3K52A

Crystal structure of isopentenyl phosphate kinase from m. jannaschii in complex with ip
Total Genus 80
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
80
sequence length
260
structure length
260
Chain Sequence
MLTILKLGGSILSDKNVPYSIKWDNLERIAMEIKNALDYYKNQNKEIKLILVHGGGAFGHPVAKKYLKIEDGKKIFINMEKGFWEIQRAMRRFNNIIIDTLQSYDIPAVSIQPSSFVVFGDKLIFDTSAIKEMLKRNLVPVIHGDIVIDDKNGYRIISGDDIVPYLANELKADLILYATDVDGVLIDNKPIKRIDKNNIYKILNYLSGSNSIDVTGGMKYKIEMIRKNKCRGFVFNGNKANNIYKALLGEVEGTEIDFSE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Mutation of archaeal isopentenyl phosphate kinase highlights mechanism and guides phosphorylation of additional isoprenoid monophosphates.
pubmed doi rcsb
source organism Methanocaldococcus jannaschii
molecule tags Transferase
molecule keywords isopentenyl phosphate kinase
total genus 80
structure length 260
sequence length 260
chains with identical sequence B
ec nomenclature ec 2.7.4.26: Isopentenyl phosphate kinase.
pdb deposition date 2009-10-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 3k52A00
3WWMA 2WE5A 3D40A 3C1NA 2BUFA 2HMFA 1Z9DA 3TVIA 3ZZGA 2OGXA 3C1MA 2J0XA 4JZ7A 4A7XA 2BNDA 2J5VA 3KZFA 2W21A 3D2MA 4NDRB 1OHBA 3WWNA 2J0WA 3K4YA 2JJXA 3D41A 2AP9A 2BMUA 4NDPB 3L86A 1B7BA 2J4JA 2AKOA 3AAWA 1GSJA 2BNFA 2VA1A 4NDOA 3QURA 2CDQA 3S6HA 4USJA 2A1FA 2J4KA 2BTYA 3AB4A 3U6UA 2R8VA 4NDQB 2J4LA 3EK5A 2V4YA 4A7WA 3EK6A 4KZTA 3LL9A 2WE4A 4I49A 4F6TB 3LKKA 2JJ4A 2V5HA 3L76A 4JZ8A 4OLCA 2X2WA 3ZZHA 3QVFA 3ZZIA 3ZZFA 2J5TA 3T7BA 1OHAA 1E19A 1OH9A 4AB7A 4NDQA 3D2PA 4JZ9A 3QVHA 4NDOB 4NDPA 3NWYA 2OGXB 2RD5A 1GS5A 2BRIA 2BRXA 3K4OA 2R98A 3K56A 2IJ9A 1YBDA 3S6KA 2WXBA 3K52A 3S6GA 2JI5A 3C20A 3AB2A 3QUOA 3QUNA 4F6TA 4AXSA 3LL5A 2BNEA 4Q1TA 2E9YA 3B8GA 4NDRA
chains in the Genus database with same CATH superfamily
3WWMA 2WE5A 3D40A 3C1NA 2BUFA 2HMFA 1Z9DA 3TVIA 3ZZGA 2OGXA 3C1MA 2J0XA 4JZ7A 4A7XA 2BNDA 2J5VA 3KZFA 2W21A 3D2MA 4NDRB 1OHBA 3WWNA 2J0WA 3K4YA 2JJXA 3D41A 2AP9A 2BMUA 4NDPB 3L86A 1B7BA 2J4JA 2AKOA 3AAWA 1GSJA 2BNFA 2VA1A 4NDOA 3QURA 2CDQA 3S6HA 4USJA 2A1FA 2J4KA 2BTYA 3AB4A 3U6UA 2R8VA 4NDQB 2J4LA 3EK5A 2V4YA 4A7WA 3EK6A 4KZTA 3LL9A 2WE4A 4I49A 4F6TB 3LKKA 2JJ4A 2V5HA 3L76A 4JZ8A 4OLCA 2X2WA 3ZZHA 3QVFA 3ZZIA 3ZZFA 2J5TA 3T7BA 1OHAA 1E19A 1OH9A 4AB7A 4NDQA 3D2PA 4JZ9A 3QVHA 4NDOB 4NDPA 3NWYA 2OGXB 2RD5A 1GS5A 2BRIA 2BRXA 3K4OA 2R98A 3K56A 2IJ9A 1YBDA 3S6KA 2WXBA 3K52A 3S6GA 2JI5A 3C20A 3AB2A 3QUOA 3QUNA 4F6TA 4AXSA 3LL5A 2BNEA 4Q1TA 2E9YA 3B8GA 4NDRA
chains in the Genus database with same CATH topology
3WWMA 2WE5A 3D40A 3C1NA 2BUFA 2HMFA 1Z9DA 3TVIA 3ZZGA 2OGXA 3C1MA 2J0XA 4JZ7A 4A7XA 2BNDA 2J5VA 3KZFA 2W21A 3D2MA 4NDRB 1OHBA 3WWNA 2J0WA 3K4YA 2JJXA 3D41A 2AP9A 2BMUA 4NDPB 3L86A 1B7BA 2J4JA 2AKOA 3AAWA 1GSJA 2BNFA 2VA1A 4NDOA 3QURA 2CDQA 3S6HA 4USJA 2A1FA 2J4KA 2BTYA 3AB4A 3U6UA 2R8VA 4NDQB 2J4LA 3EK5A 2V4YA 4A7WA 3EK6A 4KZTA 3LL9A 2WE4A 4I49A 4F6TB 3LKKA 2JJ4A 2V5HA 3L76A 4JZ8A 4OLCA 2X2WA 3ZZHA 3QVFA 3ZZIA 3ZZFA 2J5TA 3T7BA 1OHAA 1E19A 1OH9A 4AB7A 4NDQA 3D2PA 4JZ9A 3QVHA 4NDOB 4NDPA 3NWYA 2OGXB 2RD5A 1GS5A 2BRIA 2BRXA 3K4OA 2R98A 3K56A 2IJ9A 1YBDA 3S6KA 2WXBA 3K52A 3S6GA 2JI5A 3C20A 3AB2A 3QUOA 3QUNA 4F6TA 4AXSA 3LL5A 2BNEA 4Q1TA 2E9YA 3B8GA 4NDRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3WWM A;  2WE5 A;  3D40 A;  3C1N A;  2BUF A;  2HMF A;  1Z9D A;  3TVI A;  3ZZG A;  2OGX A;  3C1M A;  2J0X A;  4JZ7 A;  4A7X A;  2BND A;  2J5V A;  3KZF A;  2W21 A;  3D2M A;  4NDR B;  1OHB A;  3WWN A;  2J0W A;  3K4Y A;  2JJX A;  3D41 A;  2AP9 A;  2BMU A;  4NDP B;  3L86 A;  1B7B A;  2J4J A;  2AKO A;  3AAW A;  1GSJ A;  2BNF A;  2VA1 A;  4NDO A;  3QUR A;  2CDQ A;  3S6H A;  4USJ A;  2A1F A;  2J4K A;  2BTY A;  3AB4 A;  3U6U A;  2R8V A;  4NDQ B;  2J4L A;  3EK5 A;  2V4Y A;  4A7W A;  3EK6 A;  4KZT A;  3LL9 A;  2WE4 A;  4I49 A;  4F6T B;  3LKK A;  2JJ4 A;  2V5H A;  3L76 A;  4JZ8 A;  4OLC A;  2X2W A;  3ZZH A;  3QVF A;  3ZZI A;  3ZZF A;  2J5T A;  3T7B A;  1OHA A;  1E19 A;  1OH9 A;  4AB7 A;  4NDQ A;  3D2P A;  4JZ9 A;  3QVH A;  4NDO B;  4NDP A;  3NWY A;  2OGX B;  2RD5 A;  1GS5 A;  2BRI A;  2BRX A;  3K4O A;  2R98 A;  3K56 A;  2IJ9 A;  1YBD A;  3S6K A;  2WXB A;  3K52 A;  3S6G A;  2JI5 A;  3C20 A;  3AB2 A;  3QUO A;  3QUN A;  4F6T A;  4AXS A;  3LL5 A;  2BNE A;  4Q1T A;  2E9Y A;  3B8G A;  4NDR A; 
#chains in the Genus database with same CATH topology
 3WWM A;  2WE5 A;  3D40 A;  3C1N A;  2BUF A;  2HMF A;  1Z9D A;  3TVI A;  3ZZG A;  2OGX A;  3C1M A;  2J0X A;  4JZ7 A;  4A7X A;  2BND A;  2J5V A;  3KZF A;  2W21 A;  3D2M A;  4NDR B;  1OHB A;  3WWN A;  2J0W A;  3K4Y A;  2JJX A;  3D41 A;  2AP9 A;  2BMU A;  4NDP B;  3L86 A;  1B7B A;  2J4J A;  2AKO A;  3AAW A;  1GSJ A;  2BNF A;  2VA1 A;  4NDO A;  3QUR A;  2CDQ A;  3S6H A;  4USJ A;  2A1F A;  2J4K A;  2BTY A;  3AB4 A;  3U6U A;  2R8V A;  4NDQ B;  2J4L A;  3EK5 A;  2V4Y A;  4A7W A;  3EK6 A;  4KZT A;  3LL9 A;  2WE4 A;  4I49 A;  4F6T B;  3LKK A;  2JJ4 A;  2V5H A;  3L76 A;  4JZ8 A;  4OLC A;  2X2W A;  3ZZH A;  3QVF A;  3ZZI A;  3ZZF A;  2J5T A;  3T7B A;  1OHA A;  1E19 A;  1OH9 A;  4AB7 A;  4NDQ A;  3D2P A;  4JZ9 A;  3QVH A;  4NDO B;  4NDP A;  3NWY A;  2OGX B;  2RD5 A;  1GS5 A;  2BRI A;  2BRX A;  3K4O A;  2R98 A;  3K56 A;  2IJ9 A;  1YBD A;  3S6K A;  2WXB A;  3K52 A;  3S6G A;  2JI5 A;  3C20 A;  3AB2 A;  3QUO A;  3QUN A;  4F6T A;  4AXS A;  3LL5 A;  2BNE A;  4Q1T A;  2E9Y A;  3B8G A;  4NDR A; 
#chains in the Genus database with same CATH homology
 3WWM A;  2WE5 A;  3D40 A;  3C1N A;  2BUF A;  2HMF A;  1Z9D A;  3TVI A;  3ZZG A;  2OGX A;  3C1M A;  2J0X A;  4JZ7 A;  4A7X A;  2BND A;  2J5V A;  3KZF A;  2W21 A;  3D2M A;  4NDR B;  1OHB A;  3WWN A;  2J0W A;  3K4Y A;  2JJX A;  3D41 A;  2AP9 A;  2BMU A;  4NDP B;  3L86 A;  1B7B A;  2J4J A;  2AKO A;  3AAW A;  1GSJ A;  2BNF A;  2VA1 A;  4NDO A;  3QUR A;  2CDQ A;  3S6H A;  4USJ A;  2A1F A;  2J4K A;  2BTY A;  3AB4 A;  3U6U A;  2R8V A;  4NDQ B;  2J4L A;  3EK5 A;  2V4Y A;  4A7W A;  3EK6 A;  4KZT A;  3LL9 A;  2WE4 A;  4I49 A;  4F6T B;  3LKK A;  2JJ4 A;  2V5H A;  3L76 A;  4JZ8 A;  4OLC A;  2X2W A;  3ZZH A;  3QVF A;  3ZZI A;  3ZZF A;  2J5T A;  3T7B A;  1OHA A;  1E19 A;  1OH9 A;  4AB7 A;  4NDQ A;  3D2P A;  4JZ9 A;  3QVH A;  4NDO B;  4NDP A;  3NWY A;  2OGX B;  2RD5 A;  1GS5 A;  2BRI A;  2BRX A;  3K4O A;  2R98 A;  3K56 A;  2IJ9 A;  1YBD A;  3S6K A;  2WXB A;  3K52 A;  3S6G A;  2JI5 A;  3C20 A;  3AB2 A;  3QUO A;  3QUN A;  4F6T A;  4AXS A;  3LL5 A;  2BNE A;  4Q1T A;  2E9Y A;  3B8G A;  4NDR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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