2VA1A

Crystal structure of ump kinase from ureaplasma parvum
Total Genus 81
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
234
structure length
226
Chain Sequence
b'RKQRIVIKISGACLKQNDSSIIDFIKINDLAEQIEKISKKYIVSIVLGGGNIWRGSIAKELDMDRNLADNMGMMATIINGLALENALNHLNVNTIVLSAIKCDKLVHESSANNIKKAIEKEQVMIFVAGTGFPYFTTDSCAAIRAAETESSIILMGKNGVDGVYDSDFYEHITFNMALTQNLKVMDATALALCQENNINLLVFNIDKPNAIVDVLEKKNKYTIVSK'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords URIDYLATE KINASE
publication title Structural and Functional Investigations of Ureaplasma Parvum Ump Kinase - a Potential Antibacterial Drug Target
pubmed doi rcsb
source organism Ureaplasma parvum
molecule tags Transferase
total genus 81
structure length 226
sequence length 234
chains with identical sequence B, C, D, E, F
ec nomenclature ec 2.7.4.22: UMP kinase.
pdb deposition date 2007-08-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 2va1A00
2W21A 3B8GA 3QUOA 3QVHA 2WE5A 3TVIA 2WE4A 4I49A 1B7BA 2VA1A 3T7BA 2J4LA 3D40A 2J0XA 3LL5A 2OGXA 3LL9A 2BMUA 2BTYA 1OH9A 3C1NA 2V4YA 3WWMA 4F6TA 3AAWA 3K4OA 2AKOA 2J0WA 2J4JA 1E19A 2R98A 3K52A 2CDQA 2R8VA 4OLCA 3LKKA 2BRXA 3L86A 3WWNA 2OGXB 3KZFA 3EK5A 2BRIA 3ZZHA 3NWYA 2AP9A 3ZZFA 4A7WA 4AXSA 4F6TB 3QVFA 3EK6A 4NDQB 3D2MA 3U6UA 1GSJA 4NDRA 2V5HA 2IJ9A 2JJ4A 4JZ7A 3K56A 2BNDA 4NDQA 2HMFA 4USJA 2J5TA 1OHBA 3C1MA 3D41A 4NDOA 4JZ8A 4NDPB 3AB2A 2JI5A 4NDRB 4KZTA 2J4KA 4NDPA 3S6GA 1Z9DA 3L76A 2JJXA 3C20A 4JZ9A 3ZZGA 2E9YA 1OHAA 2BNFA 2RD5A 3D2PA 4NDOB 4A7XA 2BNEA 3QURA 3AB4A 2BUFA 3S6KA 2J5VA 4AB7A 1YBDA 3QUNA 1GS5A 3ZZIA 4Q1TA 2A1FA 2X2WA 2WXBA 3S6HA 3K4YA
chains in the Genus database with same CATH superfamily
2W21A 3B8GA 3QUOA 3QVHA 2WE5A 3TVIA 2WE4A 4I49A 1B7BA 2VA1A 3T7BA 2J4LA 3D40A 2J0XA 3LL5A 2OGXA 3LL9A 2BMUA 2BTYA 1OH9A 3C1NA 2V4YA 3WWMA 4F6TA 3AAWA 3K4OA 2AKOA 2J0WA 2J4JA 1E19A 2R98A 3K52A 2CDQA 2R8VA 4OLCA 3LKKA 2BRXA 3L86A 3WWNA 2OGXB 3KZFA 3EK5A 2BRIA 3ZZHA 3NWYA 2AP9A 3ZZFA 4A7WA 4AXSA 4F6TB 3QVFA 3EK6A 4NDQB 3D2MA 3U6UA 1GSJA 4NDRA 2V5HA 2IJ9A 2JJ4A 4JZ7A 3K56A 2BNDA 4NDQA 2HMFA 4USJA 2J5TA 1OHBA 3C1MA 3D41A 4NDOA 4JZ8A 4NDPB 3AB2A 2JI5A 4NDRB 4KZTA 2J4KA 4NDPA 3S6GA 1Z9DA 3L76A 2JJXA 3C20A 4JZ9A 3ZZGA 2E9YA 1OHAA 2BNFA 2RD5A 3D2PA 4NDOB 4A7XA 2BNEA 3QURA 3AB4A 2BUFA 3S6KA 2J5VA 4AB7A 1YBDA 3QUNA 1GS5A 3ZZIA 4Q1TA 2A1FA 2X2WA 2WXBA 3S6HA 3K4YA
chains in the Genus database with same CATH topology
2W21A 3B8GA 3QUOA 3QVHA 2WE5A 3TVIA 2WE4A 4I49A 1B7BA 2VA1A 3T7BA 2J4LA 3D40A 2J0XA 3LL5A 2OGXA 3LL9A 2BMUA 2BTYA 1OH9A 3C1NA 2V4YA 3WWMA 4F6TA 3AAWA 3K4OA 2AKOA 2J0WA 2J4JA 1E19A 2R98A 3K52A 2CDQA 2R8VA 4OLCA 3LKKA 2BRXA 3L86A 3WWNA 2OGXB 3KZFA 3EK5A 2BRIA 3ZZHA 3NWYA 2AP9A 3ZZFA 4A7WA 4AXSA 4F6TB 3QVFA 3EK6A 4NDQB 3D2MA 3U6UA 1GSJA 4NDRA 2V5HA 2IJ9A 2JJ4A 4JZ7A 3K56A 2BNDA 4NDQA 2HMFA 4USJA 2J5TA 1OHBA 3C1MA 3D41A 4NDOA 4JZ8A 4NDPB 3AB2A 2JI5A 4NDRB 4KZTA 2J4KA 4NDPA 3S6GA 1Z9DA 3L76A 2JJXA 3C20A 4JZ9A 3ZZGA 2E9YA 1OHAA 2BNFA 2RD5A 3D2PA 4NDOB 4A7XA 2BNEA 3QURA 3AB4A 2BUFA 3S6KA 2J5VA 4AB7A 1YBDA 3QUNA 1GS5A 3ZZIA 4Q1TA 2A1FA 2X2WA 2WXBA 3S6HA 3K4YA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2W21 A;  3B8G A;  3QUO A;  3QVH A;  2WE5 A;  3TVI A;  2WE4 A;  4I49 A;  1B7B A;  2VA1 A;  3T7B A;  2J4L A;  3D40 A;  2J0X A;  3LL5 A;  2OGX A;  3LL9 A;  2BMU A;  2BTY A;  1OH9 A;  3C1N A;  2V4Y A;  3WWM A;  4F6T A;  3AAW A;  3K4O A;  2AKO A;  2J0W A;  2J4J A;  1E19 A;  2R98 A;  3K52 A;  2CDQ A;  2R8V A;  4OLC A;  3LKK A;  2BRX A;  3L86 A;  3WWN A;  2OGX B;  3KZF A;  3EK5 A;  2BRI A;  3ZZH A;  3NWY A;  2AP9 A;  3ZZF A;  4A7W A;  4AXS A;  4F6T B;  3QVF A;  3EK6 A;  4NDQ B;  3D2M A;  3U6U A;  1GSJ A;  4NDR A;  2V5H A;  2IJ9 A;  2JJ4 A;  4JZ7 A;  3K56 A;  2BND A;  4NDQ A;  2HMF A;  4USJ A;  2J5T A;  1OHB A;  3C1M A;  3D41 A;  4NDO A;  4JZ8 A;  4NDP B;  3AB2 A;  2JI5 A;  4NDR B;  4KZT A;  2J4K A;  4NDP A;  3S6G A;  1Z9D A;  3L76 A;  2JJX A;  3C20 A;  4JZ9 A;  3ZZG A;  2E9Y A;  1OHA A;  2BNF A;  2RD5 A;  3D2P A;  4NDO B;  4A7X A;  2BNE A;  3QUR A;  3AB4 A;  2BUF A;  3S6K A;  2J5V A;  4AB7 A;  1YBD A;  3QUN A;  1GS5 A;  3ZZI A;  4Q1T A;  2A1F A;  2X2W A;  2WXB A;  3S6H A;  3K4Y A; 
#chains in the Genus database with same CATH topology
 2W21 A;  3B8G A;  3QUO A;  3QVH A;  2WE5 A;  3TVI A;  2WE4 A;  4I49 A;  1B7B A;  2VA1 A;  3T7B A;  2J4L A;  3D40 A;  2J0X A;  3LL5 A;  2OGX A;  3LL9 A;  2BMU A;  2BTY A;  1OH9 A;  3C1N A;  2V4Y A;  3WWM A;  4F6T A;  3AAW A;  3K4O A;  2AKO A;  2J0W A;  2J4J A;  1E19 A;  2R98 A;  3K52 A;  2CDQ A;  2R8V A;  4OLC A;  3LKK A;  2BRX A;  3L86 A;  3WWN A;  2OGX B;  3KZF A;  3EK5 A;  2BRI A;  3ZZH A;  3NWY A;  2AP9 A;  3ZZF A;  4A7W A;  4AXS A;  4F6T B;  3QVF A;  3EK6 A;  4NDQ B;  3D2M A;  3U6U A;  1GSJ A;  4NDR A;  2V5H A;  2IJ9 A;  2JJ4 A;  4JZ7 A;  3K56 A;  2BND A;  4NDQ A;  2HMF A;  4USJ A;  2J5T A;  1OHB A;  3C1M A;  3D41 A;  4NDO A;  4JZ8 A;  4NDP B;  3AB2 A;  2JI5 A;  4NDR B;  4KZT A;  2J4K A;  4NDP A;  3S6G A;  1Z9D A;  3L76 A;  2JJX A;  3C20 A;  4JZ9 A;  3ZZG A;  2E9Y A;  1OHA A;  2BNF A;  2RD5 A;  3D2P A;  4NDO B;  4A7X A;  2BNE A;  3QUR A;  3AB4 A;  2BUF A;  3S6K A;  2J5V A;  4AB7 A;  1YBD A;  3QUN A;  1GS5 A;  3ZZI A;  4Q1T A;  2A1F A;  2X2W A;  2WXB A;  3S6H A;  3K4Y A; 
#chains in the Genus database with same CATH homology
 2W21 A;  3B8G A;  3QUO A;  3QVH A;  2WE5 A;  3TVI A;  2WE4 A;  4I49 A;  1B7B A;  2VA1 A;  3T7B A;  2J4L A;  3D40 A;  2J0X A;  3LL5 A;  2OGX A;  3LL9 A;  2BMU A;  2BTY A;  1OH9 A;  3C1N A;  2V4Y A;  3WWM A;  4F6T A;  3AAW A;  3K4O A;  2AKO A;  2J0W A;  2J4J A;  1E19 A;  2R98 A;  3K52 A;  2CDQ A;  2R8V A;  4OLC A;  3LKK A;  2BRX A;  3L86 A;  3WWN A;  2OGX B;  3KZF A;  3EK5 A;  2BRI A;  3ZZH A;  3NWY A;  2AP9 A;  3ZZF A;  4A7W A;  4AXS A;  4F6T B;  3QVF A;  3EK6 A;  4NDQ B;  3D2M A;  3U6U A;  1GSJ A;  4NDR A;  2V5H A;  2IJ9 A;  2JJ4 A;  4JZ7 A;  3K56 A;  2BND A;  4NDQ A;  2HMF A;  4USJ A;  2J5T A;  1OHB A;  3C1M A;  3D41 A;  4NDO A;  4JZ8 A;  4NDP B;  3AB2 A;  2JI5 A;  4NDR B;  4KZT A;  2J4K A;  4NDP A;  3S6G A;  1Z9D A;  3L76 A;  2JJX A;  3C20 A;  4JZ9 A;  3ZZG A;  2E9Y A;  1OHA A;  2BNF A;  2RD5 A;  3D2P A;  4NDO B;  4A7X A;  2BNE A;  3QUR A;  3AB4 A;  2BUF A;  3S6K A;  2J5V A;  4AB7 A;  1YBD A;  3QUN A;  1GS5 A;  3ZZI A;  4Q1T A;  2A1F A;  2X2W A;  2WXB A;  3S6H A;  3K4Y A; 
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