4AXSA

Structure of carbamate kinase from mycoplasma penetrans
Total Genus 78
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
307
structure length
291
Chain Sequence
RIVIALGGNALGDNPSQQKELVKIPAAKIAALIQEGHEVIVGHGNGPQVGMIFNAFADAKKANEKTALVPFAEAGGMSQGYIGYHMLTAISNELKKLNIQKDVLYFLTQTIVDANDPAFKNPTKPVGPFYSNPNSVIVKVVASPIPVDFIGIDAIKQNVNNGCVCIVGGGGGIPTIIQDNQYIGVDGVIDKDFALAKIADAVNADIFVVLTAVDYVYVDFNKPTQKALKTVDVKALNNFINQDQFAKGSMLPKIKAAMGFVNGHPNRSAIIADLSKVEDALKGLSGTKIIA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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molecule tags Oxidoreductase
molecule keywords CARBAMATE KINASE
publication title Structural Characterization of the Enzymes Composing the Arginine Deiminase Pathway in Mycoplasma Penetrans.
pubmed doi rcsb
source organism Mycoplasma penetrans
total genus 78
structure length 291
sequence length 307
ec nomenclature
pdb deposition date 2012-06-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 4axsA00
3AAWA 2BNFA 2R98A 3ZZIA 4AXSA 4F6TA 2AKOA 3C1NA 4NDPB 2IJ9A 2R8VA 3AB4A 3WWMA 4I49A 2RD5A 3QUOA 2JJ4A 2OGXB 3K56A 4JZ9A 3S6HA 3WWNA 3ZZHA 2V5HA 3K4OA 3TVIA 4NDOB 3C1MA 3AB2A 3QVFA 4NDPA 4KZTA 3ZZGA 2WE5A 1GS5A 2AP9A 4AB7A 2OGXA 2J4LA 3NWYA 4NDOA 4USJA 3LL5A 2BNDA 3K4YA 2J5VA 1Z9DA 2W21A 2BUFA 3QUNA 1E19A 2BRIA 3QURA 3S6KA 2J4KA 2VA1A 2BRXA 2BMUA 1OHBA 4NDQB 4Q1TA 2BNEA 2WE4A 3ZZFA 1GSJA 4OLCA 3K52A 3L76A 3KZFA 2J5TA 3D40A 4NDQA 2A1FA 2BTYA 3D41A 4JZ7A 2V4YA 2J0WA 3U6UA 2JJXA 4A7WA 4NDRB 1OH9A 1B7BA 3D2PA 2J0XA 3D2MA 3QVHA 2JI5A 4A7XA 3L86A 3LL9A 3EK5A 4JZ8A 2X2WA 3T7BA 4NDRA 2WXBA 2E9YA 3S6GA 2HMFA 2J4JA 3EK6A 1YBDA 3C20A 3B8GA 4F6TB 2CDQA 3LKKA 1OHAA
chains in the Genus database with same CATH superfamily
3AAWA 2BNFA 2R98A 3ZZIA 4AXSA 4F6TA 2AKOA 3C1NA 4NDPB 2IJ9A 2R8VA 3AB4A 3WWMA 4I49A 2RD5A 3QUOA 2JJ4A 2OGXB 3K56A 4JZ9A 3S6HA 3WWNA 3ZZHA 2V5HA 3K4OA 3TVIA 4NDOB 3C1MA 3AB2A 3QVFA 4NDPA 4KZTA 3ZZGA 2WE5A 1GS5A 2AP9A 4AB7A 2OGXA 2J4LA 3NWYA 4NDOA 4USJA 3LL5A 2BNDA 3K4YA 2J5VA 1Z9DA 2W21A 2BUFA 3QUNA 1E19A 2BRIA 3QURA 3S6KA 2J4KA 2VA1A 2BRXA 2BMUA 1OHBA 4NDQB 4Q1TA 2BNEA 2WE4A 3ZZFA 1GSJA 4OLCA 3K52A 3L76A 3KZFA 2J5TA 3D40A 4NDQA 2A1FA 2BTYA 3D41A 4JZ7A 2V4YA 2J0WA 3U6UA 2JJXA 4A7WA 4NDRB 1OH9A 1B7BA 3D2PA 2J0XA 3D2MA 3QVHA 2JI5A 4A7XA 3L86A 3LL9A 3EK5A 4JZ8A 2X2WA 3T7BA 4NDRA 2WXBA 2E9YA 3S6GA 2HMFA 2J4JA 3EK6A 1YBDA 3C20A 3B8GA 4F6TB 2CDQA 3LKKA 1OHAA
chains in the Genus database with same CATH topology
3AAWA 2BNFA 2R98A 3ZZIA 4AXSA 4F6TA 2AKOA 3C1NA 4NDPB 2IJ9A 2R8VA 3AB4A 3WWMA 4I49A 2RD5A 3QUOA 2JJ4A 2OGXB 3K56A 4JZ9A 3S6HA 3WWNA 3ZZHA 2V5HA 3K4OA 3TVIA 4NDOB 3C1MA 3AB2A 3QVFA 4NDPA 4KZTA 3ZZGA 2WE5A 1GS5A 2AP9A 4AB7A 2OGXA 2J4LA 3NWYA 4NDOA 4USJA 3LL5A 2BNDA 3K4YA 2J5VA 1Z9DA 2W21A 2BUFA 3QUNA 1E19A 2BRIA 3QURA 3S6KA 2J4KA 2VA1A 2BRXA 2BMUA 1OHBA 4NDQB 4Q1TA 2BNEA 2WE4A 3ZZFA 1GSJA 4OLCA 3K52A 3L76A 3KZFA 2J5TA 3D40A 4NDQA 2A1FA 2BTYA 3D41A 4JZ7A 2V4YA 2J0WA 3U6UA 2JJXA 4A7WA 4NDRB 1OH9A 1B7BA 3D2PA 2J0XA 3D2MA 3QVHA 2JI5A 4A7XA 3L86A 3LL9A 3EK5A 4JZ8A 2X2WA 3T7BA 4NDRA 2WXBA 2E9YA 3S6GA 2HMFA 2J4JA 3EK6A 1YBDA 3C20A 3B8GA 4F6TB 2CDQA 3LKKA 1OHAA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3AAW A;  2BNF A;  2R98 A;  3ZZI A;  4AXS A;  4F6T A;  2AKO A;  3C1N A;  4NDP B;  2IJ9 A;  2R8V A;  3AB4 A;  3WWM A;  4I49 A;  2RD5 A;  3QUO A;  2JJ4 A;  2OGX B;  3K56 A;  4JZ9 A;  3S6H A;  3WWN A;  3ZZH A;  2V5H A;  3K4O A;  3TVI A;  4NDO B;  3C1M A;  3AB2 A;  3QVF A;  4NDP A;  4KZT A;  3ZZG A;  2WE5 A;  1GS5 A;  2AP9 A;  4AB7 A;  2OGX A;  2J4L A;  3NWY A;  4NDO A;  4USJ A;  3LL5 A;  2BND A;  3K4Y A;  2J5V A;  1Z9D A;  2W21 A;  2BUF A;  3QUN A;  1E19 A;  2BRI A;  3QUR A;  3S6K A;  2J4K A;  2VA1 A;  2BRX A;  2BMU A;  1OHB A;  4NDQ B;  4Q1T A;  2BNE A;  2WE4 A;  3ZZF A;  1GSJ A;  4OLC A;  3K52 A;  3L76 A;  3KZF A;  2J5T A;  3D40 A;  4NDQ A;  2A1F A;  2BTY A;  3D41 A;  4JZ7 A;  2V4Y A;  2J0W A;  3U6U A;  2JJX A;  4A7W A;  4NDR B;  1OH9 A;  1B7B A;  3D2P A;  2J0X A;  3D2M A;  3QVH A;  2JI5 A;  4A7X A;  3L86 A;  3LL9 A;  3EK5 A;  4JZ8 A;  2X2W A;  3T7B A;  4NDR A;  2WXB A;  2E9Y A;  3S6G A;  2HMF A;  2J4J A;  3EK6 A;  1YBD A;  3C20 A;  3B8G A;  4F6T B;  2CDQ A;  3LKK A;  1OHA A; 
#chains in the Genus database with same CATH topology
 3AAW A;  2BNF A;  2R98 A;  3ZZI A;  4AXS A;  4F6T A;  2AKO A;  3C1N A;  4NDP B;  2IJ9 A;  2R8V A;  3AB4 A;  3WWM A;  4I49 A;  2RD5 A;  3QUO A;  2JJ4 A;  2OGX B;  3K56 A;  4JZ9 A;  3S6H A;  3WWN A;  3ZZH A;  2V5H A;  3K4O A;  3TVI A;  4NDO B;  3C1M A;  3AB2 A;  3QVF A;  4NDP A;  4KZT A;  3ZZG A;  2WE5 A;  1GS5 A;  2AP9 A;  4AB7 A;  2OGX A;  2J4L A;  3NWY A;  4NDO A;  4USJ A;  3LL5 A;  2BND A;  3K4Y A;  2J5V A;  1Z9D A;  2W21 A;  2BUF A;  3QUN A;  1E19 A;  2BRI A;  3QUR A;  3S6K A;  2J4K A;  2VA1 A;  2BRX A;  2BMU A;  1OHB A;  4NDQ B;  4Q1T A;  2BNE A;  2WE4 A;  3ZZF A;  1GSJ A;  4OLC A;  3K52 A;  3L76 A;  3KZF A;  2J5T A;  3D40 A;  4NDQ A;  2A1F A;  2BTY A;  3D41 A;  4JZ7 A;  2V4Y A;  2J0W A;  3U6U A;  2JJX A;  4A7W A;  4NDR B;  1OH9 A;  1B7B A;  3D2P A;  2J0X A;  3D2M A;  3QVH A;  2JI5 A;  4A7X A;  3L86 A;  3LL9 A;  3EK5 A;  4JZ8 A;  2X2W A;  3T7B A;  4NDR A;  2WXB A;  2E9Y A;  3S6G A;  2HMF A;  2J4J A;  3EK6 A;  1YBD A;  3C20 A;  3B8G A;  4F6T B;  2CDQ A;  3LKK A;  1OHA A; 
#chains in the Genus database with same CATH homology
 3AAW A;  2BNF A;  2R98 A;  3ZZI A;  4AXS A;  4F6T A;  2AKO A;  3C1N A;  4NDP B;  2IJ9 A;  2R8V A;  3AB4 A;  3WWM A;  4I49 A;  2RD5 A;  3QUO A;  2JJ4 A;  2OGX B;  3K56 A;  4JZ9 A;  3S6H A;  3WWN A;  3ZZH A;  2V5H A;  3K4O A;  3TVI A;  4NDO B;  3C1M A;  3AB2 A;  3QVF A;  4NDP A;  4KZT A;  3ZZG A;  2WE5 A;  1GS5 A;  2AP9 A;  4AB7 A;  2OGX A;  2J4L A;  3NWY A;  4NDO A;  4USJ A;  3LL5 A;  2BND A;  3K4Y A;  2J5V A;  1Z9D A;  2W21 A;  2BUF A;  3QUN A;  1E19 A;  2BRI A;  3QUR A;  3S6K A;  2J4K A;  2VA1 A;  2BRX A;  2BMU A;  1OHB A;  4NDQ B;  4Q1T A;  2BNE A;  2WE4 A;  3ZZF A;  1GSJ A;  4OLC A;  3K52 A;  3L76 A;  3KZF A;  2J5T A;  3D40 A;  4NDQ A;  2A1F A;  2BTY A;  3D41 A;  4JZ7 A;  2V4Y A;  2J0W A;  3U6U A;  2JJX A;  4A7W A;  4NDR B;  1OH9 A;  1B7B A;  3D2P A;  2J0X A;  3D2M A;  3QVH A;  2JI5 A;  4A7X A;  3L86 A;  3LL9 A;  3EK5 A;  4JZ8 A;  2X2W A;  3T7B A;  4NDR A;  2WXB A;  2E9Y A;  3S6G A;  2HMF A;  2J4J A;  3EK6 A;  1YBD A;  3C20 A;  3B8G A;  4F6T B;  2CDQ A;  3LKK A;  1OHA A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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