4AXSA

Structure of carbamate kinase from mycoplasma penetrans
Total Genus 78
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
307
structure length
291
Chain Sequence
b'RIVIALGGNALGDNPSQQKELVKIPAAKIAALIQEGHEVIVGHGNGPQVGMIFNAFADAKKANEKTALVPFAEAGGMSQGYIGYHMLTAISNELKKLNIQKDVLYFLTQTIVDANDPAFKNPTKPVGPFYSNPNSVIVKVVASPIPVDFIGIDAIKQNVNNGCVCIVGGGGGIPTIIQDNQYIGVDGVIDKDFALAKIADAVNADIFVVLTAVDYVYVDFNKPTQKALKTVDVKALNNFINQDQFAKGSMLPKIKAAMGFVNGHPNRSAIIADLSKVEDALKGLSGTKIIA'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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publication title Structural Characterization of the Enzymes Composing the Arginine Deiminase Pathway in Mycoplasma Penetrans.
pubmed doi rcsb
molecule keywords CARBAMATE KINASE
source organism Mycoplasma penetrans
molecule tags Oxidoreductase
total genus 78
structure length 291
sequence length 307
ec nomenclature
pdb deposition date 2012-06-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 4axsA00
4USJA 4JZ7A 2CDQA 4Q1TA 3WWMA 4F6TB 4AB7A 4AXSA 3K56A 2J5TA 2JI5A 3ZZGA 3LL9A 1OHAA 2BUFA 2A1FA 3D2PA 3K4OA 2WE4A 2BRXA 3QUOA 4NDOA 3EK5A 2BNDA 3S6HA 4I49A 3K52A 2J4JA 3K4YA 2V5HA 4NDRA 2JJXA 2J0XA 3D40A 3C1NA 3EK6A 3ZZIA 3LKKA 3S6KA 3QURA 4JZ8A 4NDQA 4NDPA 2J5VA 2OGXB 2BNEA 2E9YA 2VA1A 1OHBA 2R98A 1GSJA 2IJ9A 4NDOB 3B8GA 3QVHA 3WWNA 3AB4A 1OH9A 4A7WA 3AB2A 3LL5A 4OLCA 2AKOA 4A7XA 3L76A 4KZTA 2WXBA 3T7BA 2WE5A 2X2WA 3S6GA 3QVFA 3KZFA 3ZZFA 3NWYA 3U6UA 2R8VA 3C1MA 4F6TA 3L86A 2BNFA 2J0WA 3AAWA 2RD5A 2BMUA 2V4YA 2HMFA 4JZ9A 3QUNA 2OGXA 3D2MA 2AP9A 1E19A 2BRIA 1YBDA 1Z9DA 1GS5A 2W21A 4NDRB 1B7BA 3D41A 2JJ4A 3TVIA 2J4KA 3C20A 4NDQB 4NDPB 2J4LA 2BTYA 3ZZHA
chains in the Genus database with same CATH superfamily
4USJA 4JZ7A 2CDQA 4Q1TA 3WWMA 4F6TB 4AB7A 4AXSA 3K56A 2J5TA 2JI5A 3ZZGA 3LL9A 1OHAA 2BUFA 2A1FA 3D2PA 3K4OA 2WE4A 2BRXA 3QUOA 4NDOA 3EK5A 2BNDA 3S6HA 4I49A 3K52A 2J4JA 3K4YA 2V5HA 4NDRA 2JJXA 2J0XA 3D40A 3C1NA 3EK6A 3ZZIA 3LKKA 3S6KA 3QURA 4JZ8A 4NDQA 4NDPA 2J5VA 2OGXB 2BNEA 2E9YA 2VA1A 1OHBA 2R98A 1GSJA 2IJ9A 4NDOB 3B8GA 3QVHA 3WWNA 3AB4A 1OH9A 4A7WA 3AB2A 3LL5A 4OLCA 2AKOA 4A7XA 3L76A 4KZTA 2WXBA 3T7BA 2WE5A 2X2WA 3S6GA 3QVFA 3KZFA 3ZZFA 3NWYA 3U6UA 2R8VA 3C1MA 4F6TA 3L86A 2BNFA 2J0WA 3AAWA 2RD5A 2BMUA 2V4YA 2HMFA 4JZ9A 3QUNA 2OGXA 3D2MA 2AP9A 1E19A 2BRIA 1YBDA 1Z9DA 1GS5A 2W21A 4NDRB 1B7BA 3D41A 2JJ4A 3TVIA 2J4KA 3C20A 4NDQB 4NDPB 2J4LA 2BTYA 3ZZHA
chains in the Genus database with same CATH topology
4USJA 4JZ7A 2CDQA 4Q1TA 3WWMA 4F6TB 4AB7A 4AXSA 3K56A 2J5TA 2JI5A 3ZZGA 3LL9A 1OHAA 2BUFA 2A1FA 3D2PA 3K4OA 2WE4A 2BRXA 3QUOA 4NDOA 3EK5A 2BNDA 3S6HA 4I49A 3K52A 2J4JA 3K4YA 2V5HA 4NDRA 2JJXA 2J0XA 3D40A 3C1NA 3EK6A 3ZZIA 3LKKA 3S6KA 3QURA 4JZ8A 4NDQA 4NDPA 2J5VA 2OGXB 2BNEA 2E9YA 2VA1A 1OHBA 2R98A 1GSJA 2IJ9A 4NDOB 3B8GA 3QVHA 3WWNA 3AB4A 1OH9A 4A7WA 3AB2A 3LL5A 4OLCA 2AKOA 4A7XA 3L76A 4KZTA 2WXBA 3T7BA 2WE5A 2X2WA 3S6GA 3QVFA 3KZFA 3ZZFA 3NWYA 3U6UA 2R8VA 3C1MA 4F6TA 3L86A 2BNFA 2J0WA 3AAWA 2RD5A 2BMUA 2V4YA 2HMFA 4JZ9A 3QUNA 2OGXA 3D2MA 2AP9A 1E19A 2BRIA 1YBDA 1Z9DA 1GS5A 2W21A 4NDRB 1B7BA 3D41A 2JJ4A 3TVIA 2J4KA 3C20A 4NDQB 4NDPB 2J4LA 2BTYA 3ZZHA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 4USJ A;  4JZ7 A;  2CDQ A;  4Q1T A;  3WWM A;  4F6T B;  4AB7 A;  4AXS A;  3K56 A;  2J5T A;  2JI5 A;  3ZZG A;  3LL9 A;  1OHA A;  2BUF A;  2A1F A;  3D2P A;  3K4O A;  2WE4 A;  2BRX A;  3QUO A;  4NDO A;  3EK5 A;  2BND A;  3S6H A;  4I49 A;  3K52 A;  2J4J A;  3K4Y A;  2V5H A;  4NDR A;  2JJX A;  2J0X A;  3D40 A;  3C1N A;  3EK6 A;  3ZZI A;  3LKK A;  3S6K A;  3QUR A;  4JZ8 A;  4NDQ A;  4NDP A;  2J5V A;  2OGX B;  2BNE A;  2E9Y A;  2VA1 A;  1OHB A;  2R98 A;  1GSJ A;  2IJ9 A;  4NDO B;  3B8G A;  3QVH A;  3WWN A;  3AB4 A;  1OH9 A;  4A7W A;  3AB2 A;  3LL5 A;  4OLC A;  2AKO A;  4A7X A;  3L76 A;  4KZT A;  2WXB A;  3T7B A;  2WE5 A;  2X2W A;  3S6G A;  3QVF A;  3KZF A;  3ZZF A;  3NWY A;  3U6U A;  2R8V A;  3C1M A;  4F6T A;  3L86 A;  2BNF A;  2J0W A;  3AAW A;  2RD5 A;  2BMU A;  2V4Y A;  2HMF A;  4JZ9 A;  3QUN A;  2OGX A;  3D2M A;  2AP9 A;  1E19 A;  2BRI A;  1YBD A;  1Z9D A;  1GS5 A;  2W21 A;  4NDR B;  1B7B A;  3D41 A;  2JJ4 A;  3TVI A;  2J4K A;  3C20 A;  4NDQ B;  4NDP B;  2J4L A;  2BTY A;  3ZZH A; 
#chains in the Genus database with same CATH topology
 4USJ A;  4JZ7 A;  2CDQ A;  4Q1T A;  3WWM A;  4F6T B;  4AB7 A;  4AXS A;  3K56 A;  2J5T A;  2JI5 A;  3ZZG A;  3LL9 A;  1OHA A;  2BUF A;  2A1F A;  3D2P A;  3K4O A;  2WE4 A;  2BRX A;  3QUO A;  4NDO A;  3EK5 A;  2BND A;  3S6H A;  4I49 A;  3K52 A;  2J4J A;  3K4Y A;  2V5H A;  4NDR A;  2JJX A;  2J0X A;  3D40 A;  3C1N A;  3EK6 A;  3ZZI A;  3LKK A;  3S6K A;  3QUR A;  4JZ8 A;  4NDQ A;  4NDP A;  2J5V A;  2OGX B;  2BNE A;  2E9Y A;  2VA1 A;  1OHB A;  2R98 A;  1GSJ A;  2IJ9 A;  4NDO B;  3B8G A;  3QVH A;  3WWN A;  3AB4 A;  1OH9 A;  4A7W A;  3AB2 A;  3LL5 A;  4OLC A;  2AKO A;  4A7X A;  3L76 A;  4KZT A;  2WXB A;  3T7B A;  2WE5 A;  2X2W A;  3S6G A;  3QVF A;  3KZF A;  3ZZF A;  3NWY A;  3U6U A;  2R8V A;  3C1M A;  4F6T A;  3L86 A;  2BNF A;  2J0W A;  3AAW A;  2RD5 A;  2BMU A;  2V4Y A;  2HMF A;  4JZ9 A;  3QUN A;  2OGX A;  3D2M A;  2AP9 A;  1E19 A;  2BRI A;  1YBD A;  1Z9D A;  1GS5 A;  2W21 A;  4NDR B;  1B7B A;  3D41 A;  2JJ4 A;  3TVI A;  2J4K A;  3C20 A;  4NDQ B;  4NDP B;  2J4L A;  2BTY A;  3ZZH A; 
#chains in the Genus database with same CATH homology
 4USJ A;  4JZ7 A;  2CDQ A;  4Q1T A;  3WWM A;  4F6T B;  4AB7 A;  4AXS A;  3K56 A;  2J5T A;  2JI5 A;  3ZZG A;  3LL9 A;  1OHA A;  2BUF A;  2A1F A;  3D2P A;  3K4O A;  2WE4 A;  2BRX A;  3QUO A;  4NDO A;  3EK5 A;  2BND A;  3S6H A;  4I49 A;  3K52 A;  2J4J A;  3K4Y A;  2V5H A;  4NDR A;  2JJX A;  2J0X A;  3D40 A;  3C1N A;  3EK6 A;  3ZZI A;  3LKK A;  3S6K A;  3QUR A;  4JZ8 A;  4NDQ A;  4NDP A;  2J5V A;  2OGX B;  2BNE A;  2E9Y A;  2VA1 A;  1OHB A;  2R98 A;  1GSJ A;  2IJ9 A;  4NDO B;  3B8G A;  3QVH A;  3WWN A;  3AB4 A;  1OH9 A;  4A7W A;  3AB2 A;  3LL5 A;  4OLC A;  2AKO A;  4A7X A;  3L76 A;  4KZT A;  2WXB A;  3T7B A;  2WE5 A;  2X2W A;  3S6G A;  3QVF A;  3KZF A;  3ZZF A;  3NWY A;  3U6U A;  2R8V A;  3C1M A;  4F6T A;  3L86 A;  2BNF A;  2J0W A;  3AAW A;  2RD5 A;  2BMU A;  2V4Y A;  2HMF A;  4JZ9 A;  3QUN A;  2OGX A;  3D2M A;  2AP9 A;  1E19 A;  2BRI A;  1YBD A;  1Z9D A;  1GS5 A;  2W21 A;  4NDR B;  1B7B A;  3D41 A;  2JJ4 A;  3TVI A;  2J4K A;  3C20 A;  4NDQ B;  4NDP B;  2J4L A;  2BTY A;  3ZZH A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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