4AXSA

Structure of carbamate kinase from mycoplasma penetrans
Total Genus 78
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
307
structure length
291
Chain Sequence
RIVIALGGNALGDNPSQQKELVKIPAAKIAALIQEGHEVIVGHGNGPQVGMIFNAFADAKKANEKTALVPFAEAGGMSQGYIGYHMLTAISNELKKLNIQKDVLYFLTQTIVDANDPAFKNPTKPVGPFYSNPNSVIVKVVASPIPVDFIGIDAIKQNVNNGCVCIVGGGGGIPTIIQDNQYIGVDGVIDKDFALAKIADAVNADIFVVLTAVDYVYVDFNKPTQKALKTVDVKALNNFINQDQFAKGSMLPKIKAAMGFVNGHPNRSAIIADLSKVEDALKGLSGTKIIA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords CARBAMATE KINASE
publication title Structural Characterization of the Enzymes Composing the Arginine Deiminase Pathway in Mycoplasma Penetrans.
pubmed doi rcsb
source organism Mycoplasma penetrans
molecule tags Oxidoreductase
total genus 78
structure length 291
sequence length 307
ec nomenclature
pdb deposition date 2012-06-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 4axsA00
2BTYA 2R98A 4NDPB 4NDRA 3S6HA 2VA1A 2AP9A 1OHBA 4NDPA 3S6KA 2BRIA 2J4LA 2E9YA 2BMUA 4AXSA 3S6GA 2R8VA 2BUFA 3K4OA 1YBDA 2V4YA 2HMFA 2J0WA 3K4YA 3QUOA 1E19A 4NDOB 4OLCA 3EK5A 4NDOA 3C1MA 3L86A 3U6UA 4F6TB 4JZ9A 1OH9A 2J0XA 3KZFA 3NWYA 3AB4A 2W21A 4F6TA 2CDQA 2OGXB 2J4JA 3AAWA 2OGXA 2A1FA 3ZZHA 2AKOA 3D40A 3T7BA 2WXBA 4NDQB 2V5HA 3ZZGA 3D2MA 4I49A 1OHAA 4NDQA 4A7XA 3L76A 2BRXA 3WWNA 4JZ7A 4AB7A 2WE4A 2J5VA 3EK6A 3K56A 2X2WA 3ZZIA 2IJ9A 4USJA 4A7WA 2JJ4A 3D41A 1B7BA 3K52A 3QVFA 1GS5A 3AB2A 3LL9A 3B8GA 3D2PA 4JZ8A 3LKKA 2BNFA 3LL5A 4Q1TA 3QURA 2WE5A 2JJXA 2JI5A 2J4KA 2BNDA 3C1NA 3QVHA 2J5TA 4KZTA 3ZZFA 3C20A 3QUNA 2BNEA 3WWMA 1Z9DA 2RD5A 1GSJA 4NDRB 3TVIA
chains in the Genus database with same CATH superfamily
2BTYA 2R98A 4NDPB 4NDRA 3S6HA 2VA1A 2AP9A 1OHBA 4NDPA 3S6KA 2BRIA 2J4LA 2E9YA 2BMUA 4AXSA 3S6GA 2R8VA 2BUFA 3K4OA 1YBDA 2V4YA 2HMFA 2J0WA 3K4YA 3QUOA 1E19A 4NDOB 4OLCA 3EK5A 4NDOA 3C1MA 3L86A 3U6UA 4F6TB 4JZ9A 1OH9A 2J0XA 3KZFA 3NWYA 3AB4A 2W21A 4F6TA 2CDQA 2OGXB 2J4JA 3AAWA 2OGXA 2A1FA 3ZZHA 2AKOA 3D40A 3T7BA 2WXBA 4NDQB 2V5HA 3ZZGA 3D2MA 4I49A 1OHAA 4NDQA 4A7XA 3L76A 2BRXA 3WWNA 4JZ7A 4AB7A 2WE4A 2J5VA 3EK6A 3K56A 2X2WA 3ZZIA 2IJ9A 4USJA 4A7WA 2JJ4A 3D41A 1B7BA 3K52A 3QVFA 1GS5A 3AB2A 3LL9A 3B8GA 3D2PA 4JZ8A 3LKKA 2BNFA 3LL5A 4Q1TA 3QURA 2WE5A 2JJXA 2JI5A 2J4KA 2BNDA 3C1NA 3QVHA 2J5TA 4KZTA 3ZZFA 3C20A 3QUNA 2BNEA 3WWMA 1Z9DA 2RD5A 1GSJA 4NDRB 3TVIA
chains in the Genus database with same CATH topology
2BTYA 2R98A 4NDPB 4NDRA 3S6HA 2VA1A 2AP9A 1OHBA 4NDPA 3S6KA 2BRIA 2J4LA 2E9YA 2BMUA 4AXSA 3S6GA 2R8VA 2BUFA 3K4OA 1YBDA 2V4YA 2HMFA 2J0WA 3K4YA 3QUOA 1E19A 4NDOB 4OLCA 3EK5A 4NDOA 3C1MA 3L86A 3U6UA 4F6TB 4JZ9A 1OH9A 2J0XA 3KZFA 3NWYA 3AB4A 2W21A 4F6TA 2CDQA 2OGXB 2J4JA 3AAWA 2OGXA 2A1FA 3ZZHA 2AKOA 3D40A 3T7BA 2WXBA 4NDQB 2V5HA 3ZZGA 3D2MA 4I49A 1OHAA 4NDQA 4A7XA 3L76A 2BRXA 3WWNA 4JZ7A 4AB7A 2WE4A 2J5VA 3EK6A 3K56A 2X2WA 3ZZIA 2IJ9A 4USJA 4A7WA 2JJ4A 3D41A 1B7BA 3K52A 3QVFA 1GS5A 3AB2A 3LL9A 3B8GA 3D2PA 4JZ8A 3LKKA 2BNFA 3LL5A 4Q1TA 3QURA 2WE5A 2JJXA 2JI5A 2J4KA 2BNDA 3C1NA 3QVHA 2J5TA 4KZTA 3ZZFA 3C20A 3QUNA 2BNEA 3WWMA 1Z9DA 2RD5A 1GSJA 4NDRB 3TVIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BTY A;  2R98 A;  4NDP B;  4NDR A;  3S6H A;  2VA1 A;  2AP9 A;  1OHB A;  4NDP A;  3S6K A;  2BRI A;  2J4L A;  2E9Y A;  2BMU A;  4AXS A;  3S6G A;  2R8V A;  2BUF A;  3K4O A;  1YBD A;  2V4Y A;  2HMF A;  2J0W A;  3K4Y A;  3QUO A;  1E19 A;  4NDO B;  4OLC A;  3EK5 A;  4NDO A;  3C1M A;  3L86 A;  3U6U A;  4F6T B;  4JZ9 A;  1OH9 A;  2J0X A;  3KZF A;  3NWY A;  3AB4 A;  2W21 A;  4F6T A;  2CDQ A;  2OGX B;  2J4J A;  3AAW A;  2OGX A;  2A1F A;  3ZZH A;  2AKO A;  3D40 A;  3T7B A;  2WXB A;  4NDQ B;  2V5H A;  3ZZG A;  3D2M A;  4I49 A;  1OHA A;  4NDQ A;  4A7X A;  3L76 A;  2BRX A;  3WWN A;  4JZ7 A;  4AB7 A;  2WE4 A;  2J5V A;  3EK6 A;  3K56 A;  2X2W A;  3ZZI A;  2IJ9 A;  4USJ A;  4A7W A;  2JJ4 A;  3D41 A;  1B7B A;  3K52 A;  3QVF A;  1GS5 A;  3AB2 A;  3LL9 A;  3B8G A;  3D2P A;  4JZ8 A;  3LKK A;  2BNF A;  3LL5 A;  4Q1T A;  3QUR A;  2WE5 A;  2JJX A;  2JI5 A;  2J4K A;  2BND A;  3C1N A;  3QVH A;  2J5T A;  4KZT A;  3ZZF A;  3C20 A;  3QUN A;  2BNE A;  3WWM A;  1Z9D A;  2RD5 A;  1GSJ A;  4NDR B;  3TVI A; 
#chains in the Genus database with same CATH topology
 2BTY A;  2R98 A;  4NDP B;  4NDR A;  3S6H A;  2VA1 A;  2AP9 A;  1OHB A;  4NDP A;  3S6K A;  2BRI A;  2J4L A;  2E9Y A;  2BMU A;  4AXS A;  3S6G A;  2R8V A;  2BUF A;  3K4O A;  1YBD A;  2V4Y A;  2HMF A;  2J0W A;  3K4Y A;  3QUO A;  1E19 A;  4NDO B;  4OLC A;  3EK5 A;  4NDO A;  3C1M A;  3L86 A;  3U6U A;  4F6T B;  4JZ9 A;  1OH9 A;  2J0X A;  3KZF A;  3NWY A;  3AB4 A;  2W21 A;  4F6T A;  2CDQ A;  2OGX B;  2J4J A;  3AAW A;  2OGX A;  2A1F A;  3ZZH A;  2AKO A;  3D40 A;  3T7B A;  2WXB A;  4NDQ B;  2V5H A;  3ZZG A;  3D2M A;  4I49 A;  1OHA A;  4NDQ A;  4A7X A;  3L76 A;  2BRX A;  3WWN A;  4JZ7 A;  4AB7 A;  2WE4 A;  2J5V A;  3EK6 A;  3K56 A;  2X2W A;  3ZZI A;  2IJ9 A;  4USJ A;  4A7W A;  2JJ4 A;  3D41 A;  1B7B A;  3K52 A;  3QVF A;  1GS5 A;  3AB2 A;  3LL9 A;  3B8G A;  3D2P A;  4JZ8 A;  3LKK A;  2BNF A;  3LL5 A;  4Q1T A;  3QUR A;  2WE5 A;  2JJX A;  2JI5 A;  2J4K A;  2BND A;  3C1N A;  3QVH A;  2J5T A;  4KZT A;  3ZZF A;  3C20 A;  3QUN A;  2BNE A;  3WWM A;  1Z9D A;  2RD5 A;  1GSJ A;  4NDR B;  3TVI A; 
#chains in the Genus database with same CATH homology
 2BTY A;  2R98 A;  4NDP B;  4NDR A;  3S6H A;  2VA1 A;  2AP9 A;  1OHB A;  4NDP A;  3S6K A;  2BRI A;  2J4L A;  2E9Y A;  2BMU A;  4AXS A;  3S6G A;  2R8V A;  2BUF A;  3K4O A;  1YBD A;  2V4Y A;  2HMF A;  2J0W A;  3K4Y A;  3QUO A;  1E19 A;  4NDO B;  4OLC A;  3EK5 A;  4NDO A;  3C1M A;  3L86 A;  3U6U A;  4F6T B;  4JZ9 A;  1OH9 A;  2J0X A;  3KZF A;  3NWY A;  3AB4 A;  2W21 A;  4F6T A;  2CDQ A;  2OGX B;  2J4J A;  3AAW A;  2OGX A;  2A1F A;  3ZZH A;  2AKO A;  3D40 A;  3T7B A;  2WXB A;  4NDQ B;  2V5H A;  3ZZG A;  3D2M A;  4I49 A;  1OHA A;  4NDQ A;  4A7X A;  3L76 A;  2BRX A;  3WWN A;  4JZ7 A;  4AB7 A;  2WE4 A;  2J5V A;  3EK6 A;  3K56 A;  2X2W A;  3ZZI A;  2IJ9 A;  4USJ A;  4A7W A;  2JJ4 A;  3D41 A;  1B7B A;  3K52 A;  3QVF A;  1GS5 A;  3AB2 A;  3LL9 A;  3B8G A;  3D2P A;  4JZ8 A;  3LKK A;  2BNF A;  3LL5 A;  4Q1T A;  3QUR A;  2WE5 A;  2JJX A;  2JI5 A;  2J4K A;  2BND A;  3C1N A;  3QVH A;  2J5T A;  4KZT A;  3ZZF A;  3C20 A;  3QUN A;  2BNE A;  3WWM A;  1Z9D A;  2RD5 A;  1GSJ A;  4NDR B;  3TVI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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