3K52A

Crystal structure of isopentenyl phosphate kinase from m. jannaschii in complex with ip
Total Genus 80
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
80
sequence length
260
structure length
260
Chain Sequence
MLTILKLGGSILSDKNVPYSIKWDNLERIAMEIKNALDYYKNQNKEIKLILVHGGGAFGHPVAKKYLKIEDGKKIFINMEKGFWEIQRAMRRFNNIIIDTLQSYDIPAVSIQPSSFVVFGDKLIFDTSAIKEMLKRNLVPVIHGDIVIDDKNGYRIISGDDIVPYLANELKADLILYATDVDGVLIDNKPIKRIDKNNIYKILNYLSGSNSIDVTGGMKYKIEMIRKNKCRGFVFNGNKANNIYKALLGEVEGTEIDFSE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords isopentenyl phosphate kinase
publication title Mutation of archaeal isopentenyl phosphate kinase highlights mechanism and guides phosphorylation of additional isoprenoid monophosphates.
pubmed doi rcsb
source organism Methanocaldococcus jannaschii
molecule tags Transferase
total genus 80
structure length 260
sequence length 260
chains with identical sequence B
ec nomenclature ec 2.7.4.26: Isopentenyl phosphate kinase.
pdb deposition date 2009-10-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 3k52A00
2RD5A 4OLCA 3D2MA 4KZTA 4JZ7A 4I49A 2BNEA 2HMFA 2BTYA 2R8VA 2V4YA 4JZ9A 3LKKA 3C1MA 4AXSA 3WWNA 3QVFA 3C20A 2JJXA 3EK5A 2J0XA 3QUNA 2BNFA 4NDQA 2JJ4A 1E19A 3NWYA 2OGXA 2BUFA 4NDRB 3WWMA 3S6GA 3ZZGA 2OGXB 4Q1TA 2J5VA 3K4OA 2AKOA 1GS5A 2WE5A 2J4LA 4F6TA 2CDQA 1OHAA 4USJA 4F6TB 1YBDA 4A7WA 3C1NA 3AAWA 3LL9A 2X2WA 3ZZHA 1OH9A 3QUOA 3B8GA 3KZFA 3AB2A 3L86A 2JI5A 4NDPA 3QVHA 4NDQB 1B7BA 4NDPB 2J0WA 2J4JA 2V5HA 2E9YA 4JZ8A 2AP9A 3K4YA 4NDOA 3K56A 2A1FA 3K52A 2R98A 3D41A 3LL5A 3D2PA 1Z9DA 1OHBA 2BRXA 3S6HA 3AB4A 3ZZIA 3ZZFA 2VA1A 2WXBA 4AB7A 2BNDA 4A7XA 2BRIA 1GSJA 2WE4A 3EK6A 3L76A 3TVIA 3S6KA 2J4KA 3U6UA 2W21A 2BMUA 4NDOB 3QURA 2IJ9A 3D40A 4NDRA 3T7BA 2J5TA
chains in the Genus database with same CATH superfamily
2RD5A 4OLCA 3D2MA 4KZTA 4JZ7A 4I49A 2BNEA 2HMFA 2BTYA 2R8VA 2V4YA 4JZ9A 3LKKA 3C1MA 4AXSA 3WWNA 3QVFA 3C20A 2JJXA 3EK5A 2J0XA 3QUNA 2BNFA 4NDQA 2JJ4A 1E19A 3NWYA 2OGXA 2BUFA 4NDRB 3WWMA 3S6GA 3ZZGA 2OGXB 4Q1TA 2J5VA 3K4OA 2AKOA 1GS5A 2WE5A 2J4LA 4F6TA 2CDQA 1OHAA 4USJA 4F6TB 1YBDA 4A7WA 3C1NA 3AAWA 3LL9A 2X2WA 3ZZHA 1OH9A 3QUOA 3B8GA 3KZFA 3AB2A 3L86A 2JI5A 4NDPA 3QVHA 4NDQB 1B7BA 4NDPB 2J0WA 2J4JA 2V5HA 2E9YA 4JZ8A 2AP9A 3K4YA 4NDOA 3K56A 2A1FA 3K52A 2R98A 3D41A 3LL5A 3D2PA 1Z9DA 1OHBA 2BRXA 3S6HA 3AB4A 3ZZIA 3ZZFA 2VA1A 2WXBA 4AB7A 2BNDA 4A7XA 2BRIA 1GSJA 2WE4A 3EK6A 3L76A 3TVIA 3S6KA 2J4KA 3U6UA 2W21A 2BMUA 4NDOB 3QURA 2IJ9A 3D40A 4NDRA 3T7BA 2J5TA
chains in the Genus database with same CATH topology
2RD5A 4OLCA 3D2MA 4KZTA 4JZ7A 4I49A 2BNEA 2HMFA 2BTYA 2R8VA 2V4YA 4JZ9A 3LKKA 3C1MA 4AXSA 3WWNA 3QVFA 3C20A 2JJXA 3EK5A 2J0XA 3QUNA 2BNFA 4NDQA 2JJ4A 1E19A 3NWYA 2OGXA 2BUFA 4NDRB 3WWMA 3S6GA 3ZZGA 2OGXB 4Q1TA 2J5VA 3K4OA 2AKOA 1GS5A 2WE5A 2J4LA 4F6TA 2CDQA 1OHAA 4USJA 4F6TB 1YBDA 4A7WA 3C1NA 3AAWA 3LL9A 2X2WA 3ZZHA 1OH9A 3QUOA 3B8GA 3KZFA 3AB2A 3L86A 2JI5A 4NDPA 3QVHA 4NDQB 1B7BA 4NDPB 2J0WA 2J4JA 2V5HA 2E9YA 4JZ8A 2AP9A 3K4YA 4NDOA 3K56A 2A1FA 3K52A 2R98A 3D41A 3LL5A 3D2PA 1Z9DA 1OHBA 2BRXA 3S6HA 3AB4A 3ZZIA 3ZZFA 2VA1A 2WXBA 4AB7A 2BNDA 4A7XA 2BRIA 1GSJA 2WE4A 3EK6A 3L76A 3TVIA 3S6KA 2J4KA 3U6UA 2W21A 2BMUA 4NDOB 3QURA 2IJ9A 3D40A 4NDRA 3T7BA 2J5TA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2RD5 A;  4OLC A;  3D2M A;  4KZT A;  4JZ7 A;  4I49 A;  2BNE A;  2HMF A;  2BTY A;  2R8V A;  2V4Y A;  4JZ9 A;  3LKK A;  3C1M A;  4AXS A;  3WWN A;  3QVF A;  3C20 A;  2JJX A;  3EK5 A;  2J0X A;  3QUN A;  2BNF A;  4NDQ A;  2JJ4 A;  1E19 A;  3NWY A;  2OGX A;  2BUF A;  4NDR B;  3WWM A;  3S6G A;  3ZZG A;  2OGX B;  4Q1T A;  2J5V A;  3K4O A;  2AKO A;  1GS5 A;  2WE5 A;  2J4L A;  4F6T A;  2CDQ A;  1OHA A;  4USJ A;  4F6T B;  1YBD A;  4A7W A;  3C1N A;  3AAW A;  3LL9 A;  2X2W A;  3ZZH A;  1OH9 A;  3QUO A;  3B8G A;  3KZF A;  3AB2 A;  3L86 A;  2JI5 A;  4NDP A;  3QVH A;  4NDQ B;  1B7B A;  4NDP B;  2J0W A;  2J4J A;  2V5H A;  2E9Y A;  4JZ8 A;  2AP9 A;  3K4Y A;  4NDO A;  3K56 A;  2A1F A;  3K52 A;  2R98 A;  3D41 A;  3LL5 A;  3D2P A;  1Z9D A;  1OHB A;  2BRX A;  3S6H A;  3AB4 A;  3ZZI A;  3ZZF A;  2VA1 A;  2WXB A;  4AB7 A;  2BND A;  4A7X A;  2BRI A;  1GSJ A;  2WE4 A;  3EK6 A;  3L76 A;  3TVI A;  3S6K A;  2J4K A;  3U6U A;  2W21 A;  2BMU A;  4NDO B;  3QUR A;  2IJ9 A;  3D40 A;  4NDR A;  3T7B A;  2J5T A; 
#chains in the Genus database with same CATH topology
 2RD5 A;  4OLC A;  3D2M A;  4KZT A;  4JZ7 A;  4I49 A;  2BNE A;  2HMF A;  2BTY A;  2R8V A;  2V4Y A;  4JZ9 A;  3LKK A;  3C1M A;  4AXS A;  3WWN A;  3QVF A;  3C20 A;  2JJX A;  3EK5 A;  2J0X A;  3QUN A;  2BNF A;  4NDQ A;  2JJ4 A;  1E19 A;  3NWY A;  2OGX A;  2BUF A;  4NDR B;  3WWM A;  3S6G A;  3ZZG A;  2OGX B;  4Q1T A;  2J5V A;  3K4O A;  2AKO A;  1GS5 A;  2WE5 A;  2J4L A;  4F6T A;  2CDQ A;  1OHA A;  4USJ A;  4F6T B;  1YBD A;  4A7W A;  3C1N A;  3AAW A;  3LL9 A;  2X2W A;  3ZZH A;  1OH9 A;  3QUO A;  3B8G A;  3KZF A;  3AB2 A;  3L86 A;  2JI5 A;  4NDP A;  3QVH A;  4NDQ B;  1B7B A;  4NDP B;  2J0W A;  2J4J A;  2V5H A;  2E9Y A;  4JZ8 A;  2AP9 A;  3K4Y A;  4NDO A;  3K56 A;  2A1F A;  3K52 A;  2R98 A;  3D41 A;  3LL5 A;  3D2P A;  1Z9D A;  1OHB A;  2BRX A;  3S6H A;  3AB4 A;  3ZZI A;  3ZZF A;  2VA1 A;  2WXB A;  4AB7 A;  2BND A;  4A7X A;  2BRI A;  1GSJ A;  2WE4 A;  3EK6 A;  3L76 A;  3TVI A;  3S6K A;  2J4K A;  3U6U A;  2W21 A;  2BMU A;  4NDO B;  3QUR A;  2IJ9 A;  3D40 A;  4NDR A;  3T7B A;  2J5T A; 
#chains in the Genus database with same CATH homology
 2RD5 A;  4OLC A;  3D2M A;  4KZT A;  4JZ7 A;  4I49 A;  2BNE A;  2HMF A;  2BTY A;  2R8V A;  2V4Y A;  4JZ9 A;  3LKK A;  3C1M A;  4AXS A;  3WWN A;  3QVF A;  3C20 A;  2JJX A;  3EK5 A;  2J0X A;  3QUN A;  2BNF A;  4NDQ A;  2JJ4 A;  1E19 A;  3NWY A;  2OGX A;  2BUF A;  4NDR B;  3WWM A;  3S6G A;  3ZZG A;  2OGX B;  4Q1T A;  2J5V A;  3K4O A;  2AKO A;  1GS5 A;  2WE5 A;  2J4L A;  4F6T A;  2CDQ A;  1OHA A;  4USJ A;  4F6T B;  1YBD A;  4A7W A;  3C1N A;  3AAW A;  3LL9 A;  2X2W A;  3ZZH A;  1OH9 A;  3QUO A;  3B8G A;  3KZF A;  3AB2 A;  3L86 A;  2JI5 A;  4NDP A;  3QVH A;  4NDQ B;  1B7B A;  4NDP B;  2J0W A;  2J4J A;  2V5H A;  2E9Y A;  4JZ8 A;  2AP9 A;  3K4Y A;  4NDO A;  3K56 A;  2A1F A;  3K52 A;  2R98 A;  3D41 A;  3LL5 A;  3D2P A;  1Z9D A;  1OHB A;  2BRX A;  3S6H A;  3AB4 A;  3ZZI A;  3ZZF A;  2VA1 A;  2WXB A;  4AB7 A;  2BND A;  4A7X A;  2BRI A;  1GSJ A;  2WE4 A;  3EK6 A;  3L76 A;  3TVI A;  3S6K A;  2J4K A;  3U6U A;  2W21 A;  2BMU A;  4NDO B;  3QUR A;  2IJ9 A;  3D40 A;  4NDR A;  3T7B A;  2J5T A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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