2VA1A

Crystal structure of ump kinase from ureaplasma parvum
Total Genus 81
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
234
structure length
226
Chain Sequence
RKQRIVIKISGACLKQNDSSIIDFIKINDLAEQIEKISKKYIVSIVLGGGNIWRGSIAKELDMDRNLADNMGMMATIINGLALENALNHLNVNTIVLSAIKCDKLVHESSANNIKKAIEKEQVMIFVAGTGFPYFTTDSCAAIRAAETESSIILMGKNGVDGVYDSDFYEHITFNMALTQNLKVMDATALALCQENNINLLVFNIDKPNAIVDVLEKKNKYTIVSK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords URIDYLATE KINASE
publication title Structural and Functional Investigations of Ureaplasma Parvum Ump Kinase - a Potential Antibacterial Drug Target
pubmed doi rcsb
source organism Ureaplasma parvum
total genus 81
structure length 226
sequence length 234
chains with identical sequence B, C, D, E, F
ec nomenclature ec 2.7.4.22: UMP kinase.
pdb deposition date 2007-08-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 2va1A00
2WE4A 4A7XA 3S6HA 4JZ8A 4NDQB 3WWNA 2R98A 3K4YA 3WWMA 2VA1A 2E9YA 2WE5A 4I49A 4NDPA 2A1FA 3U6UA 3ZZFA 2J4LA 3QUNA 3AB2A 4NDOB 2J5VA 4A7WA 2JI5A 2R8VA 3AAWA 1YBDA 2JJXA 1B7BA 2BNEA 2J4JA 2V4YA 3AB4A 4AXSA 1GS5A 1OHBA 4KZTA 2HMFA 4JZ9A 3QURA 4NDRB 3QUOA 2CDQA 2WXBA 4JZ7A 3L86A 2JJ4A 3D2MA 3KZFA 1GSJA 3B8GA 3K56A 4OLCA 3L76A 3LL9A 3EK5A 1OHAA 2W21A 3LL5A 2RD5A 4NDQA 2OGXB 4F6TB 2X2WA 2BRIA 1E19A 3S6GA 3C1NA 3LKKA 3ZZHA 3S6KA 3TVIA 2AKOA 4AB7A 3NWYA 4NDOA 2J5TA 2BNFA 4NDPB 1Z9DA 3EK6A 3D41A 2OGXA 2BNDA 4Q1TA 2AP9A 3K52A 2J0XA 3QVHA 4NDRA 2IJ9A 1OH9A 3ZZGA 2BTYA 2V5HA 2J4KA 3C20A 3C1MA 3K4OA 2BRXA 3D40A 3QVFA 3T7BA 4USJA 2J0WA 2BMUA 3D2PA 4F6TA 3ZZIA 2BUFA
chains in the Genus database with same CATH superfamily
2WE4A 4A7XA 3S6HA 4JZ8A 4NDQB 3WWNA 2R98A 3K4YA 3WWMA 2VA1A 2E9YA 2WE5A 4I49A 4NDPA 2A1FA 3U6UA 3ZZFA 2J4LA 3QUNA 3AB2A 4NDOB 2J5VA 4A7WA 2JI5A 2R8VA 3AAWA 1YBDA 2JJXA 1B7BA 2BNEA 2J4JA 2V4YA 3AB4A 4AXSA 1GS5A 1OHBA 4KZTA 2HMFA 4JZ9A 3QURA 4NDRB 3QUOA 2CDQA 2WXBA 4JZ7A 3L86A 2JJ4A 3D2MA 3KZFA 1GSJA 3B8GA 3K56A 4OLCA 3L76A 3LL9A 3EK5A 1OHAA 2W21A 3LL5A 2RD5A 4NDQA 2OGXB 4F6TB 2X2WA 2BRIA 1E19A 3S6GA 3C1NA 3LKKA 3ZZHA 3S6KA 3TVIA 2AKOA 4AB7A 3NWYA 4NDOA 2J5TA 2BNFA 4NDPB 1Z9DA 3EK6A 3D41A 2OGXA 2BNDA 4Q1TA 2AP9A 3K52A 2J0XA 3QVHA 4NDRA 2IJ9A 1OH9A 3ZZGA 2BTYA 2V5HA 2J4KA 3C20A 3C1MA 3K4OA 2BRXA 3D40A 3QVFA 3T7BA 4USJA 2J0WA 2BMUA 3D2PA 4F6TA 3ZZIA 2BUFA
chains in the Genus database with same CATH topology
2WE4A 4A7XA 3S6HA 4JZ8A 4NDQB 3WWNA 2R98A 3K4YA 3WWMA 2VA1A 2E9YA 2WE5A 4I49A 4NDPA 2A1FA 3U6UA 3ZZFA 2J4LA 3QUNA 3AB2A 4NDOB 2J5VA 4A7WA 2JI5A 2R8VA 3AAWA 1YBDA 2JJXA 1B7BA 2BNEA 2J4JA 2V4YA 3AB4A 4AXSA 1GS5A 1OHBA 4KZTA 2HMFA 4JZ9A 3QURA 4NDRB 3QUOA 2CDQA 2WXBA 4JZ7A 3L86A 2JJ4A 3D2MA 3KZFA 1GSJA 3B8GA 3K56A 4OLCA 3L76A 3LL9A 3EK5A 1OHAA 2W21A 3LL5A 2RD5A 4NDQA 2OGXB 4F6TB 2X2WA 2BRIA 1E19A 3S6GA 3C1NA 3LKKA 3ZZHA 3S6KA 3TVIA 2AKOA 4AB7A 3NWYA 4NDOA 2J5TA 2BNFA 4NDPB 1Z9DA 3EK6A 3D41A 2OGXA 2BNDA 4Q1TA 2AP9A 3K52A 2J0XA 3QVHA 4NDRA 2IJ9A 1OH9A 3ZZGA 2BTYA 2V5HA 2J4KA 3C20A 3C1MA 3K4OA 2BRXA 3D40A 3QVFA 3T7BA 4USJA 2J0WA 2BMUA 3D2PA 4F6TA 3ZZIA 2BUFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2WE4 A;  4A7X A;  3S6H A;  4JZ8 A;  4NDQ B;  3WWN A;  2R98 A;  3K4Y A;  3WWM A;  2VA1 A;  2E9Y A;  2WE5 A;  4I49 A;  4NDP A;  2A1F A;  3U6U A;  3ZZF A;  2J4L A;  3QUN A;  3AB2 A;  4NDO B;  2J5V A;  4A7W A;  2JI5 A;  2R8V A;  3AAW A;  1YBD A;  2JJX A;  1B7B A;  2BNE A;  2J4J A;  2V4Y A;  3AB4 A;  4AXS A;  1GS5 A;  1OHB A;  4KZT A;  2HMF A;  4JZ9 A;  3QUR A;  4NDR B;  3QUO A;  2CDQ A;  2WXB A;  4JZ7 A;  3L86 A;  2JJ4 A;  3D2M A;  3KZF A;  1GSJ A;  3B8G A;  3K56 A;  4OLC A;  3L76 A;  3LL9 A;  3EK5 A;  1OHA A;  2W21 A;  3LL5 A;  2RD5 A;  4NDQ A;  2OGX B;  4F6T B;  2X2W A;  2BRI A;  1E19 A;  3S6G A;  3C1N A;  3LKK A;  3ZZH A;  3S6K A;  3TVI A;  2AKO A;  4AB7 A;  3NWY A;  4NDO A;  2J5T A;  2BNF A;  4NDP B;  1Z9D A;  3EK6 A;  3D41 A;  2OGX A;  2BND A;  4Q1T A;  2AP9 A;  3K52 A;  2J0X A;  3QVH A;  4NDR A;  2IJ9 A;  1OH9 A;  3ZZG A;  2BTY A;  2V5H A;  2J4K A;  3C20 A;  3C1M A;  3K4O A;  2BRX A;  3D40 A;  3QVF A;  3T7B A;  4USJ A;  2J0W A;  2BMU A;  3D2P A;  4F6T A;  3ZZI A;  2BUF A; 
#chains in the Genus database with same CATH topology
 2WE4 A;  4A7X A;  3S6H A;  4JZ8 A;  4NDQ B;  3WWN A;  2R98 A;  3K4Y A;  3WWM A;  2VA1 A;  2E9Y A;  2WE5 A;  4I49 A;  4NDP A;  2A1F A;  3U6U A;  3ZZF A;  2J4L A;  3QUN A;  3AB2 A;  4NDO B;  2J5V A;  4A7W A;  2JI5 A;  2R8V A;  3AAW A;  1YBD A;  2JJX A;  1B7B A;  2BNE A;  2J4J A;  2V4Y A;  3AB4 A;  4AXS A;  1GS5 A;  1OHB A;  4KZT A;  2HMF A;  4JZ9 A;  3QUR A;  4NDR B;  3QUO A;  2CDQ A;  2WXB A;  4JZ7 A;  3L86 A;  2JJ4 A;  3D2M A;  3KZF A;  1GSJ A;  3B8G A;  3K56 A;  4OLC A;  3L76 A;  3LL9 A;  3EK5 A;  1OHA A;  2W21 A;  3LL5 A;  2RD5 A;  4NDQ A;  2OGX B;  4F6T B;  2X2W A;  2BRI A;  1E19 A;  3S6G A;  3C1N A;  3LKK A;  3ZZH A;  3S6K A;  3TVI A;  2AKO A;  4AB7 A;  3NWY A;  4NDO A;  2J5T A;  2BNF A;  4NDP B;  1Z9D A;  3EK6 A;  3D41 A;  2OGX A;  2BND A;  4Q1T A;  2AP9 A;  3K52 A;  2J0X A;  3QVH A;  4NDR A;  2IJ9 A;  1OH9 A;  3ZZG A;  2BTY A;  2V5H A;  2J4K A;  3C20 A;  3C1M A;  3K4O A;  2BRX A;  3D40 A;  3QVF A;  3T7B A;  4USJ A;  2J0W A;  2BMU A;  3D2P A;  4F6T A;  3ZZI A;  2BUF A; 
#chains in the Genus database with same CATH homology
 2WE4 A;  4A7X A;  3S6H A;  4JZ8 A;  4NDQ B;  3WWN A;  2R98 A;  3K4Y A;  3WWM A;  2VA1 A;  2E9Y A;  2WE5 A;  4I49 A;  4NDP A;  2A1F A;  3U6U A;  3ZZF A;  2J4L A;  3QUN A;  3AB2 A;  4NDO B;  2J5V A;  4A7W A;  2JI5 A;  2R8V A;  3AAW A;  1YBD A;  2JJX A;  1B7B A;  2BNE A;  2J4J A;  2V4Y A;  3AB4 A;  4AXS A;  1GS5 A;  1OHB A;  4KZT A;  2HMF A;  4JZ9 A;  3QUR A;  4NDR B;  3QUO A;  2CDQ A;  2WXB A;  4JZ7 A;  3L86 A;  2JJ4 A;  3D2M A;  3KZF A;  1GSJ A;  3B8G A;  3K56 A;  4OLC A;  3L76 A;  3LL9 A;  3EK5 A;  1OHA A;  2W21 A;  3LL5 A;  2RD5 A;  4NDQ A;  2OGX B;  4F6T B;  2X2W A;  2BRI A;  1E19 A;  3S6G A;  3C1N A;  3LKK A;  3ZZH A;  3S6K A;  3TVI A;  2AKO A;  4AB7 A;  3NWY A;  4NDO A;  2J5T A;  2BNF A;  4NDP B;  1Z9D A;  3EK6 A;  3D41 A;  2OGX A;  2BND A;  4Q1T A;  2AP9 A;  3K52 A;  2J0X A;  3QVH A;  4NDR A;  2IJ9 A;  1OH9 A;  3ZZG A;  2BTY A;  2V5H A;  2J4K A;  3C20 A;  3C1M A;  3K4O A;  2BRX A;  3D40 A;  3QVF A;  3T7B A;  4USJ A;  2J0W A;  2BMU A;  3D2P A;  4F6T A;  3ZZI A;  2BUF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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