2A1FA

Crystal structure of uridylate kinase
Total Genus 82

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
82
sequence length
239
structure length
232
Chain Sequence
LSQPIYKRILLKLSGEALQGEDGLGIDPAILDRMAVEIKELVEMGVEVSVVLGGGNLFRGAKLAKAGMNRVVGDHMGMLATVMNGLAMRDSLFRADVNAKLMSAFQLNGICDTYNWSEAIKMLREKRVVIFSAGTGNPFFTTDSTACLRGIEIEADVVLKATKVDGVYDCAKLYKNLSYAEVIDKELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTICEG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV5 (216-219)AH7 (199-208)TVIII1 (6-9)S2 (47-52)3H1 (15-18)TI1 (20-23)TI2 (54-57)AH1 (28-44)S8 (212-216)TI3 (55-58)AH3 (70-95)TIV2 (137-140)TII'1 (133-136)TII1 (107-110)S5 (128-132)S3 (99-103)TVIII2 (103-106)TIV1 (108-111)S4 (112-113)AH8 (222-228)S7 (183-185)TIV4 (169-179)AH6 (186-192)TII2 (219-222)AH5 (142-153)S1 (8-13)AH2 (60-66)S6 (157-162)TIV3 (168-178)AH4 (116-125)Updating...
connected with : NaN
publication title Crystal Structure of Uridylate kinase
rcsb
molecule keywords Uridylate kinase
molecule tags Transferase
source organism Haemophilus influenzae
total genus 82
structure length 232
sequence length 239
chains with identical sequence B, C, D, E, F
ec nomenclature ec 2.7.4.22: UMP kinase.
pdb deposition date 2005-06-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 2a1fA00
2BTYA 3S6KA 3WWNA 2JI5A 2V5HA 4AXSA 4JZ9A 2J4LA 3K4YA 3T7BA 2BMUA 4NDOA 4F6TB 2V4YA 2RD5A 3LL9A 3NWYA 3C1NA 4NDPB 4I49A 3D2MA 4F6TA 3S6HA 3QVHA 2WXBA 3EK6A 2VA1A 3AB4A 2JJ4A 4NDPA 2BRXA 3K56A 4NDOB 1GSJA 2BNDA 3L86A 4USJA 2J0XA 2X2WA 3ZZGA 3K4OA 3B8GA 2BNFA 1Z9DA 3C20A 2AP9A 3AAWA 3WWMA 4NDRB 2JJXA 3AB2A 1E19A 1YBDA 2J5VA 2OGXA 1GS5A 3ZZFA 2BUFA 1OHBA 4NDRA 4NDQB 2HMFA 2WE4A 2WE5A 3LKKA 2AKOA 3C1MA 3KZFA 4A7WA 3QUOA 4NDQA 4KZTA 3D2PA 1B7BA 2BRIA 4Q1TA 2CDQA 2OGXB 3TVIA 1OH9A 2J4KA 2J5TA 2J0WA 3ZZHA 2E9YA 2W21A 1OHAA 2R98A 4AB7A 3D41A 2BNEA 4OLCA 3D40A 3ZZIA 3EK5A 3QURA 3QUNA 3L76A 3QVFA 3S6GA 2J4JA 3LL5A 4JZ7A 3K52A 2R8VA 2A1FA 3U6UA 2IJ9A 4JZ8A 4A7XA
chains in the Genus database with same CATH superfamily
2BTYA 3S6KA 3WWNA 2JI5A 2V5HA 4AXSA 4JZ9A 2J4LA 3K4YA 3T7BA 2BMUA 4NDOA 4F6TB 2V4YA 2RD5A 3LL9A 3NWYA 3C1NA 4NDPB 4I49A 3D2MA 4F6TA 3S6HA 3QVHA 2WXBA 3EK6A 2VA1A 3AB4A 2JJ4A 4NDPA 2BRXA 3K56A 4NDOB 1GSJA 2BNDA 3L86A 4USJA 2J0XA 2X2WA 3ZZGA 3K4OA 3B8GA 2BNFA 1Z9DA 3C20A 2AP9A 3AAWA 3WWMA 4NDRB 2JJXA 3AB2A 1E19A 1YBDA 2J5VA 2OGXA 1GS5A 3ZZFA 2BUFA 1OHBA 4NDRA 4NDQB 2HMFA 2WE4A 2WE5A 3LKKA 2AKOA 3C1MA 3KZFA 4A7WA 3QUOA 4NDQA 4KZTA 3D2PA 1B7BA 2BRIA 4Q1TA 2CDQA 2OGXB 3TVIA 1OH9A 2J4KA 2J5TA 2J0WA 3ZZHA 2E9YA 2W21A 1OHAA 2R98A 4AB7A 3D41A 2BNEA 4OLCA 3D40A 3ZZIA 3EK5A 3QURA 3QUNA 3L76A 3QVFA 3S6GA 2J4JA 3LL5A 4JZ7A 3K52A 2R8VA 2A1FA 3U6UA 2IJ9A 4JZ8A 4A7XA
chains in the Genus database with same CATH topology
2BTYA 3S6KA 3WWNA 2JI5A 2V5HA 4AXSA 4JZ9A 2J4LA 3K4YA 3T7BA 2BMUA 4NDOA 4F6TB 2V4YA 2RD5A 3LL9A 3NWYA 3C1NA 4NDPB 4I49A 3D2MA 4F6TA 3S6HA 3QVHA 2WXBA 3EK6A 2VA1A 3AB4A 2JJ4A 4NDPA 2BRXA 3K56A 4NDOB 1GSJA 2BNDA 3L86A 4USJA 2J0XA 2X2WA 3ZZGA 3K4OA 3B8GA 2BNFA 1Z9DA 3C20A 2AP9A 3AAWA 3WWMA 4NDRB 2JJXA 3AB2A 1E19A 1YBDA 2J5VA 2OGXA 1GS5A 3ZZFA 2BUFA 1OHBA 4NDRA 4NDQB 2HMFA 2WE4A 2WE5A 3LKKA 2AKOA 3C1MA 3KZFA 4A7WA 3QUOA 4NDQA 4KZTA 3D2PA 1B7BA 2BRIA 4Q1TA 2CDQA 2OGXB 3TVIA 1OH9A 2J4KA 2J5TA 2J0WA 3ZZHA 2E9YA 2W21A 1OHAA 2R98A 4AB7A 3D41A 2BNEA 4OLCA 3D40A 3ZZIA 3EK5A 3QURA 3QUNA 3L76A 3QVFA 3S6GA 2J4JA 3LL5A 4JZ7A 3K52A 2R8VA 2A1FA 3U6UA 2IJ9A 4JZ8A 4A7XA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BTY A;  3S6K A;  3WWN A;  2JI5 A;  2V5H A;  4AXS A;  4JZ9 A;  2J4L A;  3K4Y A;  3T7B A;  2BMU A;  4NDO A;  4F6T B;  2V4Y A;  2RD5 A;  3LL9 A;  3NWY A;  3C1N A;  4NDP B;  4I49 A;  3D2M A;  4F6T A;  3S6H A;  3QVH A;  2WXB A;  3EK6 A;  2VA1 A;  3AB4 A;  2JJ4 A;  4NDP A;  2BRX A;  3K56 A;  4NDO B;  1GSJ A;  2BND A;  3L86 A;  4USJ A;  2J0X A;  2X2W A;  3ZZG A;  3K4O A;  3B8G A;  2BNF A;  1Z9D A;  3C20 A;  2AP9 A;  3AAW A;  3WWM A;  4NDR B;  2JJX A;  3AB2 A;  1E19 A;  1YBD A;  2J5V A;  2OGX A;  1GS5 A;  3ZZF A;  2BUF A;  1OHB A;  4NDR A;  4NDQ B;  2HMF A;  2WE4 A;  2WE5 A;  3LKK A;  2AKO A;  3C1M A;  3KZF A;  4A7W A;  3QUO A;  4NDQ A;  4KZT A;  3D2P A;  1B7B A;  2BRI A;  4Q1T A;  2CDQ A;  2OGX B;  3TVI A;  1OH9 A;  2J4K A;  2J5T A;  2J0W A;  3ZZH A;  2E9Y A;  2W21 A;  1OHA A;  2R98 A;  4AB7 A;  3D41 A;  2BNE A;  4OLC A;  3D40 A;  3ZZI A;  3EK5 A;  3QUR A;  3QUN A;  3L76 A;  3QVF A;  3S6G A;  2J4J A;  3LL5 A;  4JZ7 A;  3K52 A;  2R8V A;  2A1F A;  3U6U A;  2IJ9 A;  4JZ8 A;  4A7X A; 
#chains in the Genus database with same CATH topology
 2BTY A;  3S6K A;  3WWN A;  2JI5 A;  2V5H A;  4AXS A;  4JZ9 A;  2J4L A;  3K4Y A;  3T7B A;  2BMU A;  4NDO A;  4F6T B;  2V4Y A;  2RD5 A;  3LL9 A;  3NWY A;  3C1N A;  4NDP B;  4I49 A;  3D2M A;  4F6T A;  3S6H A;  3QVH A;  2WXB A;  3EK6 A;  2VA1 A;  3AB4 A;  2JJ4 A;  4NDP A;  2BRX A;  3K56 A;  4NDO B;  1GSJ A;  2BND A;  3L86 A;  4USJ A;  2J0X A;  2X2W A;  3ZZG A;  3K4O A;  3B8G A;  2BNF A;  1Z9D A;  3C20 A;  2AP9 A;  3AAW A;  3WWM A;  4NDR B;  2JJX A;  3AB2 A;  1E19 A;  1YBD A;  2J5V A;  2OGX A;  1GS5 A;  3ZZF A;  2BUF A;  1OHB A;  4NDR A;  4NDQ B;  2HMF A;  2WE4 A;  2WE5 A;  3LKK A;  2AKO A;  3C1M A;  3KZF A;  4A7W A;  3QUO A;  4NDQ A;  4KZT A;  3D2P A;  1B7B A;  2BRI A;  4Q1T A;  2CDQ A;  2OGX B;  3TVI A;  1OH9 A;  2J4K A;  2J5T A;  2J0W A;  3ZZH A;  2E9Y A;  2W21 A;  1OHA A;  2R98 A;  4AB7 A;  3D41 A;  2BNE A;  4OLC A;  3D40 A;  3ZZI A;  3EK5 A;  3QUR A;  3QUN A;  3L76 A;  3QVF A;  3S6G A;  2J4J A;  3LL5 A;  4JZ7 A;  3K52 A;  2R8V A;  2A1F A;  3U6U A;  2IJ9 A;  4JZ8 A;  4A7X A; 
#chains in the Genus database with same CATH homology
 2BTY A;  3S6K A;  3WWN A;  2JI5 A;  2V5H A;  4AXS A;  4JZ9 A;  2J4L A;  3K4Y A;  3T7B A;  2BMU A;  4NDO A;  4F6T B;  2V4Y A;  2RD5 A;  3LL9 A;  3NWY A;  3C1N A;  4NDP B;  4I49 A;  3D2M A;  4F6T A;  3S6H A;  3QVH A;  2WXB A;  3EK6 A;  2VA1 A;  3AB4 A;  2JJ4 A;  4NDP A;  2BRX A;  3K56 A;  4NDO B;  1GSJ A;  2BND A;  3L86 A;  4USJ A;  2J0X A;  2X2W A;  3ZZG A;  3K4O A;  3B8G A;  2BNF A;  1Z9D A;  3C20 A;  2AP9 A;  3AAW A;  3WWM A;  4NDR B;  2JJX A;  3AB2 A;  1E19 A;  1YBD A;  2J5V A;  2OGX A;  1GS5 A;  3ZZF A;  2BUF A;  1OHB A;  4NDR A;  4NDQ B;  2HMF A;  2WE4 A;  2WE5 A;  3LKK A;  2AKO A;  3C1M A;  3KZF A;  4A7W A;  3QUO A;  4NDQ A;  4KZT A;  3D2P A;  1B7B A;  2BRI A;  4Q1T A;  2CDQ A;  2OGX B;  3TVI A;  1OH9 A;  2J4K A;  2J5T A;  2J0W A;  3ZZH A;  2E9Y A;  2W21 A;  1OHA A;  2R98 A;  4AB7 A;  3D41 A;  2BNE A;  4OLC A;  3D40 A;  3ZZI A;  3EK5 A;  3QUR A;  3QUN A;  3L76 A;  3QVF A;  3S6G A;  2J4J A;  3LL5 A;  4JZ7 A;  3K52 A;  2R8V A;  2A1F A;  3U6U A;  2IJ9 A;  4JZ8 A;  4A7X A; 
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