4AXSA

Structure of carbamate kinase from mycoplasma penetrans
Total Genus 78
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
307
structure length
291
Chain Sequence
b'RIVIALGGNALGDNPSQQKELVKIPAAKIAALIQEGHEVIVGHGNGPQVGMIFNAFADAKKANEKTALVPFAEAGGMSQGYIGYHMLTAISNELKKLNIQKDVLYFLTQTIVDANDPAFKNPTKPVGPFYSNPNSVIVKVVASPIPVDFIGIDAIKQNVNNGCVCIVGGGGGIPTIIQDNQYIGVDGVIDKDFALAKIADAVNADIFVVLTAVDYVYVDFNKPTQKALKTVDVKALNNFINQDQFAKGSMLPKIKAAMGFVNGHPNRSAIIADLSKVEDALKGLSGTKIIA'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords CARBAMATE KINASE
publication title Structural Characterization of the Enzymes Composing the Arginine Deiminase Pathway in Mycoplasma Penetrans.
pubmed doi rcsb
source organism Mycoplasma penetrans
molecule tags Oxidoreductase
total genus 78
structure length 291
sequence length 307
ec nomenclature
pdb deposition date 2012-06-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 4axsA00
3K56A 2V5HA 3QURA 3L86A 3ZZGA 3QVHA 2J4LA 2BNEA 4A7WA 3ZZHA 3K4OA 4A7XA 4NDPB 4F6TA 3NWYA 3AAWA 3LL5A 3S6KA 4Q1TA 2R98A 2BTYA 4NDOA 3QUNA 3QVFA 3B8GA 3LKKA 4NDQA 3WWMA 3T7BA 2W21A 2AP9A 4AXSA 1E19A 4USJA 2BNDA 2J0WA 3AB4A 2WXBA 4NDRB 3C20A 3S6HA 2R8VA 3C1MA 2V4YA 1B7BA 3WWNA 3EK6A 3D2PA 1OHAA 2IJ9A 2AKOA 3D40A 2J0XA 3K52A 3QUOA 2J5TA 4NDPA 3KZFA 2JJXA 1Z9DA 1OHBA 3L76A 1GS5A 4JZ7A 2X2WA 3ZZFA 2BUFA 3EK5A 2J5VA 2JI5A 4I49A 2OGXB 2BRXA 4JZ8A 3U6UA 2BRIA 2J4JA 3K4YA 3C1NA 2VA1A 1YBDA 2WE4A 4NDOB 3AB2A 3D41A 3S6GA 2CDQA 4JZ9A 2E9YA 3ZZIA 2A1FA 2WE5A 4NDQB 4NDRA 1OH9A 2OGXA 2BNFA 1GSJA 3LL9A 3TVIA 2BMUA 4KZTA 2J4KA 2HMFA 4AB7A 4F6TB 2JJ4A 3D2MA 2RD5A 4OLCA
chains in the Genus database with same CATH superfamily
3K56A 2V5HA 3QURA 3L86A 3ZZGA 3QVHA 2J4LA 2BNEA 4A7WA 3ZZHA 3K4OA 4A7XA 4NDPB 4F6TA 3NWYA 3AAWA 3LL5A 3S6KA 4Q1TA 2R98A 2BTYA 4NDOA 3QUNA 3QVFA 3B8GA 3LKKA 4NDQA 3WWMA 3T7BA 2W21A 2AP9A 4AXSA 1E19A 4USJA 2BNDA 2J0WA 3AB4A 2WXBA 4NDRB 3C20A 3S6HA 2R8VA 3C1MA 2V4YA 1B7BA 3WWNA 3EK6A 3D2PA 1OHAA 2IJ9A 2AKOA 3D40A 2J0XA 3K52A 3QUOA 2J5TA 4NDPA 3KZFA 2JJXA 1Z9DA 1OHBA 3L76A 1GS5A 4JZ7A 2X2WA 3ZZFA 2BUFA 3EK5A 2J5VA 2JI5A 4I49A 2OGXB 2BRXA 4JZ8A 3U6UA 2BRIA 2J4JA 3K4YA 3C1NA 2VA1A 1YBDA 2WE4A 4NDOB 3AB2A 3D41A 3S6GA 2CDQA 4JZ9A 2E9YA 3ZZIA 2A1FA 2WE5A 4NDQB 4NDRA 1OH9A 2OGXA 2BNFA 1GSJA 3LL9A 3TVIA 2BMUA 4KZTA 2J4KA 2HMFA 4AB7A 4F6TB 2JJ4A 3D2MA 2RD5A 4OLCA
chains in the Genus database with same CATH topology
3K56A 2V5HA 3QURA 3L86A 3ZZGA 3QVHA 2J4LA 2BNEA 4A7WA 3ZZHA 3K4OA 4A7XA 4NDPB 4F6TA 3NWYA 3AAWA 3LL5A 3S6KA 4Q1TA 2R98A 2BTYA 4NDOA 3QUNA 3QVFA 3B8GA 3LKKA 4NDQA 3WWMA 3T7BA 2W21A 2AP9A 4AXSA 1E19A 4USJA 2BNDA 2J0WA 3AB4A 2WXBA 4NDRB 3C20A 3S6HA 2R8VA 3C1MA 2V4YA 1B7BA 3WWNA 3EK6A 3D2PA 1OHAA 2IJ9A 2AKOA 3D40A 2J0XA 3K52A 3QUOA 2J5TA 4NDPA 3KZFA 2JJXA 1Z9DA 1OHBA 3L76A 1GS5A 4JZ7A 2X2WA 3ZZFA 2BUFA 3EK5A 2J5VA 2JI5A 4I49A 2OGXB 2BRXA 4JZ8A 3U6UA 2BRIA 2J4JA 3K4YA 3C1NA 2VA1A 1YBDA 2WE4A 4NDOB 3AB2A 3D41A 3S6GA 2CDQA 4JZ9A 2E9YA 3ZZIA 2A1FA 2WE5A 4NDQB 4NDRA 1OH9A 2OGXA 2BNFA 1GSJA 3LL9A 3TVIA 2BMUA 4KZTA 2J4KA 2HMFA 4AB7A 4F6TB 2JJ4A 3D2MA 2RD5A 4OLCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3K56 A;  2V5H A;  3QUR A;  3L86 A;  3ZZG A;  3QVH A;  2J4L A;  2BNE A;  4A7W A;  3ZZH A;  3K4O A;  4A7X A;  4NDP B;  4F6T A;  3NWY A;  3AAW A;  3LL5 A;  3S6K A;  4Q1T A;  2R98 A;  2BTY A;  4NDO A;  3QUN A;  3QVF A;  3B8G A;  3LKK A;  4NDQ A;  3WWM A;  3T7B A;  2W21 A;  2AP9 A;  4AXS A;  1E19 A;  4USJ A;  2BND A;  2J0W A;  3AB4 A;  2WXB A;  4NDR B;  3C20 A;  3S6H A;  2R8V A;  3C1M A;  2V4Y A;  1B7B A;  3WWN A;  3EK6 A;  3D2P A;  1OHA A;  2IJ9 A;  2AKO A;  3D40 A;  2J0X A;  3K52 A;  3QUO A;  2J5T A;  4NDP A;  3KZF A;  2JJX A;  1Z9D A;  1OHB A;  3L76 A;  1GS5 A;  4JZ7 A;  2X2W A;  3ZZF A;  2BUF A;  3EK5 A;  2J5V A;  2JI5 A;  4I49 A;  2OGX B;  2BRX A;  4JZ8 A;  3U6U A;  2BRI A;  2J4J A;  3K4Y A;  3C1N A;  2VA1 A;  1YBD A;  2WE4 A;  4NDO B;  3AB2 A;  3D41 A;  3S6G A;  2CDQ A;  4JZ9 A;  2E9Y A;  3ZZI A;  2A1F A;  2WE5 A;  4NDQ B;  4NDR A;  1OH9 A;  2OGX A;  2BNF A;  1GSJ A;  3LL9 A;  3TVI A;  2BMU A;  4KZT A;  2J4K A;  2HMF A;  4AB7 A;  4F6T B;  2JJ4 A;  3D2M A;  2RD5 A;  4OLC A; 
#chains in the Genus database with same CATH topology
 3K56 A;  2V5H A;  3QUR A;  3L86 A;  3ZZG A;  3QVH A;  2J4L A;  2BNE A;  4A7W A;  3ZZH A;  3K4O A;  4A7X A;  4NDP B;  4F6T A;  3NWY A;  3AAW A;  3LL5 A;  3S6K A;  4Q1T A;  2R98 A;  2BTY A;  4NDO A;  3QUN A;  3QVF A;  3B8G A;  3LKK A;  4NDQ A;  3WWM A;  3T7B A;  2W21 A;  2AP9 A;  4AXS A;  1E19 A;  4USJ A;  2BND A;  2J0W A;  3AB4 A;  2WXB A;  4NDR B;  3C20 A;  3S6H A;  2R8V A;  3C1M A;  2V4Y A;  1B7B A;  3WWN A;  3EK6 A;  3D2P A;  1OHA A;  2IJ9 A;  2AKO A;  3D40 A;  2J0X A;  3K52 A;  3QUO A;  2J5T A;  4NDP A;  3KZF A;  2JJX A;  1Z9D A;  1OHB A;  3L76 A;  1GS5 A;  4JZ7 A;  2X2W A;  3ZZF A;  2BUF A;  3EK5 A;  2J5V A;  2JI5 A;  4I49 A;  2OGX B;  2BRX A;  4JZ8 A;  3U6U A;  2BRI A;  2J4J A;  3K4Y A;  3C1N A;  2VA1 A;  1YBD A;  2WE4 A;  4NDO B;  3AB2 A;  3D41 A;  3S6G A;  2CDQ A;  4JZ9 A;  2E9Y A;  3ZZI A;  2A1F A;  2WE5 A;  4NDQ B;  4NDR A;  1OH9 A;  2OGX A;  2BNF A;  1GSJ A;  3LL9 A;  3TVI A;  2BMU A;  4KZT A;  2J4K A;  2HMF A;  4AB7 A;  4F6T B;  2JJ4 A;  3D2M A;  2RD5 A;  4OLC A; 
#chains in the Genus database with same CATH homology
 3K56 A;  2V5H A;  3QUR A;  3L86 A;  3ZZG A;  3QVH A;  2J4L A;  2BNE A;  4A7W A;  3ZZH A;  3K4O A;  4A7X A;  4NDP B;  4F6T A;  3NWY A;  3AAW A;  3LL5 A;  3S6K A;  4Q1T A;  2R98 A;  2BTY A;  4NDO A;  3QUN A;  3QVF A;  3B8G A;  3LKK A;  4NDQ A;  3WWM A;  3T7B A;  2W21 A;  2AP9 A;  4AXS A;  1E19 A;  4USJ A;  2BND A;  2J0W A;  3AB4 A;  2WXB A;  4NDR B;  3C20 A;  3S6H A;  2R8V A;  3C1M A;  2V4Y A;  1B7B A;  3WWN A;  3EK6 A;  3D2P A;  1OHA A;  2IJ9 A;  2AKO A;  3D40 A;  2J0X A;  3K52 A;  3QUO A;  2J5T A;  4NDP A;  3KZF A;  2JJX A;  1Z9D A;  1OHB A;  3L76 A;  1GS5 A;  4JZ7 A;  2X2W A;  3ZZF A;  2BUF A;  3EK5 A;  2J5V A;  2JI5 A;  4I49 A;  2OGX B;  2BRX A;  4JZ8 A;  3U6U A;  2BRI A;  2J4J A;  3K4Y A;  3C1N A;  2VA1 A;  1YBD A;  2WE4 A;  4NDO B;  3AB2 A;  3D41 A;  3S6G A;  2CDQ A;  4JZ9 A;  2E9Y A;  3ZZI A;  2A1F A;  2WE5 A;  4NDQ B;  4NDR A;  1OH9 A;  2OGX A;  2BNF A;  1GSJ A;  3LL9 A;  3TVI A;  2BMU A;  4KZT A;  2J4K A;  2HMF A;  4AB7 A;  4F6T B;  2JJ4 A;  3D2M A;  2RD5 A;  4OLC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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