4AXSA

Structure of carbamate kinase from mycoplasma penetrans
Total Genus 78
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
307
structure length
291
Chain Sequence
RIVIALGGNALGDNPSQQKELVKIPAAKIAALIQEGHEVIVGHGNGPQVGMIFNAFADAKKANEKTALVPFAEAGGMSQGYIGYHMLTAISNELKKLNIQKDVLYFLTQTIVDANDPAFKNPTKPVGPFYSNPNSVIVKVVASPIPVDFIGIDAIKQNVNNGCVCIVGGGGGIPTIIQDNQYIGVDGVIDKDFALAKIADAVNADIFVVLTAVDYVYVDFNKPTQKALKTVDVKALNNFINQDQFAKGSMLPKIKAAMGFVNGHPNRSAIIADLSKVEDALKGLSGTKIIA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords CARBAMATE KINASE
publication title Structural Characterization of the Enzymes Composing the Arginine Deiminase Pathway in Mycoplasma Penetrans.
pubmed doi rcsb
source organism Mycoplasma penetrans
total genus 78
structure length 291
sequence length 307
ec nomenclature
pdb deposition date 2012-06-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 4axsA00
3D40A 3C1MA 2J5TA 3LKKA 3K52A 4A7XA 2W21A 4F6TA 2WE5A 2JJ4A 2BMUA 2JI5A 4NDRB 2WXBA 4NDPA 4F6TB 3AB2A 4NDQA 4NDOA 2R98A 2AKOA 2V5HA 4KZTA 3QUOA 1OH9A 2J0WA 2R8VA 2BNEA 2V4YA 3KZFA 4Q1TA 3EK6A 3K4YA 2J5VA 2J4JA 1OHAA 2WE4A 1OHBA 1Z9DA 3QUNA 3ZZHA 1B7BA 3LL9A 2OGXA 3B8GA 1GS5A 4USJA 3D2PA 3TVIA 3QVFA 4AB7A 2BTYA 2VA1A 2J4KA 4OLCA 3K56A 2RD5A 4NDPB 2BRXA 4I49A 2JJXA 3EK5A 4JZ9A 3D41A 2X2WA 4NDQB 2BNFA 4AXSA 3WWNA 4NDOB 2BRIA 2J0XA 3S6HA 3T7BA 1E19A 2J4LA 3AAWA 3U6UA 3D2MA 3K4OA 1YBDA 3C20A 3C1NA 3AB4A 3QURA 3LL5A 2OGXB 4NDRA 3S6GA 2AP9A 3ZZFA 2BNDA 3WWMA 2IJ9A 3L86A 2HMFA 3QVHA 3ZZGA 2E9YA 2CDQA 2A1FA 3L76A 4JZ8A 3S6KA 1GSJA 2BUFA 3NWYA 4JZ7A 4A7WA 3ZZIA
chains in the Genus database with same CATH superfamily
3D40A 3C1MA 2J5TA 3LKKA 3K52A 4A7XA 2W21A 4F6TA 2WE5A 2JJ4A 2BMUA 2JI5A 4NDRB 2WXBA 4NDPA 4F6TB 3AB2A 4NDQA 4NDOA 2R98A 2AKOA 2V5HA 4KZTA 3QUOA 1OH9A 2J0WA 2R8VA 2BNEA 2V4YA 3KZFA 4Q1TA 3EK6A 3K4YA 2J5VA 2J4JA 1OHAA 2WE4A 1OHBA 1Z9DA 3QUNA 3ZZHA 1B7BA 3LL9A 2OGXA 3B8GA 1GS5A 4USJA 3D2PA 3TVIA 3QVFA 4AB7A 2BTYA 2VA1A 2J4KA 4OLCA 3K56A 2RD5A 4NDPB 2BRXA 4I49A 2JJXA 3EK5A 4JZ9A 3D41A 2X2WA 4NDQB 2BNFA 4AXSA 3WWNA 4NDOB 2BRIA 2J0XA 3S6HA 3T7BA 1E19A 2J4LA 3AAWA 3U6UA 3D2MA 3K4OA 1YBDA 3C20A 3C1NA 3AB4A 3QURA 3LL5A 2OGXB 4NDRA 3S6GA 2AP9A 3ZZFA 2BNDA 3WWMA 2IJ9A 3L86A 2HMFA 3QVHA 3ZZGA 2E9YA 2CDQA 2A1FA 3L76A 4JZ8A 3S6KA 1GSJA 2BUFA 3NWYA 4JZ7A 4A7WA 3ZZIA
chains in the Genus database with same CATH topology
3D40A 3C1MA 2J5TA 3LKKA 3K52A 4A7XA 2W21A 4F6TA 2WE5A 2JJ4A 2BMUA 2JI5A 4NDRB 2WXBA 4NDPA 4F6TB 3AB2A 4NDQA 4NDOA 2R98A 2AKOA 2V5HA 4KZTA 3QUOA 1OH9A 2J0WA 2R8VA 2BNEA 2V4YA 3KZFA 4Q1TA 3EK6A 3K4YA 2J5VA 2J4JA 1OHAA 2WE4A 1OHBA 1Z9DA 3QUNA 3ZZHA 1B7BA 3LL9A 2OGXA 3B8GA 1GS5A 4USJA 3D2PA 3TVIA 3QVFA 4AB7A 2BTYA 2VA1A 2J4KA 4OLCA 3K56A 2RD5A 4NDPB 2BRXA 4I49A 2JJXA 3EK5A 4JZ9A 3D41A 2X2WA 4NDQB 2BNFA 4AXSA 3WWNA 4NDOB 2BRIA 2J0XA 3S6HA 3T7BA 1E19A 2J4LA 3AAWA 3U6UA 3D2MA 3K4OA 1YBDA 3C20A 3C1NA 3AB4A 3QURA 3LL5A 2OGXB 4NDRA 3S6GA 2AP9A 3ZZFA 2BNDA 3WWMA 2IJ9A 3L86A 2HMFA 3QVHA 3ZZGA 2E9YA 2CDQA 2A1FA 3L76A 4JZ8A 3S6KA 1GSJA 2BUFA 3NWYA 4JZ7A 4A7WA 3ZZIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3D40 A;  3C1M A;  2J5T A;  3LKK A;  3K52 A;  4A7X A;  2W21 A;  4F6T A;  2WE5 A;  2JJ4 A;  2BMU A;  2JI5 A;  4NDR B;  2WXB A;  4NDP A;  4F6T B;  3AB2 A;  4NDQ A;  4NDO A;  2R98 A;  2AKO A;  2V5H A;  4KZT A;  3QUO A;  1OH9 A;  2J0W A;  2R8V A;  2BNE A;  2V4Y A;  3KZF A;  4Q1T A;  3EK6 A;  3K4Y A;  2J5V A;  2J4J A;  1OHA A;  2WE4 A;  1OHB A;  1Z9D A;  3QUN A;  3ZZH A;  1B7B A;  3LL9 A;  2OGX A;  3B8G A;  1GS5 A;  4USJ A;  3D2P A;  3TVI A;  3QVF A;  4AB7 A;  2BTY A;  2VA1 A;  2J4K A;  4OLC A;  3K56 A;  2RD5 A;  4NDP B;  2BRX A;  4I49 A;  2JJX A;  3EK5 A;  4JZ9 A;  3D41 A;  2X2W A;  4NDQ B;  2BNF A;  4AXS A;  3WWN A;  4NDO B;  2BRI A;  2J0X A;  3S6H A;  3T7B A;  1E19 A;  2J4L A;  3AAW A;  3U6U A;  3D2M A;  3K4O A;  1YBD A;  3C20 A;  3C1N A;  3AB4 A;  3QUR A;  3LL5 A;  2OGX B;  4NDR A;  3S6G A;  2AP9 A;  3ZZF A;  2BND A;  3WWM A;  2IJ9 A;  3L86 A;  2HMF A;  3QVH A;  3ZZG A;  2E9Y A;  2CDQ A;  2A1F A;  3L76 A;  4JZ8 A;  3S6K A;  1GSJ A;  2BUF A;  3NWY A;  4JZ7 A;  4A7W A;  3ZZI A; 
#chains in the Genus database with same CATH topology
 3D40 A;  3C1M A;  2J5T A;  3LKK A;  3K52 A;  4A7X A;  2W21 A;  4F6T A;  2WE5 A;  2JJ4 A;  2BMU A;  2JI5 A;  4NDR B;  2WXB A;  4NDP A;  4F6T B;  3AB2 A;  4NDQ A;  4NDO A;  2R98 A;  2AKO A;  2V5H A;  4KZT A;  3QUO A;  1OH9 A;  2J0W A;  2R8V A;  2BNE A;  2V4Y A;  3KZF A;  4Q1T A;  3EK6 A;  3K4Y A;  2J5V A;  2J4J A;  1OHA A;  2WE4 A;  1OHB A;  1Z9D A;  3QUN A;  3ZZH A;  1B7B A;  3LL9 A;  2OGX A;  3B8G A;  1GS5 A;  4USJ A;  3D2P A;  3TVI A;  3QVF A;  4AB7 A;  2BTY A;  2VA1 A;  2J4K A;  4OLC A;  3K56 A;  2RD5 A;  4NDP B;  2BRX A;  4I49 A;  2JJX A;  3EK5 A;  4JZ9 A;  3D41 A;  2X2W A;  4NDQ B;  2BNF A;  4AXS A;  3WWN A;  4NDO B;  2BRI A;  2J0X A;  3S6H A;  3T7B A;  1E19 A;  2J4L A;  3AAW A;  3U6U A;  3D2M A;  3K4O A;  1YBD A;  3C20 A;  3C1N A;  3AB4 A;  3QUR A;  3LL5 A;  2OGX B;  4NDR A;  3S6G A;  2AP9 A;  3ZZF A;  2BND A;  3WWM A;  2IJ9 A;  3L86 A;  2HMF A;  3QVH A;  3ZZG A;  2E9Y A;  2CDQ A;  2A1F A;  3L76 A;  4JZ8 A;  3S6K A;  1GSJ A;  2BUF A;  3NWY A;  4JZ7 A;  4A7W A;  3ZZI A; 
#chains in the Genus database with same CATH homology
 3D40 A;  3C1M A;  2J5T A;  3LKK A;  3K52 A;  4A7X A;  2W21 A;  4F6T A;  2WE5 A;  2JJ4 A;  2BMU A;  2JI5 A;  4NDR B;  2WXB A;  4NDP A;  4F6T B;  3AB2 A;  4NDQ A;  4NDO A;  2R98 A;  2AKO A;  2V5H A;  4KZT A;  3QUO A;  1OH9 A;  2J0W A;  2R8V A;  2BNE A;  2V4Y A;  3KZF A;  4Q1T A;  3EK6 A;  3K4Y A;  2J5V A;  2J4J A;  1OHA A;  2WE4 A;  1OHB A;  1Z9D A;  3QUN A;  3ZZH A;  1B7B A;  3LL9 A;  2OGX A;  3B8G A;  1GS5 A;  4USJ A;  3D2P A;  3TVI A;  3QVF A;  4AB7 A;  2BTY A;  2VA1 A;  2J4K A;  4OLC A;  3K56 A;  2RD5 A;  4NDP B;  2BRX A;  4I49 A;  2JJX A;  3EK5 A;  4JZ9 A;  3D41 A;  2X2W A;  4NDQ B;  2BNF A;  4AXS A;  3WWN A;  4NDO B;  2BRI A;  2J0X A;  3S6H A;  3T7B A;  1E19 A;  2J4L A;  3AAW A;  3U6U A;  3D2M A;  3K4O A;  1YBD A;  3C20 A;  3C1N A;  3AB4 A;  3QUR A;  3LL5 A;  2OGX B;  4NDR A;  3S6G A;  2AP9 A;  3ZZF A;  2BND A;  3WWM A;  2IJ9 A;  3L86 A;  2HMF A;  3QVH A;  3ZZG A;  2E9Y A;  2CDQ A;  2A1F A;  3L76 A;  4JZ8 A;  3S6K A;  1GSJ A;  2BUF A;  3NWY A;  4JZ7 A;  4A7W A;  3ZZI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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