 2J4LA 3QUOA 4NDRB 2J0WA 2J0XA 2JJ4A 4JZ8A 3KZFA 3K4OA 1B7BA 2CDQA 1OHBA 3K52A 2BRXA 1GSJA 2AKOA 2BMUA 4NDPA 2OGXB 3LKKA 4F6TB 3S6KA 1Z9DA
chains in the Genus database with same CATH superfamily
2WE4A 3ZZGA 3AB4A 2BNDA 4I49A 3S6HA 3ZZHA 2BNFA 4Q1TA 4KZTA 4USJA 3S6GA 4OLCA 3C1NA 3B8GA 3AB2A 2BNEA 3QVFA 3D2MA 1GS5A 2W21A 4A7WA 3QURA 4NDPB 3D2PA 1YBDA 2JJXA 3WWMA 4NDOA 3EK6A 3QVHA 3C1MA 3C20A 3L76A 3L86A 2IJ9A 3AAWA 2E9YA 2BUFA 2J5TA 2R98A 3LL9A 3WWNA 2VA1A 4JZ9A 2BTYA 3LL5A 2X2WA 2JI5A 4NDRA 3K56A 3U6UA 1OH9A 4JZ7A 3QUNA 2WE5A 2V4YA 3NWYA 4AB7A 2RD5A 1OHAA 2J4JA 3EK5A 3ZZIA 4NDOB 4AXSA 2AP9A 2A1FA 3K4YA 3T7BA 3D40A 4A7XA 2OGXA 2V5HA 2HMFA 4F6TA 3D41A 2R8VA 2WXBA 3ZZFA 4NDQA 2J5VA 1E19A 4NDQB 3TVIA 2J4KA 2BRIA 2J4LA 3QUOA 4NDRB 2J0WA 2J0XA 2JJ4A 4JZ8A 3KZFA 3K4OA 1B7BA 2CDQA 1OHBA 3K52A 2BRXA 1GSJA 2AKOA 2BMUA 4NDPA 2OGXB 3LKKA 4F6TB 3S6KA 1Z9DA
chains in the Genus database with same CATH topology
2WE4A 3ZZGA 3AB4A 2BNDA 4I49A 3S6HA 3ZZHA 2BNFA 4Q1TA 4KZTA 4USJA 3S6GA 4OLCA 3C1NA 3B8GA 3AB2A 2BNEA 3QVFA 3D2MA 1GS5A 2W21A 4A7WA 3QURA 4NDPB 3D2PA 1YBDA 2JJXA 3WWMA 4NDOA 3EK6A 3QVHA 3C1MA 3C20A 3L76A 3L86A 2IJ9A 3AAWA 2E9YA 2BUFA 2J5TA 2R98A 3LL9A 3WWNA 2VA1A 4JZ9A 2BTYA 3LL5A 2X2WA 2JI5A 4NDRA 3K56A 3U6UA 1OH9A 4JZ7A 3QUNA 2WE5A 2V4YA 3NWYA 4AB7A 2RD5A 1OHAA 2J4JA 3EK5A 3ZZIA 4NDOB 4AXSA 2AP9A 2A1FA 3K4YA 3T7BA 3D40A 4A7XA 2OGXA 2V5HA 2HMFA 4F6TA 3D41A 2R8VA 2WXBA 3ZZFA 4NDQA 2J5VA 1E19A 4NDQB 3TVIA 2J4KA 2BRIA 2J4LA 3QUOA 4NDRB 2J0WA 2J0XA 2JJ4A 4JZ8A 3KZFA 3K4OA 1B7BA 2CDQA 1OHBA 3K52A 2BRXA 1GSJA 2AKOA 2BMUA 4NDPA 2OGXB 3LKKA 4F6TB 3S6KA 1Z9DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2WE4 A;  3ZZG A;  3AB4 A;  2BND A;  4I49 A;  3S6H A;  3ZZH A;  2BNF A;  4Q1T A;  4KZT A;  4USJ A;  3S6G A;  4OLC A;  3C1N A;  3B8G A;  3AB2 A;  2BNE A;  3QVF A;  3D2M A;  1GS5 A;  2W21 A;  4A7W A;  3QUR A;  4NDP B;  3D2P A;  1YBD A;  2JJX A;  3WWM A;  4NDO A;  3EK6 A;  3QVH A;  3C1M A;  3C20 A;  3L76 A;  3L86 A;  2IJ9 A;  3AAW A;  2E9Y A;  2BUF A;  2J5T A;  2R98 A;  3LL9 A;  3WWN A;  2VA1 A;  4JZ9 A;  2BTY A;  3LL5 A;  2X2W A;  2JI5 A;  4NDR A;  3K56 A;  3U6U A;  1OH9 A;  4JZ7 A;  3QUN A;  2WE5 A;  2V4Y A;  3NWY A;  4AB7 A;  2RD5 A;  1OHA A;  2J4J A;  3EK5 A;  3ZZI A;  4NDO B;  4AXS A;  2AP9 A;  2A1F A;  3K4Y A;  3T7B A;  3D40 A;  4A7X A;  2OGX A;  2V5H A;  2HMF A;  4F6T A;  3D41 A;  2R8V A;  2WXB A;  3ZZF A;  4NDQ A;  2J5V A;  1E19 A;  4NDQ B;  3TVI A;  2J4K A;  2BRI A;  2J4L A;  3QUO A;  4NDR B;  2J0W A;  2J0X A;  2JJ4 A;  4JZ8 A;  3KZF A;  3K4O A;  1B7B A;  2CDQ A;  1OHB A;  3K52 A;  2BRX A;  1GSJ A;  2AKO A;  2BMU A;  4NDP A;  2OGX B;  3LKK A;  4F6T B;  3S6K A;  1Z9D A; 
#chains in the Genus database with same CATH topology
 2WE4 A;  3ZZG A;  3AB4 A;  2BND A;  4I49 A;  3S6H A;  3ZZH A;  2BNF A;  4Q1T A;  4KZT A;  4USJ A;  3S6G A;  4OLC A;  3C1N A;  3B8G A;  3AB2 A;  2BNE A;  3QVF A;  3D2M A;  1GS5 A;  2W21 A;  4A7W A;  3QUR A;  4NDP B;  3D2P A;  1YBD A;  2JJX A;  3WWM A;  4NDO A;  3EK6 A;  3QVH A;  3C1M A;  3C20 A;  3L76 A;  3L86 A;  2IJ9 A;  3AAW A;  2E9Y A;  2BUF A;  2J5T A;  2R98 A;  3LL9 A;  3WWN A;  2VA1 A;  4JZ9 A;  2BTY A;  3LL5 A;  2X2W A;  2JI5 A;  4NDR A;  3K56 A;  3U6U A;  1OH9 A;  4JZ7 A;  3QUN A;  2WE5 A;  2V4Y A;  3NWY A;  4AB7 A;  2RD5 A;  1OHA A;  2J4J A;  3EK5 A;  3ZZI A;  4NDO B;  4AXS A;  2AP9 A;  2A1F A;  3K4Y A;  3T7B A;  3D40 A;  4A7X A;  2OGX A;  2V5H A;  2HMF A;  4F6T A;  3D41 A;  2R8V A;  2WXB A;  3ZZF A;  4NDQ A;  2J5V A;  1E19 A;  4NDQ B;  3TVI A;  2J4K A;  2BRI A;  2J4L A;  3QUO A;  4NDR B;  2J0W A;  2J0X A;  2JJ4 A;  4JZ8 A;  3KZF A;  3K4O A;  1B7B A;  2CDQ A;  1OHB A;  3K52 A;  2BRX A;  1GSJ A;  2AKO A;  2BMU A;  4NDP A;  2OGX B;  3LKK A;  4F6T B;  3S6K A;  1Z9D A; 
#chains in the Genus database with same CATH homology
 2WE4 A;  3ZZG A;  3AB4 A;  2BND A;  4I49 A;  3S6H A;  3ZZH A;  2BNF A;  4Q1T A;  4KZT A;  4USJ A;  3S6G A;  4OLC A;  3C1N A;  3B8G A;  3AB2 A;  2BNE A;  3QVF A;  3D2M A;  1GS5 A;  2W21 A;  4A7W A;  3QUR A;  4NDP B;  3D2P A;  1YBD A;  2JJX A;  3WWM A;  4NDO A;  3EK6 A;  3QVH A;  3C1M A;  3C20 A;  3L76 A;  3L86 A;  2IJ9 A;  3AAW A;  2E9Y A;  2BUF A;  2J5T A;  2R98 A;  3LL9 A;  3WWN A;  2VA1 A;  4JZ9 A;  2BTY A;  3LL5 A;  2X2W A;  2JI5 A;  4NDR A;  3K56 A;  3U6U A;  1OH9 A;  4JZ7 A;  3QUN A;  2WE5 A;  2V4Y A;  3NWY A;  4AB7 A;  2RD5 A;  1OHA A;  2J4J A;  3EK5 A;  3ZZI A;  4NDO B;  4AXS A;  2AP9 A;  2A1F A;  3K4Y A;  3T7B A;  3D40 A;  4A7X A;  2OGX A;  2V5H A;  2HMF A;  4F6T A;  3D41 A;  2R8V A;  2WXB A;  3ZZF A;  4NDQ A;  2J5V A;  1E19 A;  4NDQ B;  3TVI A;  2J4K A;  2BRI A;  2J4L A;  3QUO A;  4NDR B;  2J0W A;  2J0X A;  2JJ4 A;  4JZ8 A;  3KZF A;  3K4O A;  1B7B A;  2CDQ A;  1OHB A;  3K52 A;  2BRX A;  1GSJ A;  2AKO A;  2BMU A;  4NDP A;  2OGX B;  3LKK A;  4F6T B;  3S6K A;  1Z9D A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.