2J4KA

Crystal structure of uridylate kinase from sulfolobus solfataricus in complex with ump to 2.2 angstrom resolution
Total Genus 68
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
68
sequence length
226
structure length
207
Chain Sequence
MNIILKISGKFFDEDNVDNLIVLRQSIKELADNGFRVGIVTGGGSTARRYIKLAREIGIGEAYLDLLGIWASRLNAYLVMFSLQDLAYMHVPQSLEEFIQDWSHGKVVVTGGFQPGQSTAAVAALVAEASSSKTLVVATNVDGVYEKDPRIYADVKLIPHLTTQDLRKILLLDPLAIKIVERSKIRVIVMNYRKLNRIEVSSIIEPV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
source organism Sulfolobus solfataricus
publication title Structural and Enzymatic Investigation of the Sulfolobus Solfataricus Uridylate Kinase Shows Competitive Utp Inhibition and the Lack of GTP Stimulation
pubmed doi rcsb
molecule keywords URIDYLATE KINASE
total genus 68
structure length 207
sequence length 226
chains with identical sequence B, C, D, E, F
ec nomenclature ec 2.7.4.22: UMP kinase.
pdb deposition date 2006-09-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 2j4kA00
4F6TB 3S6HA 4NDRB 4NDOA 2V4YA 4NDPB 4I49A 3D2MA 2BUFA 2J5TA 2J0WA 2E9YA 1E19A 3WWMA 4A7WA 3K56A 4OLCA 1Z9DA 3K4OA 2AKOA 3C20A 1OHAA 1GSJA 4AXSA 2HMFA 3L76A 3D40A 3C1NA 3QUNA 2WE4A 2V5HA 2OGXA 3S6GA 2JJXA 4NDOB 2RD5A 3B8GA 2R98A 1B7BA 2BMUA 2J5VA 3QVHA 3TVIA 3L86A 2R8VA 4Q1TA 3K52A 2W21A 2BNFA 2BNEA 2AP9A 2BRIA 2WXBA 4NDPA 3LL9A 4NDQA 2J0XA 4A7XA 2JJ4A 4JZ8A 3QUOA 3NWYA 1OH9A 4AB7A 3EK6A 2JI5A 2BNDA 2X2WA 3AAWA 2BTYA 3U6UA 3QURA 2WE5A 3D2PA 3AB4A 1YBDA 4F6TA 2J4JA 4USJA 4NDRA 2J4KA 3ZZHA 2A1FA 4JZ9A 3LKKA 3QVFA 3K4YA 3D41A 4JZ7A 4NDQB 3ZZFA 2OGXB 2BRXA 3LL5A 2VA1A 1GS5A 3ZZGA 3T7BA 3C1MA 3AB2A 1OHBA 2IJ9A 3S6KA 3WWNA 3EK5A 3KZFA 2CDQA 4KZTA 3ZZIA 2J4LA
chains in the Genus database with same CATH superfamily
4F6TB 3S6HA 4NDRB 4NDOA 2V4YA 4NDPB 4I49A 3D2MA 2BUFA 2J5TA 2J0WA 2E9YA 1E19A 3WWMA 4A7WA 3K56A 4OLCA 1Z9DA 3K4OA 2AKOA 3C20A 1OHAA 1GSJA 4AXSA 2HMFA 3L76A 3D40A 3C1NA 3QUNA 2WE4A 2V5HA 2OGXA 3S6GA 2JJXA 4NDOB 2RD5A 3B8GA 2R98A 1B7BA 2BMUA 2J5VA 3QVHA 3TVIA 3L86A 2R8VA 4Q1TA 3K52A 2W21A 2BNFA 2BNEA 2AP9A 2BRIA 2WXBA 4NDPA 3LL9A 4NDQA 2J0XA 4A7XA 2JJ4A 4JZ8A 3QUOA 3NWYA 1OH9A 4AB7A 3EK6A 2JI5A 2BNDA 2X2WA 3AAWA 2BTYA 3U6UA 3QURA 2WE5A 3D2PA 3AB4A 1YBDA 4F6TA 2J4JA 4USJA 4NDRA 2J4KA 3ZZHA 2A1FA 4JZ9A 3LKKA 3QVFA 3K4YA 3D41A 4JZ7A 4NDQB 3ZZFA 2OGXB 2BRXA 3LL5A 2VA1A 1GS5A 3ZZGA 3T7BA 3C1MA 3AB2A 1OHBA 2IJ9A 3S6KA 3WWNA 3EK5A 3KZFA 2CDQA 4KZTA 3ZZIA 2J4LA
chains in the Genus database with same CATH topology
4F6TB 3S6HA 4NDRB 4NDOA 2V4YA 4NDPB 4I49A 3D2MA 2BUFA 2J5TA 2J0WA 2E9YA 1E19A 3WWMA 4A7WA 3K56A 4OLCA 1Z9DA 3K4OA 2AKOA 3C20A 1OHAA 1GSJA 4AXSA 2HMFA 3L76A 3D40A 3C1NA 3QUNA 2WE4A 2V5HA 2OGXA 3S6GA 2JJXA 4NDOB 2RD5A 3B8GA 2R98A 1B7BA 2BMUA 2J5VA 3QVHA 3TVIA 3L86A 2R8VA 4Q1TA 3K52A 2W21A 2BNFA 2BNEA 2AP9A 2BRIA 2WXBA 4NDPA 3LL9A 4NDQA 2J0XA 4A7XA 2JJ4A 4JZ8A 3QUOA 3NWYA 1OH9A 4AB7A 3EK6A 2JI5A 2BNDA 2X2WA 3AAWA 2BTYA 3U6UA 3QURA 2WE5A 3D2PA 3AB4A 1YBDA 4F6TA 2J4JA 4USJA 4NDRA 2J4KA 3ZZHA 2A1FA 4JZ9A 3LKKA 3QVFA 3K4YA 3D41A 4JZ7A 4NDQB 3ZZFA 2OGXB 2BRXA 3LL5A 2VA1A 1GS5A 3ZZGA 3T7BA 3C1MA 3AB2A 1OHBA 2IJ9A 3S6KA 3WWNA 3EK5A 3KZFA 2CDQA 4KZTA 3ZZIA 2J4LA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4F6T B;  3S6H A;  4NDR B;  4NDO A;  2V4Y A;  4NDP B;  4I49 A;  3D2M A;  2BUF A;  2J5T A;  2J0W A;  2E9Y A;  1E19 A;  3WWM A;  4A7W A;  3K56 A;  4OLC A;  1Z9D A;  3K4O A;  2AKO A;  3C20 A;  1OHA A;  1GSJ A;  4AXS A;  2HMF A;  3L76 A;  3D40 A;  3C1N A;  3QUN A;  2WE4 A;  2V5H A;  2OGX A;  3S6G A;  2JJX A;  4NDO B;  2RD5 A;  3B8G A;  2R98 A;  1B7B A;  2BMU A;  2J5V A;  3QVH A;  3TVI A;  3L86 A;  2R8V A;  4Q1T A;  3K52 A;  2W21 A;  2BNF A;  2BNE A;  2AP9 A;  2BRI A;  2WXB A;  4NDP A;  3LL9 A;  4NDQ A;  2J0X A;  4A7X A;  2JJ4 A;  4JZ8 A;  3QUO A;  3NWY A;  1OH9 A;  4AB7 A;  3EK6 A;  2JI5 A;  2BND A;  2X2W A;  3AAW A;  2BTY A;  3U6U A;  3QUR A;  2WE5 A;  3D2P A;  3AB4 A;  1YBD A;  4F6T A;  2J4J A;  4USJ A;  4NDR A;  2J4K A;  3ZZH A;  2A1F A;  4JZ9 A;  3LKK A;  3QVF A;  3K4Y A;  3D41 A;  4JZ7 A;  4NDQ B;  3ZZF A;  2OGX B;  2BRX A;  3LL5 A;  2VA1 A;  1GS5 A;  3ZZG A;  3T7B A;  3C1M A;  3AB2 A;  1OHB A;  2IJ9 A;  3S6K A;  3WWN A;  3EK5 A;  3KZF A;  2CDQ A;  4KZT A;  3ZZI A;  2J4L A; 
#chains in the Genus database with same CATH topology
 4F6T B;  3S6H A;  4NDR B;  4NDO A;  2V4Y A;  4NDP B;  4I49 A;  3D2M A;  2BUF A;  2J5T A;  2J0W A;  2E9Y A;  1E19 A;  3WWM A;  4A7W A;  3K56 A;  4OLC A;  1Z9D A;  3K4O A;  2AKO A;  3C20 A;  1OHA A;  1GSJ A;  4AXS A;  2HMF A;  3L76 A;  3D40 A;  3C1N A;  3QUN A;  2WE4 A;  2V5H A;  2OGX A;  3S6G A;  2JJX A;  4NDO B;  2RD5 A;  3B8G A;  2R98 A;  1B7B A;  2BMU A;  2J5V A;  3QVH A;  3TVI A;  3L86 A;  2R8V A;  4Q1T A;  3K52 A;  2W21 A;  2BNF A;  2BNE A;  2AP9 A;  2BRI A;  2WXB A;  4NDP A;  3LL9 A;  4NDQ A;  2J0X A;  4A7X A;  2JJ4 A;  4JZ8 A;  3QUO A;  3NWY A;  1OH9 A;  4AB7 A;  3EK6 A;  2JI5 A;  2BND A;  2X2W A;  3AAW A;  2BTY A;  3U6U A;  3QUR A;  2WE5 A;  3D2P A;  3AB4 A;  1YBD A;  4F6T A;  2J4J A;  4USJ A;  4NDR A;  2J4K A;  3ZZH A;  2A1F A;  4JZ9 A;  3LKK A;  3QVF A;  3K4Y A;  3D41 A;  4JZ7 A;  4NDQ B;  3ZZF A;  2OGX B;  2BRX A;  3LL5 A;  2VA1 A;  1GS5 A;  3ZZG A;  3T7B A;  3C1M A;  3AB2 A;  1OHB A;  2IJ9 A;  3S6K A;  3WWN A;  3EK5 A;  3KZF A;  2CDQ A;  4KZT A;  3ZZI A;  2J4L A; 
#chains in the Genus database with same CATH homology
 4F6T B;  3S6H A;  4NDR B;  4NDO A;  2V4Y A;  4NDP B;  4I49 A;  3D2M A;  2BUF A;  2J5T A;  2J0W A;  2E9Y A;  1E19 A;  3WWM A;  4A7W A;  3K56 A;  4OLC A;  1Z9D A;  3K4O A;  2AKO A;  3C20 A;  1OHA A;  1GSJ A;  4AXS A;  2HMF A;  3L76 A;  3D40 A;  3C1N A;  3QUN A;  2WE4 A;  2V5H A;  2OGX A;  3S6G A;  2JJX A;  4NDO B;  2RD5 A;  3B8G A;  2R98 A;  1B7B A;  2BMU A;  2J5V A;  3QVH A;  3TVI A;  3L86 A;  2R8V A;  4Q1T A;  3K52 A;  2W21 A;  2BNF A;  2BNE A;  2AP9 A;  2BRI A;  2WXB A;  4NDP A;  3LL9 A;  4NDQ A;  2J0X A;  4A7X A;  2JJ4 A;  4JZ8 A;  3QUO A;  3NWY A;  1OH9 A;  4AB7 A;  3EK6 A;  2JI5 A;  2BND A;  2X2W A;  3AAW A;  2BTY A;  3U6U A;  3QUR A;  2WE5 A;  3D2P A;  3AB4 A;  1YBD A;  4F6T A;  2J4J A;  4USJ A;  4NDR A;  2J4K A;  3ZZH A;  2A1F A;  4JZ9 A;  3LKK A;  3QVF A;  3K4Y A;  3D41 A;  4JZ7 A;  4NDQ B;  3ZZF A;  2OGX B;  2BRX A;  3LL5 A;  2VA1 A;  1GS5 A;  3ZZG A;  3T7B A;  3C1M A;  3AB2 A;  1OHB A;  2IJ9 A;  3S6K A;  3WWN A;  3EK5 A;  3KZF A;  2CDQ A;  4KZT A;  3ZZI A;  2J4L A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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