3K52A

Crystal structure of isopentenyl phosphate kinase from m. jannaschii in complex with ip
Total Genus 80
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
80
sequence length
260
structure length
260
Chain Sequence
MLTILKLGGSILSDKNVPYSIKWDNLERIAMEIKNALDYYKNQNKEIKLILVHGGGAFGHPVAKKYLKIEDGKKIFINMEKGFWEIQRAMRRFNNIIIDTLQSYDIPAVSIQPSSFVVFGDKLIFDTSAIKEMLKRNLVPVIHGDIVIDDKNGYRIISGDDIVPYLANELKADLILYATDVDGVLIDNKPIKRIDKNNIYKILNYLSGSNSIDVTGGMKYKIEMIRKNKCRGFVFNGNKANNIYKALLGEVEGTEIDFSE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Mutation of archaeal isopentenyl phosphate kinase highlights mechanism and guides phosphorylation of additional isoprenoid monophosphates.
pubmed doi rcsb
source organism Methanocaldococcus jannaschii
molecule tags Transferase
molecule keywords isopentenyl phosphate kinase
total genus 80
structure length 260
sequence length 260
chains with identical sequence B
ec nomenclature ec 2.7.4.26: Isopentenyl phosphate kinase.
pdb deposition date 2009-10-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 3k52A00
3K4OA 3LL5A 4NDPB 3C1NA 2WE5A 2CDQA 1E19A 4AXSA 2BMUA 3S6GA 3C1MA 4NDPA 2R98A 3QVHA 3AB2A 4NDOA 3WWNA 2OGXB 2J0WA 3S6KA 2BNEA 2OGXA 4NDRA 4NDOB 4NDQB 2WXBA 3NWYA 2J5VA 3D41A 2J4KA 2V4YA 3T7BA 2AP9A 3U6UA 2J5TA 4JZ7A 3S6HA 2WE4A 2W21A 2E9YA 2JI5A 3K52A 3L86A 2BNFA 2JJ4A 1YBDA 4OLCA 3D2MA 1GS5A 3ZZHA 1Z9DA 2BNDA 3D2PA 4USJA 2HMFA 4JZ9A 3B8GA 4KZTA 4AB7A 1GSJA 3WWMA 2AKOA 2A1FA 3AB4A 3KZFA 3LKKA 3ZZFA 4A7WA 2RD5A 4F6TA 2BRXA 2BUFA 2BTYA 1OHAA 3ZZIA 4NDRB 3L76A 3LL9A 1OH9A 3C20A 3QUNA 1OHBA 4NDQA 3QVFA 2J4JA 3EK5A 3K56A 2VA1A 3AAWA 2X2WA 3QUOA 2BRIA 4I49A 2J0XA 3QURA 4F6TB 2R8VA 2IJ9A 4Q1TA 1B7BA 2V5HA 3EK6A 2JJXA 3D40A 3ZZGA 2J4LA 4A7XA 4JZ8A 3TVIA 3K4YA
chains in the Genus database with same CATH superfamily
3K4OA 3LL5A 4NDPB 3C1NA 2WE5A 2CDQA 1E19A 4AXSA 2BMUA 3S6GA 3C1MA 4NDPA 2R98A 3QVHA 3AB2A 4NDOA 3WWNA 2OGXB 2J0WA 3S6KA 2BNEA 2OGXA 4NDRA 4NDOB 4NDQB 2WXBA 3NWYA 2J5VA 3D41A 2J4KA 2V4YA 3T7BA 2AP9A 3U6UA 2J5TA 4JZ7A 3S6HA 2WE4A 2W21A 2E9YA 2JI5A 3K52A 3L86A 2BNFA 2JJ4A 1YBDA 4OLCA 3D2MA 1GS5A 3ZZHA 1Z9DA 2BNDA 3D2PA 4USJA 2HMFA 4JZ9A 3B8GA 4KZTA 4AB7A 1GSJA 3WWMA 2AKOA 2A1FA 3AB4A 3KZFA 3LKKA 3ZZFA 4A7WA 2RD5A 4F6TA 2BRXA 2BUFA 2BTYA 1OHAA 3ZZIA 4NDRB 3L76A 3LL9A 1OH9A 3C20A 3QUNA 1OHBA 4NDQA 3QVFA 2J4JA 3EK5A 3K56A 2VA1A 3AAWA 2X2WA 3QUOA 2BRIA 4I49A 2J0XA 3QURA 4F6TB 2R8VA 2IJ9A 4Q1TA 1B7BA 2V5HA 3EK6A 2JJXA 3D40A 3ZZGA 2J4LA 4A7XA 4JZ8A 3TVIA 3K4YA
chains in the Genus database with same CATH topology
3K4OA 3LL5A 4NDPB 3C1NA 2WE5A 2CDQA 1E19A 4AXSA 2BMUA 3S6GA 3C1MA 4NDPA 2R98A 3QVHA 3AB2A 4NDOA 3WWNA 2OGXB 2J0WA 3S6KA 2BNEA 2OGXA 4NDRA 4NDOB 4NDQB 2WXBA 3NWYA 2J5VA 3D41A 2J4KA 2V4YA 3T7BA 2AP9A 3U6UA 2J5TA 4JZ7A 3S6HA 2WE4A 2W21A 2E9YA 2JI5A 3K52A 3L86A 2BNFA 2JJ4A 1YBDA 4OLCA 3D2MA 1GS5A 3ZZHA 1Z9DA 2BNDA 3D2PA 4USJA 2HMFA 4JZ9A 3B8GA 4KZTA 4AB7A 1GSJA 3WWMA 2AKOA 2A1FA 3AB4A 3KZFA 3LKKA 3ZZFA 4A7WA 2RD5A 4F6TA 2BRXA 2BUFA 2BTYA 1OHAA 3ZZIA 4NDRB 3L76A 3LL9A 1OH9A 3C20A 3QUNA 1OHBA 4NDQA 3QVFA 2J4JA 3EK5A 3K56A 2VA1A 3AAWA 2X2WA 3QUOA 2BRIA 4I49A 2J0XA 3QURA 4F6TB 2R8VA 2IJ9A 4Q1TA 1B7BA 2V5HA 3EK6A 2JJXA 3D40A 3ZZGA 2J4LA 4A7XA 4JZ8A 3TVIA 3K4YA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3K4O A;  3LL5 A;  4NDP B;  3C1N A;  2WE5 A;  2CDQ A;  1E19 A;  4AXS A;  2BMU A;  3S6G A;  3C1M A;  4NDP A;  2R98 A;  3QVH A;  3AB2 A;  4NDO A;  3WWN A;  2OGX B;  2J0W A;  3S6K A;  2BNE A;  2OGX A;  4NDR A;  4NDO B;  4NDQ B;  2WXB A;  3NWY A;  2J5V A;  3D41 A;  2J4K A;  2V4Y A;  3T7B A;  2AP9 A;  3U6U A;  2J5T A;  4JZ7 A;  3S6H A;  2WE4 A;  2W21 A;  2E9Y A;  2JI5 A;  3K52 A;  3L86 A;  2BNF A;  2JJ4 A;  1YBD A;  4OLC A;  3D2M A;  1GS5 A;  3ZZH A;  1Z9D A;  2BND A;  3D2P A;  4USJ A;  2HMF A;  4JZ9 A;  3B8G A;  4KZT A;  4AB7 A;  1GSJ A;  3WWM A;  2AKO A;  2A1F A;  3AB4 A;  3KZF A;  3LKK A;  3ZZF A;  4A7W A;  2RD5 A;  4F6T A;  2BRX A;  2BUF A;  2BTY A;  1OHA A;  3ZZI A;  4NDR B;  3L76 A;  3LL9 A;  1OH9 A;  3C20 A;  3QUN A;  1OHB A;  4NDQ A;  3QVF A;  2J4J A;  3EK5 A;  3K56 A;  2VA1 A;  3AAW A;  2X2W A;  3QUO A;  2BRI A;  4I49 A;  2J0X A;  3QUR A;  4F6T B;  2R8V A;  2IJ9 A;  4Q1T A;  1B7B A;  2V5H A;  3EK6 A;  2JJX A;  3D40 A;  3ZZG A;  2J4L A;  4A7X A;  4JZ8 A;  3TVI A;  3K4Y A; 
#chains in the Genus database with same CATH topology
 3K4O A;  3LL5 A;  4NDP B;  3C1N A;  2WE5 A;  2CDQ A;  1E19 A;  4AXS A;  2BMU A;  3S6G A;  3C1M A;  4NDP A;  2R98 A;  3QVH A;  3AB2 A;  4NDO A;  3WWN A;  2OGX B;  2J0W A;  3S6K A;  2BNE A;  2OGX A;  4NDR A;  4NDO B;  4NDQ B;  2WXB A;  3NWY A;  2J5V A;  3D41 A;  2J4K A;  2V4Y A;  3T7B A;  2AP9 A;  3U6U A;  2J5T A;  4JZ7 A;  3S6H A;  2WE4 A;  2W21 A;  2E9Y A;  2JI5 A;  3K52 A;  3L86 A;  2BNF A;  2JJ4 A;  1YBD A;  4OLC A;  3D2M A;  1GS5 A;  3ZZH A;  1Z9D A;  2BND A;  3D2P A;  4USJ A;  2HMF A;  4JZ9 A;  3B8G A;  4KZT A;  4AB7 A;  1GSJ A;  3WWM A;  2AKO A;  2A1F A;  3AB4 A;  3KZF A;  3LKK A;  3ZZF A;  4A7W A;  2RD5 A;  4F6T A;  2BRX A;  2BUF A;  2BTY A;  1OHA A;  3ZZI A;  4NDR B;  3L76 A;  3LL9 A;  1OH9 A;  3C20 A;  3QUN A;  1OHB A;  4NDQ A;  3QVF A;  2J4J A;  3EK5 A;  3K56 A;  2VA1 A;  3AAW A;  2X2W A;  3QUO A;  2BRI A;  4I49 A;  2J0X A;  3QUR A;  4F6T B;  2R8V A;  2IJ9 A;  4Q1T A;  1B7B A;  2V5H A;  3EK6 A;  2JJX A;  3D40 A;  3ZZG A;  2J4L A;  4A7X A;  4JZ8 A;  3TVI A;  3K4Y A; 
#chains in the Genus database with same CATH homology
 3K4O A;  3LL5 A;  4NDP B;  3C1N A;  2WE5 A;  2CDQ A;  1E19 A;  4AXS A;  2BMU A;  3S6G A;  3C1M A;  4NDP A;  2R98 A;  3QVH A;  3AB2 A;  4NDO A;  3WWN A;  2OGX B;  2J0W A;  3S6K A;  2BNE A;  2OGX A;  4NDR A;  4NDO B;  4NDQ B;  2WXB A;  3NWY A;  2J5V A;  3D41 A;  2J4K A;  2V4Y A;  3T7B A;  2AP9 A;  3U6U A;  2J5T A;  4JZ7 A;  3S6H A;  2WE4 A;  2W21 A;  2E9Y A;  2JI5 A;  3K52 A;  3L86 A;  2BNF A;  2JJ4 A;  1YBD A;  4OLC A;  3D2M A;  1GS5 A;  3ZZH A;  1Z9D A;  2BND A;  3D2P A;  4USJ A;  2HMF A;  4JZ9 A;  3B8G A;  4KZT A;  4AB7 A;  1GSJ A;  3WWM A;  2AKO A;  2A1F A;  3AB4 A;  3KZF A;  3LKK A;  3ZZF A;  4A7W A;  2RD5 A;  4F6T A;  2BRX A;  2BUF A;  2BTY A;  1OHA A;  3ZZI A;  4NDR B;  3L76 A;  3LL9 A;  1OH9 A;  3C20 A;  3QUN A;  1OHB A;  4NDQ A;  3QVF A;  2J4J A;  3EK5 A;  3K56 A;  2VA1 A;  3AAW A;  2X2W A;  3QUO A;  2BRI A;  4I49 A;  2J0X A;  3QUR A;  4F6T B;  2R8V A;  2IJ9 A;  4Q1T A;  1B7B A;  2V5H A;  3EK6 A;  2JJX A;  3D40 A;  3ZZG A;  2J4L A;  4A7X A;  4JZ8 A;  3TVI A;  3K4Y A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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