2J4KA

Crystal structure of uridylate kinase from sulfolobus solfataricus in complex with ump to 2.2 angstrom resolution
Total Genus 68
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
68
sequence length
226
structure length
207
Chain Sequence
MNIILKISGKFFDEDNVDNLIVLRQSIKELADNGFRVGIVTGGGSTARRYIKLAREIGIGEAYLDLLGIWASRLNAYLVMFSLQDLAYMHVPQSLEEFIQDWSHGKVVVTGGFQPGQSTAAVAALVAEASSSKTLVVATNVDGVYEKDPRIYADVKLIPHLTTQDLRKILLLDPLAIKIVERSKIRVIVMNYRKLNRIEVSSIIEPV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords URIDYLATE KINASE
publication title Structural and Enzymatic Investigation of the Sulfolobus Solfataricus Uridylate Kinase Shows Competitive Utp Inhibition and the Lack of GTP Stimulation
pubmed doi rcsb
source organism Sulfolobus solfataricus
molecule tags Transferase
total genus 68
structure length 207
sequence length 226
chains with identical sequence B, C, D, E, F
ec nomenclature ec 2.7.4.22: UMP kinase.
pdb deposition date 2006-09-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 2j4kA00
3LKKA 3L86A 4AB7A 2BNEA 1B7BA 3QUOA 2AP9A 2BMUA 4OLCA 1GS5A 4NDRA 2J0WA 2WE4A 1OH9A 4Q1TA 2HMFA 2A1FA 3U6UA 2J4JA 3NWYA 4USJA 2BUFA 3B8GA 3AAWA 4JZ8A 3LL5A 3TVIA 2BTYA 3D40A 2V4YA 4NDOB 1Z9DA 4KZTA 4AXSA 3ZZIA 2J5TA 4NDQB 4A7XA 3KZFA 3EK6A 3QVHA 2JJXA 3D2MA 2V5HA 2E9YA 2J4LA 4NDOA 3S6KA 4NDQA 3QUNA 2OGXB 3EK5A 3C20A 3D41A 3K4YA 2BRIA 4NDPB 2AKOA 2WE5A 4A7WA 2BNFA 2JI5A 3L76A 2W21A 3ZZHA 3S6HA 2JJ4A 3ZZFA 3D2PA 3QVFA 2OGXA 4JZ9A 4JZ7A 3QURA 4F6TB 4I49A 3LL9A 2BRXA 3C1NA 1OHAA 2CDQA 4NDPA 3WWNA 2J5VA 2X2WA 3C1MA 1GSJA 3AB4A 2R98A 2BNDA 3S6GA 3T7BA 2WXBA 2J0XA 2RD5A 2IJ9A 4NDRB 2R8VA 4F6TA 3AB2A 3WWMA 1OHBA 3K52A 2J4KA 2VA1A 1E19A 3ZZGA 1YBDA 3K56A 3K4OA
chains in the Genus database with same CATH superfamily
3LKKA 3L86A 4AB7A 2BNEA 1B7BA 3QUOA 2AP9A 2BMUA 4OLCA 1GS5A 4NDRA 2J0WA 2WE4A 1OH9A 4Q1TA 2HMFA 2A1FA 3U6UA 2J4JA 3NWYA 4USJA 2BUFA 3B8GA 3AAWA 4JZ8A 3LL5A 3TVIA 2BTYA 3D40A 2V4YA 4NDOB 1Z9DA 4KZTA 4AXSA 3ZZIA 2J5TA 4NDQB 4A7XA 3KZFA 3EK6A 3QVHA 2JJXA 3D2MA 2V5HA 2E9YA 2J4LA 4NDOA 3S6KA 4NDQA 3QUNA 2OGXB 3EK5A 3C20A 3D41A 3K4YA 2BRIA 4NDPB 2AKOA 2WE5A 4A7WA 2BNFA 2JI5A 3L76A 2W21A 3ZZHA 3S6HA 2JJ4A 3ZZFA 3D2PA 3QVFA 2OGXA 4JZ9A 4JZ7A 3QURA 4F6TB 4I49A 3LL9A 2BRXA 3C1NA 1OHAA 2CDQA 4NDPA 3WWNA 2J5VA 2X2WA 3C1MA 1GSJA 3AB4A 2R98A 2BNDA 3S6GA 3T7BA 2WXBA 2J0XA 2RD5A 2IJ9A 4NDRB 2R8VA 4F6TA 3AB2A 3WWMA 1OHBA 3K52A 2J4KA 2VA1A 1E19A 3ZZGA 1YBDA 3K56A 3K4OA
chains in the Genus database with same CATH topology
3LKKA 3L86A 4AB7A 2BNEA 1B7BA 3QUOA 2AP9A 2BMUA 4OLCA 1GS5A 4NDRA 2J0WA 2WE4A 1OH9A 4Q1TA 2HMFA 2A1FA 3U6UA 2J4JA 3NWYA 4USJA 2BUFA 3B8GA 3AAWA 4JZ8A 3LL5A 3TVIA 2BTYA 3D40A 2V4YA 4NDOB 1Z9DA 4KZTA 4AXSA 3ZZIA 2J5TA 4NDQB 4A7XA 3KZFA 3EK6A 3QVHA 2JJXA 3D2MA 2V5HA 2E9YA 2J4LA 4NDOA 3S6KA 4NDQA 3QUNA 2OGXB 3EK5A 3C20A 3D41A 3K4YA 2BRIA 4NDPB 2AKOA 2WE5A 4A7WA 2BNFA 2JI5A 3L76A 2W21A 3ZZHA 3S6HA 2JJ4A 3ZZFA 3D2PA 3QVFA 2OGXA 4JZ9A 4JZ7A 3QURA 4F6TB 4I49A 3LL9A 2BRXA 3C1NA 1OHAA 2CDQA 4NDPA 3WWNA 2J5VA 2X2WA 3C1MA 1GSJA 3AB4A 2R98A 2BNDA 3S6GA 3T7BA 2WXBA 2J0XA 2RD5A 2IJ9A 4NDRB 2R8VA 4F6TA 3AB2A 3WWMA 1OHBA 3K52A 2J4KA 2VA1A 1E19A 3ZZGA 1YBDA 3K56A 3K4OA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LKK A;  3L86 A;  4AB7 A;  2BNE A;  1B7B A;  3QUO A;  2AP9 A;  2BMU A;  4OLC A;  1GS5 A;  4NDR A;  2J0W A;  2WE4 A;  1OH9 A;  4Q1T A;  2HMF A;  2A1F A;  3U6U A;  2J4J A;  3NWY A;  4USJ A;  2BUF A;  3B8G A;  3AAW A;  4JZ8 A;  3LL5 A;  3TVI A;  2BTY A;  3D40 A;  2V4Y A;  4NDO B;  1Z9D A;  4KZT A;  4AXS A;  3ZZI A;  2J5T A;  4NDQ B;  4A7X A;  3KZF A;  3EK6 A;  3QVH A;  2JJX A;  3D2M A;  2V5H A;  2E9Y A;  2J4L A;  4NDO A;  3S6K A;  4NDQ A;  3QUN A;  2OGX B;  3EK5 A;  3C20 A;  3D41 A;  3K4Y A;  2BRI A;  4NDP B;  2AKO A;  2WE5 A;  4A7W A;  2BNF A;  2JI5 A;  3L76 A;  2W21 A;  3ZZH A;  3S6H A;  2JJ4 A;  3ZZF A;  3D2P A;  3QVF A;  2OGX A;  4JZ9 A;  4JZ7 A;  3QUR A;  4F6T B;  4I49 A;  3LL9 A;  2BRX A;  3C1N A;  1OHA A;  2CDQ A;  4NDP A;  3WWN A;  2J5V A;  2X2W A;  3C1M A;  1GSJ A;  3AB4 A;  2R98 A;  2BND A;  3S6G A;  3T7B A;  2WXB A;  2J0X A;  2RD5 A;  2IJ9 A;  4NDR B;  2R8V A;  4F6T A;  3AB2 A;  3WWM A;  1OHB A;  3K52 A;  2J4K A;  2VA1 A;  1E19 A;  3ZZG A;  1YBD A;  3K56 A;  3K4O A; 
#chains in the Genus database with same CATH topology
 3LKK A;  3L86 A;  4AB7 A;  2BNE A;  1B7B A;  3QUO A;  2AP9 A;  2BMU A;  4OLC A;  1GS5 A;  4NDR A;  2J0W A;  2WE4 A;  1OH9 A;  4Q1T A;  2HMF A;  2A1F A;  3U6U A;  2J4J A;  3NWY A;  4USJ A;  2BUF A;  3B8G A;  3AAW A;  4JZ8 A;  3LL5 A;  3TVI A;  2BTY A;  3D40 A;  2V4Y A;  4NDO B;  1Z9D A;  4KZT A;  4AXS A;  3ZZI A;  2J5T A;  4NDQ B;  4A7X A;  3KZF A;  3EK6 A;  3QVH A;  2JJX A;  3D2M A;  2V5H A;  2E9Y A;  2J4L A;  4NDO A;  3S6K A;  4NDQ A;  3QUN A;  2OGX B;  3EK5 A;  3C20 A;  3D41 A;  3K4Y A;  2BRI A;  4NDP B;  2AKO A;  2WE5 A;  4A7W A;  2BNF A;  2JI5 A;  3L76 A;  2W21 A;  3ZZH A;  3S6H A;  2JJ4 A;  3ZZF A;  3D2P A;  3QVF A;  2OGX A;  4JZ9 A;  4JZ7 A;  3QUR A;  4F6T B;  4I49 A;  3LL9 A;  2BRX A;  3C1N A;  1OHA A;  2CDQ A;  4NDP A;  3WWN A;  2J5V A;  2X2W A;  3C1M A;  1GSJ A;  3AB4 A;  2R98 A;  2BND A;  3S6G A;  3T7B A;  2WXB A;  2J0X A;  2RD5 A;  2IJ9 A;  4NDR B;  2R8V A;  4F6T A;  3AB2 A;  3WWM A;  1OHB A;  3K52 A;  2J4K A;  2VA1 A;  1E19 A;  3ZZG A;  1YBD A;  3K56 A;  3K4O A; 
#chains in the Genus database with same CATH homology
 3LKK A;  3L86 A;  4AB7 A;  2BNE A;  1B7B A;  3QUO A;  2AP9 A;  2BMU A;  4OLC A;  1GS5 A;  4NDR A;  2J0W A;  2WE4 A;  1OH9 A;  4Q1T A;  2HMF A;  2A1F A;  3U6U A;  2J4J A;  3NWY A;  4USJ A;  2BUF A;  3B8G A;  3AAW A;  4JZ8 A;  3LL5 A;  3TVI A;  2BTY A;  3D40 A;  2V4Y A;  4NDO B;  1Z9D A;  4KZT A;  4AXS A;  3ZZI A;  2J5T A;  4NDQ B;  4A7X A;  3KZF A;  3EK6 A;  3QVH A;  2JJX A;  3D2M A;  2V5H A;  2E9Y A;  2J4L A;  4NDO A;  3S6K A;  4NDQ A;  3QUN A;  2OGX B;  3EK5 A;  3C20 A;  3D41 A;  3K4Y A;  2BRI A;  4NDP B;  2AKO A;  2WE5 A;  4A7W A;  2BNF A;  2JI5 A;  3L76 A;  2W21 A;  3ZZH A;  3S6H A;  2JJ4 A;  3ZZF A;  3D2P A;  3QVF A;  2OGX A;  4JZ9 A;  4JZ7 A;  3QUR A;  4F6T B;  4I49 A;  3LL9 A;  2BRX A;  3C1N A;  1OHA A;  2CDQ A;  4NDP A;  3WWN A;  2J5V A;  2X2W A;  3C1M A;  1GSJ A;  3AB4 A;  2R98 A;  2BND A;  3S6G A;  3T7B A;  2WXB A;  2J0X A;  2RD5 A;  2IJ9 A;  4NDR B;  2R8V A;  4F6T A;  3AB2 A;  3WWM A;  1OHB A;  3K52 A;  2J4K A;  2VA1 A;  1E19 A;  3ZZG A;  1YBD A;  3K56 A;  3K4O A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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