2J4KA

Crystal structure of uridylate kinase from sulfolobus solfataricus in complex with ump to 2.2 angstrom resolution
Total Genus 68
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
68
sequence length
226
structure length
207
Chain Sequence
MNIILKISGKFFDEDNVDNLIVLRQSIKELADNGFRVGIVTGGGSTARRYIKLAREIGIGEAYLDLLGIWASRLNAYLVMFSLQDLAYMHVPQSLEEFIQDWSHGKVVVTGGFQPGQSTAAVAALVAEASSSKTLVVATNVDGVYEKDPRIYADVKLIPHLTTQDLRKILLLDPLAIKIVERSKIRVIVMNYRKLNRIEVSSIIEPV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords URIDYLATE KINASE
publication title Structural and Enzymatic Investigation of the Sulfolobus Solfataricus Uridylate Kinase Shows Competitive Utp Inhibition and the Lack of GTP Stimulation
pubmed doi rcsb
source organism Sulfolobus solfataricus
molecule tags Transferase
total genus 68
structure length 207
sequence length 226
chains with identical sequence B, C, D, E, F
ec nomenclature ec 2.7.4.22: UMP kinase.
pdb deposition date 2006-09-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 2j4kA00
2BRXA 4NDQB 3AB2A 3WWMA 3ZZHA 4AB7A 4JZ8A 3B8GA 4I49A 3D2MA 4NDOA 3AB4A 2BNDA 3QUNA 2BMUA 3K4YA 2J5VA 3ZZFA 2BTYA 2X2WA 2WE5A 3S6KA 3ZZGA 2J0WA 3QVHA 2R8VA 4JZ7A 2JJXA 4F6TB 1OHAA 2BNFA 3TVIA 4NDRB 2BNEA 3C1MA 3LKKA 1E19A 3QURA 4NDPA 4Q1TA 3ZZIA 3KZFA 4NDQA 2J4JA 4USJA 3T7BA 3S6HA 2V5HA 4A7WA 3LL5A 2J0XA 3L76A 2W21A 1OHBA 2AKOA 3C20A 3WWNA 3AAWA 1YBDA 2OGXB 3S6GA 4F6TA 2CDQA 2RD5A 3L86A 4KZTA 4NDRA 4OLCA 2JI5A 4A7XA 3K4OA 2J4LA 2WXBA 1OH9A 3EK6A 2VA1A 2JJ4A 3D41A 4NDOB 2WE4A 2J4KA 2HMFA 3QUOA 4JZ9A 2IJ9A 1GS5A 3QVFA 2V4YA 3EK5A 2J5TA 3U6UA 2R98A 2E9YA 2A1FA 3K52A 3LL9A 1GSJA 1B7BA 3NWYA 4AXSA 3D2PA 1Z9DA 2OGXA 2AP9A 2BRIA 2BUFA 3C1NA 4NDPB 3D40A 3K56A
chains in the Genus database with same CATH superfamily
2BRXA 4NDQB 3AB2A 3WWMA 3ZZHA 4AB7A 4JZ8A 3B8GA 4I49A 3D2MA 4NDOA 3AB4A 2BNDA 3QUNA 2BMUA 3K4YA 2J5VA 3ZZFA 2BTYA 2X2WA 2WE5A 3S6KA 3ZZGA 2J0WA 3QVHA 2R8VA 4JZ7A 2JJXA 4F6TB 1OHAA 2BNFA 3TVIA 4NDRB 2BNEA 3C1MA 3LKKA 1E19A 3QURA 4NDPA 4Q1TA 3ZZIA 3KZFA 4NDQA 2J4JA 4USJA 3T7BA 3S6HA 2V5HA 4A7WA 3LL5A 2J0XA 3L76A 2W21A 1OHBA 2AKOA 3C20A 3WWNA 3AAWA 1YBDA 2OGXB 3S6GA 4F6TA 2CDQA 2RD5A 3L86A 4KZTA 4NDRA 4OLCA 2JI5A 4A7XA 3K4OA 2J4LA 2WXBA 1OH9A 3EK6A 2VA1A 2JJ4A 3D41A 4NDOB 2WE4A 2J4KA 2HMFA 3QUOA 4JZ9A 2IJ9A 1GS5A 3QVFA 2V4YA 3EK5A 2J5TA 3U6UA 2R98A 2E9YA 2A1FA 3K52A 3LL9A 1GSJA 1B7BA 3NWYA 4AXSA 3D2PA 1Z9DA 2OGXA 2AP9A 2BRIA 2BUFA 3C1NA 4NDPB 3D40A 3K56A
chains in the Genus database with same CATH topology
2BRXA 4NDQB 3AB2A 3WWMA 3ZZHA 4AB7A 4JZ8A 3B8GA 4I49A 3D2MA 4NDOA 3AB4A 2BNDA 3QUNA 2BMUA 3K4YA 2J5VA 3ZZFA 2BTYA 2X2WA 2WE5A 3S6KA 3ZZGA 2J0WA 3QVHA 2R8VA 4JZ7A 2JJXA 4F6TB 1OHAA 2BNFA 3TVIA 4NDRB 2BNEA 3C1MA 3LKKA 1E19A 3QURA 4NDPA 4Q1TA 3ZZIA 3KZFA 4NDQA 2J4JA 4USJA 3T7BA 3S6HA 2V5HA 4A7WA 3LL5A 2J0XA 3L76A 2W21A 1OHBA 2AKOA 3C20A 3WWNA 3AAWA 1YBDA 2OGXB 3S6GA 4F6TA 2CDQA 2RD5A 3L86A 4KZTA 4NDRA 4OLCA 2JI5A 4A7XA 3K4OA 2J4LA 2WXBA 1OH9A 3EK6A 2VA1A 2JJ4A 3D41A 4NDOB 2WE4A 2J4KA 2HMFA 3QUOA 4JZ9A 2IJ9A 1GS5A 3QVFA 2V4YA 3EK5A 2J5TA 3U6UA 2R98A 2E9YA 2A1FA 3K52A 3LL9A 1GSJA 1B7BA 3NWYA 4AXSA 3D2PA 1Z9DA 2OGXA 2AP9A 2BRIA 2BUFA 3C1NA 4NDPB 3D40A 3K56A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BRX A;  4NDQ B;  3AB2 A;  3WWM A;  3ZZH A;  4AB7 A;  4JZ8 A;  3B8G A;  4I49 A;  3D2M A;  4NDO A;  3AB4 A;  2BND A;  3QUN A;  2BMU A;  3K4Y A;  2J5V A;  3ZZF A;  2BTY A;  2X2W A;  2WE5 A;  3S6K A;  3ZZG A;  2J0W A;  3QVH A;  2R8V A;  4JZ7 A;  2JJX A;  4F6T B;  1OHA A;  2BNF A;  3TVI A;  4NDR B;  2BNE A;  3C1M A;  3LKK A;  1E19 A;  3QUR A;  4NDP A;  4Q1T A;  3ZZI A;  3KZF A;  4NDQ A;  2J4J A;  4USJ A;  3T7B A;  3S6H A;  2V5H A;  4A7W A;  3LL5 A;  2J0X A;  3L76 A;  2W21 A;  1OHB A;  2AKO A;  3C20 A;  3WWN A;  3AAW A;  1YBD A;  2OGX B;  3S6G A;  4F6T A;  2CDQ A;  2RD5 A;  3L86 A;  4KZT A;  4NDR A;  4OLC A;  2JI5 A;  4A7X A;  3K4O A;  2J4L A;  2WXB A;  1OH9 A;  3EK6 A;  2VA1 A;  2JJ4 A;  3D41 A;  4NDO B;  2WE4 A;  2J4K A;  2HMF A;  3QUO A;  4JZ9 A;  2IJ9 A;  1GS5 A;  3QVF A;  2V4Y A;  3EK5 A;  2J5T A;  3U6U A;  2R98 A;  2E9Y A;  2A1F A;  3K52 A;  3LL9 A;  1GSJ A;  1B7B A;  3NWY A;  4AXS A;  3D2P A;  1Z9D A;  2OGX A;  2AP9 A;  2BRI A;  2BUF A;  3C1N A;  4NDP B;  3D40 A;  3K56 A; 
#chains in the Genus database with same CATH topology
 2BRX A;  4NDQ B;  3AB2 A;  3WWM A;  3ZZH A;  4AB7 A;  4JZ8 A;  3B8G A;  4I49 A;  3D2M A;  4NDO A;  3AB4 A;  2BND A;  3QUN A;  2BMU A;  3K4Y A;  2J5V A;  3ZZF A;  2BTY A;  2X2W A;  2WE5 A;  3S6K A;  3ZZG A;  2J0W A;  3QVH A;  2R8V A;  4JZ7 A;  2JJX A;  4F6T B;  1OHA A;  2BNF A;  3TVI A;  4NDR B;  2BNE A;  3C1M A;  3LKK A;  1E19 A;  3QUR A;  4NDP A;  4Q1T A;  3ZZI A;  3KZF A;  4NDQ A;  2J4J A;  4USJ A;  3T7B A;  3S6H A;  2V5H A;  4A7W A;  3LL5 A;  2J0X A;  3L76 A;  2W21 A;  1OHB A;  2AKO A;  3C20 A;  3WWN A;  3AAW A;  1YBD A;  2OGX B;  3S6G A;  4F6T A;  2CDQ A;  2RD5 A;  3L86 A;  4KZT A;  4NDR A;  4OLC A;  2JI5 A;  4A7X A;  3K4O A;  2J4L A;  2WXB A;  1OH9 A;  3EK6 A;  2VA1 A;  2JJ4 A;  3D41 A;  4NDO B;  2WE4 A;  2J4K A;  2HMF A;  3QUO A;  4JZ9 A;  2IJ9 A;  1GS5 A;  3QVF A;  2V4Y A;  3EK5 A;  2J5T A;  3U6U A;  2R98 A;  2E9Y A;  2A1F A;  3K52 A;  3LL9 A;  1GSJ A;  1B7B A;  3NWY A;  4AXS A;  3D2P A;  1Z9D A;  2OGX A;  2AP9 A;  2BRI A;  2BUF A;  3C1N A;  4NDP B;  3D40 A;  3K56 A; 
#chains in the Genus database with same CATH homology
 2BRX A;  4NDQ B;  3AB2 A;  3WWM A;  3ZZH A;  4AB7 A;  4JZ8 A;  3B8G A;  4I49 A;  3D2M A;  4NDO A;  3AB4 A;  2BND A;  3QUN A;  2BMU A;  3K4Y A;  2J5V A;  3ZZF A;  2BTY A;  2X2W A;  2WE5 A;  3S6K A;  3ZZG A;  2J0W A;  3QVH A;  2R8V A;  4JZ7 A;  2JJX A;  4F6T B;  1OHA A;  2BNF A;  3TVI A;  4NDR B;  2BNE A;  3C1M A;  3LKK A;  1E19 A;  3QUR A;  4NDP A;  4Q1T A;  3ZZI A;  3KZF A;  4NDQ A;  2J4J A;  4USJ A;  3T7B A;  3S6H A;  2V5H A;  4A7W A;  3LL5 A;  2J0X A;  3L76 A;  2W21 A;  1OHB A;  2AKO A;  3C20 A;  3WWN A;  3AAW A;  1YBD A;  2OGX B;  3S6G A;  4F6T A;  2CDQ A;  2RD5 A;  3L86 A;  4KZT A;  4NDR A;  4OLC A;  2JI5 A;  4A7X A;  3K4O A;  2J4L A;  2WXB A;  1OH9 A;  3EK6 A;  2VA1 A;  2JJ4 A;  3D41 A;  4NDO B;  2WE4 A;  2J4K A;  2HMF A;  3QUO A;  4JZ9 A;  2IJ9 A;  1GS5 A;  3QVF A;  2V4Y A;  3EK5 A;  2J5T A;  3U6U A;  2R98 A;  2E9Y A;  2A1F A;  3K52 A;  3LL9 A;  1GSJ A;  1B7B A;  3NWY A;  4AXS A;  3D2P A;  1Z9D A;  2OGX A;  2AP9 A;  2BRI A;  2BUF A;  3C1N A;  4NDP B;  3D40 A;  3K56 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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