2J4KA

Crystal structure of uridylate kinase from sulfolobus solfataricus in complex with ump to 2.2 angstrom resolution
Total Genus 68
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
68
sequence length
226
structure length
207
Chain Sequence
b'MNIILKISGKFFDEDNVDNLIVLRQSIKELADNGFRVGIVTGGGSTARRYIKLAREIGIGEAYLDLLGIWASRLNAYLVMFSLQDLAYMHVPQSLEEFIQDWSHGKVVVTGGFQPGQSTAAVAALVAEASSSKTLVVATNVDGVYEKDPRIYADVKLIPHLTTQDLRKILLLDPLAIKIVERSKIRVIVMNYRKLNRIEVSSIIEPV'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords URIDYLATE KINASE
publication title Structural and Enzymatic Investigation of the Sulfolobus Solfataricus Uridylate Kinase Shows Competitive Utp Inhibition and the Lack of GTP Stimulation
pubmed doi rcsb
source organism Sulfolobus solfataricus
molecule tags Transferase
total genus 68
structure length 207
sequence length 226
chains with identical sequence B, C, D, E, F
ec nomenclature ec 2.7.4.22: UMP kinase.
pdb deposition date 2006-09-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 2j4kA00
2BRXA 2BTYA 3K52A 3WWMA 1OHBA 4A7XA 2RD5A 4AXSA 3D2MA 1OH9A 3D40A 2R8VA 4NDQA 3T7BA 4NDOA 2BNDA 3NWYA 2OGXB 2HMFA 3LKKA 2J5TA 4F6TA 3ZZIA 2AKOA 2JJXA 3S6GA 3K56A 3ZZHA 3B8GA 4A7WA 3D41A 2J4JA 3KZFA 1YBDA 4JZ9A 4AB7A 4NDRB 4NDPA 3EK5A 3TVIA 2WE4A 1GS5A 3L76A 2J4LA 3EK6A 2AP9A 4Q1TA 2JI5A 3QUOA 4KZTA 2J0XA 3QURA 2V5HA 2WE5A 3LL9A 3K4YA 2W21A 2CDQA 4NDQB 2J0WA 4NDOB 2BUFA 2BMUA 3ZZFA 2WXBA 4I49A 2VA1A 2V4YA 3AB2A 4F6TB 3K4OA 3QVFA 2OGXA 2R98A 3U6UA 3QUNA 3L86A 3D2PA 2X2WA 2BNFA 2BRIA 1Z9DA 2JJ4A 2BNEA 3S6KA 3WWNA 3AB4A 4OLCA 3C1MA 4NDPB 3S6HA 4JZ8A 3C20A 2J5VA 1GSJA 4NDRA 2E9YA 3AAWA 3LL5A 2IJ9A 3C1NA 4JZ7A 1OHAA 1E19A 2A1FA 4USJA 2J4KA 3QVHA 1B7BA 3ZZGA
chains in the Genus database with same CATH superfamily
2BRXA 2BTYA 3K52A 3WWMA 1OHBA 4A7XA 2RD5A 4AXSA 3D2MA 1OH9A 3D40A 2R8VA 4NDQA 3T7BA 4NDOA 2BNDA 3NWYA 2OGXB 2HMFA 3LKKA 2J5TA 4F6TA 3ZZIA 2AKOA 2JJXA 3S6GA 3K56A 3ZZHA 3B8GA 4A7WA 3D41A 2J4JA 3KZFA 1YBDA 4JZ9A 4AB7A 4NDRB 4NDPA 3EK5A 3TVIA 2WE4A 1GS5A 3L76A 2J4LA 3EK6A 2AP9A 4Q1TA 2JI5A 3QUOA 4KZTA 2J0XA 3QURA 2V5HA 2WE5A 3LL9A 3K4YA 2W21A 2CDQA 4NDQB 2J0WA 4NDOB 2BUFA 2BMUA 3ZZFA 2WXBA 4I49A 2VA1A 2V4YA 3AB2A 4F6TB 3K4OA 3QVFA 2OGXA 2R98A 3U6UA 3QUNA 3L86A 3D2PA 2X2WA 2BNFA 2BRIA 1Z9DA 2JJ4A 2BNEA 3S6KA 3WWNA 3AB4A 4OLCA 3C1MA 4NDPB 3S6HA 4JZ8A 3C20A 2J5VA 1GSJA 4NDRA 2E9YA 3AAWA 3LL5A 2IJ9A 3C1NA 4JZ7A 1OHAA 1E19A 2A1FA 4USJA 2J4KA 3QVHA 1B7BA 3ZZGA
chains in the Genus database with same CATH topology
2BRXA 2BTYA 3K52A 3WWMA 1OHBA 4A7XA 2RD5A 4AXSA 3D2MA 1OH9A 3D40A 2R8VA 4NDQA 3T7BA 4NDOA 2BNDA 3NWYA 2OGXB 2HMFA 3LKKA 2J5TA 4F6TA 3ZZIA 2AKOA 2JJXA 3S6GA 3K56A 3ZZHA 3B8GA 4A7WA 3D41A 2J4JA 3KZFA 1YBDA 4JZ9A 4AB7A 4NDRB 4NDPA 3EK5A 3TVIA 2WE4A 1GS5A 3L76A 2J4LA 3EK6A 2AP9A 4Q1TA 2JI5A 3QUOA 4KZTA 2J0XA 3QURA 2V5HA 2WE5A 3LL9A 3K4YA 2W21A 2CDQA 4NDQB 2J0WA 4NDOB 2BUFA 2BMUA 3ZZFA 2WXBA 4I49A 2VA1A 2V4YA 3AB2A 4F6TB 3K4OA 3QVFA 2OGXA 2R98A 3U6UA 3QUNA 3L86A 3D2PA 2X2WA 2BNFA 2BRIA 1Z9DA 2JJ4A 2BNEA 3S6KA 3WWNA 3AB4A 4OLCA 3C1MA 4NDPB 3S6HA 4JZ8A 3C20A 2J5VA 1GSJA 4NDRA 2E9YA 3AAWA 3LL5A 2IJ9A 3C1NA 4JZ7A 1OHAA 1E19A 2A1FA 4USJA 2J4KA 3QVHA 1B7BA 3ZZGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BRX A;  2BTY A;  3K52 A;  3WWM A;  1OHB A;  4A7X A;  2RD5 A;  4AXS A;  3D2M A;  1OH9 A;  3D40 A;  2R8V A;  4NDQ A;  3T7B A;  4NDO A;  2BND A;  3NWY A;  2OGX B;  2HMF A;  3LKK A;  2J5T A;  4F6T A;  3ZZI A;  2AKO A;  2JJX A;  3S6G A;  3K56 A;  3ZZH A;  3B8G A;  4A7W A;  3D41 A;  2J4J A;  3KZF A;  1YBD A;  4JZ9 A;  4AB7 A;  4NDR B;  4NDP A;  3EK5 A;  3TVI A;  2WE4 A;  1GS5 A;  3L76 A;  2J4L A;  3EK6 A;  2AP9 A;  4Q1T A;  2JI5 A;  3QUO A;  4KZT A;  2J0X A;  3QUR A;  2V5H A;  2WE5 A;  3LL9 A;  3K4Y A;  2W21 A;  2CDQ A;  4NDQ B;  2J0W A;  4NDO B;  2BUF A;  2BMU A;  3ZZF A;  2WXB A;  4I49 A;  2VA1 A;  2V4Y A;  3AB2 A;  4F6T B;  3K4O A;  3QVF A;  2OGX A;  2R98 A;  3U6U A;  3QUN A;  3L86 A;  3D2P A;  2X2W A;  2BNF A;  2BRI A;  1Z9D A;  2JJ4 A;  2BNE A;  3S6K A;  3WWN A;  3AB4 A;  4OLC A;  3C1M A;  4NDP B;  3S6H A;  4JZ8 A;  3C20 A;  2J5V A;  1GSJ A;  4NDR A;  2E9Y A;  3AAW A;  3LL5 A;  2IJ9 A;  3C1N A;  4JZ7 A;  1OHA A;  1E19 A;  2A1F A;  4USJ A;  2J4K A;  3QVH A;  1B7B A;  3ZZG A; 
#chains in the Genus database with same CATH topology
 2BRX A;  2BTY A;  3K52 A;  3WWM A;  1OHB A;  4A7X A;  2RD5 A;  4AXS A;  3D2M A;  1OH9 A;  3D40 A;  2R8V A;  4NDQ A;  3T7B A;  4NDO A;  2BND A;  3NWY A;  2OGX B;  2HMF A;  3LKK A;  2J5T A;  4F6T A;  3ZZI A;  2AKO A;  2JJX A;  3S6G A;  3K56 A;  3ZZH A;  3B8G A;  4A7W A;  3D41 A;  2J4J A;  3KZF A;  1YBD A;  4JZ9 A;  4AB7 A;  4NDR B;  4NDP A;  3EK5 A;  3TVI A;  2WE4 A;  1GS5 A;  3L76 A;  2J4L A;  3EK6 A;  2AP9 A;  4Q1T A;  2JI5 A;  3QUO A;  4KZT A;  2J0X A;  3QUR A;  2V5H A;  2WE5 A;  3LL9 A;  3K4Y A;  2W21 A;  2CDQ A;  4NDQ B;  2J0W A;  4NDO B;  2BUF A;  2BMU A;  3ZZF A;  2WXB A;  4I49 A;  2VA1 A;  2V4Y A;  3AB2 A;  4F6T B;  3K4O A;  3QVF A;  2OGX A;  2R98 A;  3U6U A;  3QUN A;  3L86 A;  3D2P A;  2X2W A;  2BNF A;  2BRI A;  1Z9D A;  2JJ4 A;  2BNE A;  3S6K A;  3WWN A;  3AB4 A;  4OLC A;  3C1M A;  4NDP B;  3S6H A;  4JZ8 A;  3C20 A;  2J5V A;  1GSJ A;  4NDR A;  2E9Y A;  3AAW A;  3LL5 A;  2IJ9 A;  3C1N A;  4JZ7 A;  1OHA A;  1E19 A;  2A1F A;  4USJ A;  2J4K A;  3QVH A;  1B7B A;  3ZZG A; 
#chains in the Genus database with same CATH homology
 2BRX A;  2BTY A;  3K52 A;  3WWM A;  1OHB A;  4A7X A;  2RD5 A;  4AXS A;  3D2M A;  1OH9 A;  3D40 A;  2R8V A;  4NDQ A;  3T7B A;  4NDO A;  2BND A;  3NWY A;  2OGX B;  2HMF A;  3LKK A;  2J5T A;  4F6T A;  3ZZI A;  2AKO A;  2JJX A;  3S6G A;  3K56 A;  3ZZH A;  3B8G A;  4A7W A;  3D41 A;  2J4J A;  3KZF A;  1YBD A;  4JZ9 A;  4AB7 A;  4NDR B;  4NDP A;  3EK5 A;  3TVI A;  2WE4 A;  1GS5 A;  3L76 A;  2J4L A;  3EK6 A;  2AP9 A;  4Q1T A;  2JI5 A;  3QUO A;  4KZT A;  2J0X A;  3QUR A;  2V5H A;  2WE5 A;  3LL9 A;  3K4Y A;  2W21 A;  2CDQ A;  4NDQ B;  2J0W A;  4NDO B;  2BUF A;  2BMU A;  3ZZF A;  2WXB A;  4I49 A;  2VA1 A;  2V4Y A;  3AB2 A;  4F6T B;  3K4O A;  3QVF A;  2OGX A;  2R98 A;  3U6U A;  3QUN A;  3L86 A;  3D2P A;  2X2W A;  2BNF A;  2BRI A;  1Z9D A;  2JJ4 A;  2BNE A;  3S6K A;  3WWN A;  3AB4 A;  4OLC A;  3C1M A;  4NDP B;  3S6H A;  4JZ8 A;  3C20 A;  2J5V A;  1GSJ A;  4NDR A;  2E9Y A;  3AAW A;  3LL5 A;  2IJ9 A;  3C1N A;  4JZ7 A;  1OHA A;  1E19 A;  2A1F A;  4USJ A;  2J4K A;  3QVH A;  1B7B A;  3ZZG A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...