2J4KA

Crystal structure of uridylate kinase from sulfolobus solfataricus in complex with ump to 2.2 angstrom resolution
Total Genus 68
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
68
sequence length
226
structure length
207
Chain Sequence
MNIILKISGKFFDEDNVDNLIVLRQSIKELADNGFRVGIVTGGGSTARRYIKLAREIGIGEAYLDLLGIWASRLNAYLVMFSLQDLAYMHVPQSLEEFIQDWSHGKVVVTGGFQPGQSTAAVAALVAEASSSKTLVVATNVDGVYEKDPRIYADVKLIPHLTTQDLRKILLLDPLAIKIVERSKIRVIVMNYRKLNRIEVSSIIEPV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords URIDYLATE KINASE
publication title Structural and Enzymatic Investigation of the Sulfolobus Solfataricus Uridylate Kinase Shows Competitive Utp Inhibition and the Lack of GTP Stimulation
pubmed doi rcsb
source organism Sulfolobus solfataricus
total genus 68
structure length 207
sequence length 226
chains with identical sequence B, C, D, E, F
ec nomenclature ec 2.7.4.22: UMP kinase.
pdb deposition date 2006-09-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 2j4kA00
2JJXA 3U6UA 1OHAA 2RD5A 3ZZIA 3L76A 2BNEA 4JZ9A 3S6KA 4F6TB 2E9YA 1OHBA 2WE5A 3K56A 3C1NA 3K4YA 4NDQB 4A7XA 2CDQA 2WXBA 2OGXA 4NDPA 3EK6A 3TVIA 2BTYA 3LKKA 3WWNA 4NDRB 3LL9A 1Z9DA 2AP9A 3LL5A 1GSJA 3ZZFA 1OH9A 2J0XA 3S6HA 4NDOB 2A1FA 3C1MA 1B7BA 2VA1A 3D2MA 4AB7A 2BNDA 2BNFA 1E19A 4OLCA 2JI5A 2WE4A 3D2PA 2J0WA 3K4OA 3D40A 3ZZHA 3AAWA 2BUFA 3AB4A 3T7BA 2V4YA 4JZ8A 2JJ4A 1GS5A 4NDQA 4AXSA 3EK5A 2X2WA 2BRXA 2V5HA 2HMFA 3D41A 3AB2A 3NWYA 2BMUA 3QVFA 2J5TA 2OGXB 4NDPB 4I49A 4NDRA 2R8VA 3L86A 2J4JA 3S6GA 4Q1TA 3QURA 2IJ9A 3K52A 2W21A 4USJA 3QVHA 4F6TA 4KZTA 2J4LA 4NDOA 3WWMA 2J4KA 3QUOA 4JZ7A 3ZZGA 3QUNA 2BRIA 3B8GA 4A7WA 3C20A 2AKOA 1YBDA 2R98A 3KZFA 2J5VA
chains in the Genus database with same CATH superfamily
2JJXA 3U6UA 1OHAA 2RD5A 3ZZIA 3L76A 2BNEA 4JZ9A 3S6KA 4F6TB 2E9YA 1OHBA 2WE5A 3K56A 3C1NA 3K4YA 4NDQB 4A7XA 2CDQA 2WXBA 2OGXA 4NDPA 3EK6A 3TVIA 2BTYA 3LKKA 3WWNA 4NDRB 3LL9A 1Z9DA 2AP9A 3LL5A 1GSJA 3ZZFA 1OH9A 2J0XA 3S6HA 4NDOB 2A1FA 3C1MA 1B7BA 2VA1A 3D2MA 4AB7A 2BNDA 2BNFA 1E19A 4OLCA 2JI5A 2WE4A 3D2PA 2J0WA 3K4OA 3D40A 3ZZHA 3AAWA 2BUFA 3AB4A 3T7BA 2V4YA 4JZ8A 2JJ4A 1GS5A 4NDQA 4AXSA 3EK5A 2X2WA 2BRXA 2V5HA 2HMFA 3D41A 3AB2A 3NWYA 2BMUA 3QVFA 2J5TA 2OGXB 4NDPB 4I49A 4NDRA 2R8VA 3L86A 2J4JA 3S6GA 4Q1TA 3QURA 2IJ9A 3K52A 2W21A 4USJA 3QVHA 4F6TA 4KZTA 2J4LA 4NDOA 3WWMA 2J4KA 3QUOA 4JZ7A 3ZZGA 3QUNA 2BRIA 3B8GA 4A7WA 3C20A 2AKOA 1YBDA 2R98A 3KZFA 2J5VA
chains in the Genus database with same CATH topology
2JJXA 3U6UA 1OHAA 2RD5A 3ZZIA 3L76A 2BNEA 4JZ9A 3S6KA 4F6TB 2E9YA 1OHBA 2WE5A 3K56A 3C1NA 3K4YA 4NDQB 4A7XA 2CDQA 2WXBA 2OGXA 4NDPA 3EK6A 3TVIA 2BTYA 3LKKA 3WWNA 4NDRB 3LL9A 1Z9DA 2AP9A 3LL5A 1GSJA 3ZZFA 1OH9A 2J0XA 3S6HA 4NDOB 2A1FA 3C1MA 1B7BA 2VA1A 3D2MA 4AB7A 2BNDA 2BNFA 1E19A 4OLCA 2JI5A 2WE4A 3D2PA 2J0WA 3K4OA 3D40A 3ZZHA 3AAWA 2BUFA 3AB4A 3T7BA 2V4YA 4JZ8A 2JJ4A 1GS5A 4NDQA 4AXSA 3EK5A 2X2WA 2BRXA 2V5HA 2HMFA 3D41A 3AB2A 3NWYA 2BMUA 3QVFA 2J5TA 2OGXB 4NDPB 4I49A 4NDRA 2R8VA 3L86A 2J4JA 3S6GA 4Q1TA 3QURA 2IJ9A 3K52A 2W21A 4USJA 3QVHA 4F6TA 4KZTA 2J4LA 4NDOA 3WWMA 2J4KA 3QUOA 4JZ7A 3ZZGA 3QUNA 2BRIA 3B8GA 4A7WA 3C20A 2AKOA 1YBDA 2R98A 3KZFA 2J5VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JJX A;  3U6U A;  1OHA A;  2RD5 A;  3ZZI A;  3L76 A;  2BNE A;  4JZ9 A;  3S6K A;  4F6T B;  2E9Y A;  1OHB A;  2WE5 A;  3K56 A;  3C1N A;  3K4Y A;  4NDQ B;  4A7X A;  2CDQ A;  2WXB A;  2OGX A;  4NDP A;  3EK6 A;  3TVI A;  2BTY A;  3LKK A;  3WWN A;  4NDR B;  3LL9 A;  1Z9D A;  2AP9 A;  3LL5 A;  1GSJ A;  3ZZF A;  1OH9 A;  2J0X A;  3S6H A;  4NDO B;  2A1F A;  3C1M A;  1B7B A;  2VA1 A;  3D2M A;  4AB7 A;  2BND A;  2BNF A;  1E19 A;  4OLC A;  2JI5 A;  2WE4 A;  3D2P A;  2J0W A;  3K4O A;  3D40 A;  3ZZH A;  3AAW A;  2BUF A;  3AB4 A;  3T7B A;  2V4Y A;  4JZ8 A;  2JJ4 A;  1GS5 A;  4NDQ A;  4AXS A;  3EK5 A;  2X2W A;  2BRX A;  2V5H A;  2HMF A;  3D41 A;  3AB2 A;  3NWY A;  2BMU A;  3QVF A;  2J5T A;  2OGX B;  4NDP B;  4I49 A;  4NDR A;  2R8V A;  3L86 A;  2J4J A;  3S6G A;  4Q1T A;  3QUR A;  2IJ9 A;  3K52 A;  2W21 A;  4USJ A;  3QVH A;  4F6T A;  4KZT A;  2J4L A;  4NDO A;  3WWM A;  2J4K A;  3QUO A;  4JZ7 A;  3ZZG A;  3QUN A;  2BRI A;  3B8G A;  4A7W A;  3C20 A;  2AKO A;  1YBD A;  2R98 A;  3KZF A;  2J5V A; 
#chains in the Genus database with same CATH topology
 2JJX A;  3U6U A;  1OHA A;  2RD5 A;  3ZZI A;  3L76 A;  2BNE A;  4JZ9 A;  3S6K A;  4F6T B;  2E9Y A;  1OHB A;  2WE5 A;  3K56 A;  3C1N A;  3K4Y A;  4NDQ B;  4A7X A;  2CDQ A;  2WXB A;  2OGX A;  4NDP A;  3EK6 A;  3TVI A;  2BTY A;  3LKK A;  3WWN A;  4NDR B;  3LL9 A;  1Z9D A;  2AP9 A;  3LL5 A;  1GSJ A;  3ZZF A;  1OH9 A;  2J0X A;  3S6H A;  4NDO B;  2A1F A;  3C1M A;  1B7B A;  2VA1 A;  3D2M A;  4AB7 A;  2BND A;  2BNF A;  1E19 A;  4OLC A;  2JI5 A;  2WE4 A;  3D2P A;  2J0W A;  3K4O A;  3D40 A;  3ZZH A;  3AAW A;  2BUF A;  3AB4 A;  3T7B A;  2V4Y A;  4JZ8 A;  2JJ4 A;  1GS5 A;  4NDQ A;  4AXS A;  3EK5 A;  2X2W A;  2BRX A;  2V5H A;  2HMF A;  3D41 A;  3AB2 A;  3NWY A;  2BMU A;  3QVF A;  2J5T A;  2OGX B;  4NDP B;  4I49 A;  4NDR A;  2R8V A;  3L86 A;  2J4J A;  3S6G A;  4Q1T A;  3QUR A;  2IJ9 A;  3K52 A;  2W21 A;  4USJ A;  3QVH A;  4F6T A;  4KZT A;  2J4L A;  4NDO A;  3WWM A;  2J4K A;  3QUO A;  4JZ7 A;  3ZZG A;  3QUN A;  2BRI A;  3B8G A;  4A7W A;  3C20 A;  2AKO A;  1YBD A;  2R98 A;  3KZF A;  2J5V A; 
#chains in the Genus database with same CATH homology
 2JJX A;  3U6U A;  1OHA A;  2RD5 A;  3ZZI A;  3L76 A;  2BNE A;  4JZ9 A;  3S6K A;  4F6T B;  2E9Y A;  1OHB A;  2WE5 A;  3K56 A;  3C1N A;  3K4Y A;  4NDQ B;  4A7X A;  2CDQ A;  2WXB A;  2OGX A;  4NDP A;  3EK6 A;  3TVI A;  2BTY A;  3LKK A;  3WWN A;  4NDR B;  3LL9 A;  1Z9D A;  2AP9 A;  3LL5 A;  1GSJ A;  3ZZF A;  1OH9 A;  2J0X A;  3S6H A;  4NDO B;  2A1F A;  3C1M A;  1B7B A;  2VA1 A;  3D2M A;  4AB7 A;  2BND A;  2BNF A;  1E19 A;  4OLC A;  2JI5 A;  2WE4 A;  3D2P A;  2J0W A;  3K4O A;  3D40 A;  3ZZH A;  3AAW A;  2BUF A;  3AB4 A;  3T7B A;  2V4Y A;  4JZ8 A;  2JJ4 A;  1GS5 A;  4NDQ A;  4AXS A;  3EK5 A;  2X2W A;  2BRX A;  2V5H A;  2HMF A;  3D41 A;  3AB2 A;  3NWY A;  2BMU A;  3QVF A;  2J5T A;  2OGX B;  4NDP B;  4I49 A;  4NDR A;  2R8V A;  3L86 A;  2J4J A;  3S6G A;  4Q1T A;  3QUR A;  2IJ9 A;  3K52 A;  2W21 A;  4USJ A;  3QVH A;  4F6T A;  4KZT A;  2J4L A;  4NDO A;  3WWM A;  2J4K A;  3QUO A;  4JZ7 A;  3ZZG A;  3QUN A;  2BRI A;  3B8G A;  4A7W A;  3C20 A;  2AKO A;  1YBD A;  2R98 A;  3KZF A;  2J5V A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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