4AXSA

Structure of carbamate kinase from mycoplasma penetrans
Total Genus 78
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
307
structure length
291
Chain Sequence
RIVIALGGNALGDNPSQQKELVKIPAAKIAALIQEGHEVIVGHGNGPQVGMIFNAFADAKKANEKTALVPFAEAGGMSQGYIGYHMLTAISNELKKLNIQKDVLYFLTQTIVDANDPAFKNPTKPVGPFYSNPNSVIVKVVASPIPVDFIGIDAIKQNVNNGCVCIVGGGGGIPTIIQDNQYIGVDGVIDKDFALAKIADAVNADIFVVLTAVDYVYVDFNKPTQKALKTVDVKALNNFINQDQFAKGSMLPKIKAAMGFVNGHPNRSAIIADLSKVEDALKGLSGTKIIA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Structural Characterization of the Enzymes Composing the Arginine Deiminase Pathway in Mycoplasma Penetrans.
pubmed doi rcsb
source organism Mycoplasma penetrans
molecule tags Oxidoreductase
molecule keywords CARBAMATE KINASE
total genus 78
structure length 291
sequence length 307
ec nomenclature
pdb deposition date 2012-06-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 4axsA00
4NDRB 3D41A 3D2PA 3EK5A 3S6KA 2BUFA 3C20A 2JJXA 3ZZGA 2BRXA 4JZ9A 2BNEA 2V5HA 2BNFA 2X2WA 2AP9A 3QVFA 4OLCA 4NDOA 2J5TA 2JI5A 3ZZFA 3LL9A 3ZZIA 3B8GA 2BRIA 2J0XA 3EK6A 2VA1A 2HMFA 2JJ4A 2OGXB 3QURA 2W21A 4NDOB 4NDQA 3WWMA 3K4YA 3K56A 3D40A 4NDRA 4F6TA 4NDQB 4NDPB 3QUNA 2A1FA 3AAWA 4USJA 2J4LA 4A7WA 2E9YA 1OHAA 2J5VA 3C1NA 4Q1TA 2CDQA 1GS5A 2RD5A 2WXBA 2WE5A 3K4OA 2V4YA 3C1MA 3AB2A 4JZ7A 2OGXA 3ZZHA 3QVHA 3L86A 1OHBA 2J0WA 1E19A 4KZTA 2AKOA 1Z9DA 3KZFA 3L76A 4AXSA 3K52A 3LL5A 4F6TB 4I49A 3AB4A 4NDPA 3QUOA 2IJ9A 2BTYA 1GSJA 2BMUA 3WWNA 3NWYA 2R8VA 2WE4A 3S6GA 1B7BA 4AB7A 1OH9A 4A7XA 4JZ8A 3T7BA 2R98A 2BNDA 1YBDA 3D2MA 3S6HA 2J4JA 3TVIA 2J4KA 3U6UA 3LKKA
chains in the Genus database with same CATH superfamily
4NDRB 3D41A 3D2PA 3EK5A 3S6KA 2BUFA 3C20A 2JJXA 3ZZGA 2BRXA 4JZ9A 2BNEA 2V5HA 2BNFA 2X2WA 2AP9A 3QVFA 4OLCA 4NDOA 2J5TA 2JI5A 3ZZFA 3LL9A 3ZZIA 3B8GA 2BRIA 2J0XA 3EK6A 2VA1A 2HMFA 2JJ4A 2OGXB 3QURA 2W21A 4NDOB 4NDQA 3WWMA 3K4YA 3K56A 3D40A 4NDRA 4F6TA 4NDQB 4NDPB 3QUNA 2A1FA 3AAWA 4USJA 2J4LA 4A7WA 2E9YA 1OHAA 2J5VA 3C1NA 4Q1TA 2CDQA 1GS5A 2RD5A 2WXBA 2WE5A 3K4OA 2V4YA 3C1MA 3AB2A 4JZ7A 2OGXA 3ZZHA 3QVHA 3L86A 1OHBA 2J0WA 1E19A 4KZTA 2AKOA 1Z9DA 3KZFA 3L76A 4AXSA 3K52A 3LL5A 4F6TB 4I49A 3AB4A 4NDPA 3QUOA 2IJ9A 2BTYA 1GSJA 2BMUA 3WWNA 3NWYA 2R8VA 2WE4A 3S6GA 1B7BA 4AB7A 1OH9A 4A7XA 4JZ8A 3T7BA 2R98A 2BNDA 1YBDA 3D2MA 3S6HA 2J4JA 3TVIA 2J4KA 3U6UA 3LKKA
chains in the Genus database with same CATH topology
4NDRB 3D41A 3D2PA 3EK5A 3S6KA 2BUFA 3C20A 2JJXA 3ZZGA 2BRXA 4JZ9A 2BNEA 2V5HA 2BNFA 2X2WA 2AP9A 3QVFA 4OLCA 4NDOA 2J5TA 2JI5A 3ZZFA 3LL9A 3ZZIA 3B8GA 2BRIA 2J0XA 3EK6A 2VA1A 2HMFA 2JJ4A 2OGXB 3QURA 2W21A 4NDOB 4NDQA 3WWMA 3K4YA 3K56A 3D40A 4NDRA 4F6TA 4NDQB 4NDPB 3QUNA 2A1FA 3AAWA 4USJA 2J4LA 4A7WA 2E9YA 1OHAA 2J5VA 3C1NA 4Q1TA 2CDQA 1GS5A 2RD5A 2WXBA 2WE5A 3K4OA 2V4YA 3C1MA 3AB2A 4JZ7A 2OGXA 3ZZHA 3QVHA 3L86A 1OHBA 2J0WA 1E19A 4KZTA 2AKOA 1Z9DA 3KZFA 3L76A 4AXSA 3K52A 3LL5A 4F6TB 4I49A 3AB4A 4NDPA 3QUOA 2IJ9A 2BTYA 1GSJA 2BMUA 3WWNA 3NWYA 2R8VA 2WE4A 3S6GA 1B7BA 4AB7A 1OH9A 4A7XA 4JZ8A 3T7BA 2R98A 2BNDA 1YBDA 3D2MA 3S6HA 2J4JA 3TVIA 2J4KA 3U6UA 3LKKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4NDR B;  3D41 A;  3D2P A;  3EK5 A;  3S6K A;  2BUF A;  3C20 A;  2JJX A;  3ZZG A;  2BRX A;  4JZ9 A;  2BNE A;  2V5H A;  2BNF A;  2X2W A;  2AP9 A;  3QVF A;  4OLC A;  4NDO A;  2J5T A;  2JI5 A;  3ZZF A;  3LL9 A;  3ZZI A;  3B8G A;  2BRI A;  2J0X A;  3EK6 A;  2VA1 A;  2HMF A;  2JJ4 A;  2OGX B;  3QUR A;  2W21 A;  4NDO B;  4NDQ A;  3WWM A;  3K4Y A;  3K56 A;  3D40 A;  4NDR A;  4F6T A;  4NDQ B;  4NDP B;  3QUN A;  2A1F A;  3AAW A;  4USJ A;  2J4L A;  4A7W A;  2E9Y A;  1OHA A;  2J5V A;  3C1N A;  4Q1T A;  2CDQ A;  1GS5 A;  2RD5 A;  2WXB A;  2WE5 A;  3K4O A;  2V4Y A;  3C1M A;  3AB2 A;  4JZ7 A;  2OGX A;  3ZZH A;  3QVH A;  3L86 A;  1OHB A;  2J0W A;  1E19 A;  4KZT A;  2AKO A;  1Z9D A;  3KZF A;  3L76 A;  4AXS A;  3K52 A;  3LL5 A;  4F6T B;  4I49 A;  3AB4 A;  4NDP A;  3QUO A;  2IJ9 A;  2BTY A;  1GSJ A;  2BMU A;  3WWN A;  3NWY A;  2R8V A;  2WE4 A;  3S6G A;  1B7B A;  4AB7 A;  1OH9 A;  4A7X A;  4JZ8 A;  3T7B A;  2R98 A;  2BND A;  1YBD A;  3D2M A;  3S6H A;  2J4J A;  3TVI A;  2J4K A;  3U6U A;  3LKK A; 
#chains in the Genus database with same CATH topology
 4NDR B;  3D41 A;  3D2P A;  3EK5 A;  3S6K A;  2BUF A;  3C20 A;  2JJX A;  3ZZG A;  2BRX A;  4JZ9 A;  2BNE A;  2V5H A;  2BNF A;  2X2W A;  2AP9 A;  3QVF A;  4OLC A;  4NDO A;  2J5T A;  2JI5 A;  3ZZF A;  3LL9 A;  3ZZI A;  3B8G A;  2BRI A;  2J0X A;  3EK6 A;  2VA1 A;  2HMF A;  2JJ4 A;  2OGX B;  3QUR A;  2W21 A;  4NDO B;  4NDQ A;  3WWM A;  3K4Y A;  3K56 A;  3D40 A;  4NDR A;  4F6T A;  4NDQ B;  4NDP B;  3QUN A;  2A1F A;  3AAW A;  4USJ A;  2J4L A;  4A7W A;  2E9Y A;  1OHA A;  2J5V A;  3C1N A;  4Q1T A;  2CDQ A;  1GS5 A;  2RD5 A;  2WXB A;  2WE5 A;  3K4O A;  2V4Y A;  3C1M A;  3AB2 A;  4JZ7 A;  2OGX A;  3ZZH A;  3QVH A;  3L86 A;  1OHB A;  2J0W A;  1E19 A;  4KZT A;  2AKO A;  1Z9D A;  3KZF A;  3L76 A;  4AXS A;  3K52 A;  3LL5 A;  4F6T B;  4I49 A;  3AB4 A;  4NDP A;  3QUO A;  2IJ9 A;  2BTY A;  1GSJ A;  2BMU A;  3WWN A;  3NWY A;  2R8V A;  2WE4 A;  3S6G A;  1B7B A;  4AB7 A;  1OH9 A;  4A7X A;  4JZ8 A;  3T7B A;  2R98 A;  2BND A;  1YBD A;  3D2M A;  3S6H A;  2J4J A;  3TVI A;  2J4K A;  3U6U A;  3LKK A; 
#chains in the Genus database with same CATH homology
 4NDR B;  3D41 A;  3D2P A;  3EK5 A;  3S6K A;  2BUF A;  3C20 A;  2JJX A;  3ZZG A;  2BRX A;  4JZ9 A;  2BNE A;  2V5H A;  2BNF A;  2X2W A;  2AP9 A;  3QVF A;  4OLC A;  4NDO A;  2J5T A;  2JI5 A;  3ZZF A;  3LL9 A;  3ZZI A;  3B8G A;  2BRI A;  2J0X A;  3EK6 A;  2VA1 A;  2HMF A;  2JJ4 A;  2OGX B;  3QUR A;  2W21 A;  4NDO B;  4NDQ A;  3WWM A;  3K4Y A;  3K56 A;  3D40 A;  4NDR A;  4F6T A;  4NDQ B;  4NDP B;  3QUN A;  2A1F A;  3AAW A;  4USJ A;  2J4L A;  4A7W A;  2E9Y A;  1OHA A;  2J5V A;  3C1N A;  4Q1T A;  2CDQ A;  1GS5 A;  2RD5 A;  2WXB A;  2WE5 A;  3K4O A;  2V4Y A;  3C1M A;  3AB2 A;  4JZ7 A;  2OGX A;  3ZZH A;  3QVH A;  3L86 A;  1OHB A;  2J0W A;  1E19 A;  4KZT A;  2AKO A;  1Z9D A;  3KZF A;  3L76 A;  4AXS A;  3K52 A;  3LL5 A;  4F6T B;  4I49 A;  3AB4 A;  4NDP A;  3QUO A;  2IJ9 A;  2BTY A;  1GSJ A;  2BMU A;  3WWN A;  3NWY A;  2R8V A;  2WE4 A;  3S6G A;  1B7B A;  4AB7 A;  1OH9 A;  4A7X A;  4JZ8 A;  3T7B A;  2R98 A;  2BND A;  1YBD A;  3D2M A;  3S6H A;  2J4J A;  3TVI A;  2J4K A;  3U6U A;  3LKK A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...