4AXSA

Structure of carbamate kinase from mycoplasma penetrans
Total Genus 78
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
307
structure length
291
Chain Sequence
RIVIALGGNALGDNPSQQKELVKIPAAKIAALIQEGHEVIVGHGNGPQVGMIFNAFADAKKANEKTALVPFAEAGGMSQGYIGYHMLTAISNELKKLNIQKDVLYFLTQTIVDANDPAFKNPTKPVGPFYSNPNSVIVKVVASPIPVDFIGIDAIKQNVNNGCVCIVGGGGGIPTIIQDNQYIGVDGVIDKDFALAKIADAVNADIFVVLTAVDYVYVDFNKPTQKALKTVDVKALNNFINQDQFAKGSMLPKIKAAMGFVNGHPNRSAIIADLSKVEDALKGLSGTKIIA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural Characterization of the Enzymes Composing the Arginine Deiminase Pathway in Mycoplasma Penetrans.
pubmed doi rcsb
source organism Mycoplasma penetrans
molecule tags Oxidoreductase
molecule keywords CARBAMATE KINASE
total genus 78
structure length 291
sequence length 307
ec nomenclature
pdb deposition date 2012-06-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 4axsA00
4Q1TA 4NDQB 3C1NA 2BUFA 1YBDA 3EK6A 3T7BA 2J4JA 2WXBA 1OHBA 3WWNA 2CDQA 3D40A 3D2PA 3QUOA 3C1MA 3K56A 2R98A 3LKKA 2OGXA 3D41A 3K4OA 2J0WA 4NDPA 4USJA 3S6GA 2A1FA 3ZZIA 2J5TA 2X2WA 3NWYA 3LL9A 4NDRA 4KZTA 3ZZGA 3B8GA 2E9YA 2BRIA 2BRXA 3S6HA 3AB2A 1OHAA 4AB7A 3LL5A 2AP9A 3ZZFA 1E19A 3K4YA 3S6KA 1GSJA 3ZZHA 4F6TA 2BTYA 4NDOB 3QUNA 4A7WA 2BNEA 2J0XA 2IJ9A 3TVIA 3AAWA 3EK5A 3KZFA 4NDOA 2J5VA 1Z9DA 4NDRB 4JZ8A 2AKOA 3L86A 2JI5A 1OH9A 4F6TB 2HMFA 2BNDA 3U6UA 1B7BA 2V5HA 4I49A 2RD5A 4JZ7A 2JJ4A 4NDPB 2R8VA 3C20A 2BMUA 2J4LA 2V4YA 4OLCA 2VA1A 3WWMA 4AXSA 1GS5A 4A7XA 2WE4A 3D2MA 2JJXA 4JZ9A 3AB4A 3K52A 2BNFA 2J4KA 3L76A 3QVFA 3QVHA 4NDQA 2WE5A 3QURA 2W21A 2OGXB
chains in the Genus database with same CATH superfamily
4Q1TA 4NDQB 3C1NA 2BUFA 1YBDA 3EK6A 3T7BA 2J4JA 2WXBA 1OHBA 3WWNA 2CDQA 3D40A 3D2PA 3QUOA 3C1MA 3K56A 2R98A 3LKKA 2OGXA 3D41A 3K4OA 2J0WA 4NDPA 4USJA 3S6GA 2A1FA 3ZZIA 2J5TA 2X2WA 3NWYA 3LL9A 4NDRA 4KZTA 3ZZGA 3B8GA 2E9YA 2BRIA 2BRXA 3S6HA 3AB2A 1OHAA 4AB7A 3LL5A 2AP9A 3ZZFA 1E19A 3K4YA 3S6KA 1GSJA 3ZZHA 4F6TA 2BTYA 4NDOB 3QUNA 4A7WA 2BNEA 2J0XA 2IJ9A 3TVIA 3AAWA 3EK5A 3KZFA 4NDOA 2J5VA 1Z9DA 4NDRB 4JZ8A 2AKOA 3L86A 2JI5A 1OH9A 4F6TB 2HMFA 2BNDA 3U6UA 1B7BA 2V5HA 4I49A 2RD5A 4JZ7A 2JJ4A 4NDPB 2R8VA 3C20A 2BMUA 2J4LA 2V4YA 4OLCA 2VA1A 3WWMA 4AXSA 1GS5A 4A7XA 2WE4A 3D2MA 2JJXA 4JZ9A 3AB4A 3K52A 2BNFA 2J4KA 3L76A 3QVFA 3QVHA 4NDQA 2WE5A 3QURA 2W21A 2OGXB
chains in the Genus database with same CATH topology
4Q1TA 4NDQB 3C1NA 2BUFA 1YBDA 3EK6A 3T7BA 2J4JA 2WXBA 1OHBA 3WWNA 2CDQA 3D40A 3D2PA 3QUOA 3C1MA 3K56A 2R98A 3LKKA 2OGXA 3D41A 3K4OA 2J0WA 4NDPA 4USJA 3S6GA 2A1FA 3ZZIA 2J5TA 2X2WA 3NWYA 3LL9A 4NDRA 4KZTA 3ZZGA 3B8GA 2E9YA 2BRIA 2BRXA 3S6HA 3AB2A 1OHAA 4AB7A 3LL5A 2AP9A 3ZZFA 1E19A 3K4YA 3S6KA 1GSJA 3ZZHA 4F6TA 2BTYA 4NDOB 3QUNA 4A7WA 2BNEA 2J0XA 2IJ9A 3TVIA 3AAWA 3EK5A 3KZFA 4NDOA 2J5VA 1Z9DA 4NDRB 4JZ8A 2AKOA 3L86A 2JI5A 1OH9A 4F6TB 2HMFA 2BNDA 3U6UA 1B7BA 2V5HA 4I49A 2RD5A 4JZ7A 2JJ4A 4NDPB 2R8VA 3C20A 2BMUA 2J4LA 2V4YA 4OLCA 2VA1A 3WWMA 4AXSA 1GS5A 4A7XA 2WE4A 3D2MA 2JJXA 4JZ9A 3AB4A 3K52A 2BNFA 2J4KA 3L76A 3QVFA 3QVHA 4NDQA 2WE5A 3QURA 2W21A 2OGXB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4Q1T A;  4NDQ B;  3C1N A;  2BUF A;  1YBD A;  3EK6 A;  3T7B A;  2J4J A;  2WXB A;  1OHB A;  3WWN A;  2CDQ A;  3D40 A;  3D2P A;  3QUO A;  3C1M A;  3K56 A;  2R98 A;  3LKK A;  2OGX A;  3D41 A;  3K4O A;  2J0W A;  4NDP A;  4USJ A;  3S6G A;  2A1F A;  3ZZI A;  2J5T A;  2X2W A;  3NWY A;  3LL9 A;  4NDR A;  4KZT A;  3ZZG A;  3B8G A;  2E9Y A;  2BRI A;  2BRX A;  3S6H A;  3AB2 A;  1OHA A;  4AB7 A;  3LL5 A;  2AP9 A;  3ZZF A;  1E19 A;  3K4Y A;  3S6K A;  1GSJ A;  3ZZH A;  4F6T A;  2BTY A;  4NDO B;  3QUN A;  4A7W A;  2BNE A;  2J0X A;  2IJ9 A;  3TVI A;  3AAW A;  3EK5 A;  3KZF A;  4NDO A;  2J5V A;  1Z9D A;  4NDR B;  4JZ8 A;  2AKO A;  3L86 A;  2JI5 A;  1OH9 A;  4F6T B;  2HMF A;  2BND A;  3U6U A;  1B7B A;  2V5H A;  4I49 A;  2RD5 A;  4JZ7 A;  2JJ4 A;  4NDP B;  2R8V A;  3C20 A;  2BMU A;  2J4L A;  2V4Y A;  4OLC A;  2VA1 A;  3WWM A;  4AXS A;  1GS5 A;  4A7X A;  2WE4 A;  3D2M A;  2JJX A;  4JZ9 A;  3AB4 A;  3K52 A;  2BNF A;  2J4K A;  3L76 A;  3QVF A;  3QVH A;  4NDQ A;  2WE5 A;  3QUR A;  2W21 A;  2OGX B; 
#chains in the Genus database with same CATH topology
 4Q1T A;  4NDQ B;  3C1N A;  2BUF A;  1YBD A;  3EK6 A;  3T7B A;  2J4J A;  2WXB A;  1OHB A;  3WWN A;  2CDQ A;  3D40 A;  3D2P A;  3QUO A;  3C1M A;  3K56 A;  2R98 A;  3LKK A;  2OGX A;  3D41 A;  3K4O A;  2J0W A;  4NDP A;  4USJ A;  3S6G A;  2A1F A;  3ZZI A;  2J5T A;  2X2W A;  3NWY A;  3LL9 A;  4NDR A;  4KZT A;  3ZZG A;  3B8G A;  2E9Y A;  2BRI A;  2BRX A;  3S6H A;  3AB2 A;  1OHA A;  4AB7 A;  3LL5 A;  2AP9 A;  3ZZF A;  1E19 A;  3K4Y A;  3S6K A;  1GSJ A;  3ZZH A;  4F6T A;  2BTY A;  4NDO B;  3QUN A;  4A7W A;  2BNE A;  2J0X A;  2IJ9 A;  3TVI A;  3AAW A;  3EK5 A;  3KZF A;  4NDO A;  2J5V A;  1Z9D A;  4NDR B;  4JZ8 A;  2AKO A;  3L86 A;  2JI5 A;  1OH9 A;  4F6T B;  2HMF A;  2BND A;  3U6U A;  1B7B A;  2V5H A;  4I49 A;  2RD5 A;  4JZ7 A;  2JJ4 A;  4NDP B;  2R8V A;  3C20 A;  2BMU A;  2J4L A;  2V4Y A;  4OLC A;  2VA1 A;  3WWM A;  4AXS A;  1GS5 A;  4A7X A;  2WE4 A;  3D2M A;  2JJX A;  4JZ9 A;  3AB4 A;  3K52 A;  2BNF A;  2J4K A;  3L76 A;  3QVF A;  3QVH A;  4NDQ A;  2WE5 A;  3QUR A;  2W21 A;  2OGX B; 
#chains in the Genus database with same CATH homology
 4Q1T A;  4NDQ B;  3C1N A;  2BUF A;  1YBD A;  3EK6 A;  3T7B A;  2J4J A;  2WXB A;  1OHB A;  3WWN A;  2CDQ A;  3D40 A;  3D2P A;  3QUO A;  3C1M A;  3K56 A;  2R98 A;  3LKK A;  2OGX A;  3D41 A;  3K4O A;  2J0W A;  4NDP A;  4USJ A;  3S6G A;  2A1F A;  3ZZI A;  2J5T A;  2X2W A;  3NWY A;  3LL9 A;  4NDR A;  4KZT A;  3ZZG A;  3B8G A;  2E9Y A;  2BRI A;  2BRX A;  3S6H A;  3AB2 A;  1OHA A;  4AB7 A;  3LL5 A;  2AP9 A;  3ZZF A;  1E19 A;  3K4Y A;  3S6K A;  1GSJ A;  3ZZH A;  4F6T A;  2BTY A;  4NDO B;  3QUN A;  4A7W A;  2BNE A;  2J0X A;  2IJ9 A;  3TVI A;  3AAW A;  3EK5 A;  3KZF A;  4NDO A;  2J5V A;  1Z9D A;  4NDR B;  4JZ8 A;  2AKO A;  3L86 A;  2JI5 A;  1OH9 A;  4F6T B;  2HMF A;  2BND A;  3U6U A;  1B7B A;  2V5H A;  4I49 A;  2RD5 A;  4JZ7 A;  2JJ4 A;  4NDP B;  2R8V A;  3C20 A;  2BMU A;  2J4L A;  2V4Y A;  4OLC A;  2VA1 A;  3WWM A;  4AXS A;  1GS5 A;  4A7X A;  2WE4 A;  3D2M A;  2JJX A;  4JZ9 A;  3AB4 A;  3K52 A;  2BNF A;  2J4K A;  3L76 A;  3QVF A;  3QVH A;  4NDQ A;  2WE5 A;  3QUR A;  2W21 A;  2OGX B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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