2BRXA

Ump kinase from pyrococcus furiosus without ligands
Total Genus 77
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
sequence length
226
structure length
218
Chain Sequence
HMRIVFDIGGSVLVPENPDIDFIKEIAYQLTKVSEDHEVAVVVGGGKLARKYIEVAEKFNSSETFKDFIGIQITRANAMLLIAALREKAYPVVVEDFWEAWKAVQLKKIPVMGGTHPGHTTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEIVGKSVIDPLAAKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTIEP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
source organism Pyrococcus furiosus
publication title The Crystal Structure of Pyrococcus Furiosus Ump Kinase Provides Insight Into Catalysis and Regulation in Microbial Pyrimidine Nucleotide Biosynthesis.
pubmed doi rcsb
molecule keywords URIDYLATE KINASE
total genus 77
structure length 218
sequence length 226
chains with identical sequence B
ec nomenclature ec 2.7.4.22: UMP kinase.
pdb deposition date 2005-05-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 2brxA00
4AB7A 2J5VA 3AB2A 2AKOA 3D2MA 4JZ8A 2J4JA 3QUOA 3U6UA 2OGXA 3QUNA 2V4YA 2BRIA 2BTYA 2AP9A 3QVFA 2BNDA 3C1NA 2OGXB 3LL9A 4NDQB 2VA1A 4JZ7A 2J0XA 3LL5A 2J4KA 3L76A 3ZZIA 3S6KA 2W21A 3C1MA 2BUFA 3B8GA 4A7WA 4NDPA 2V5HA 2X2WA 3K52A 4NDQA 2JJ4A 3K56A 2E9YA 1Z9DA 1OH9A 3C20A 1GSJA 2IJ9A 2J5TA 4KZTA 2BNFA 3AAWA 2J0WA 4NDPB 3ZZHA 3WWMA 4USJA 2BRXA 2BNEA 2WE4A 4AXSA 4JZ9A 4NDRB 3D2PA 4A7XA 2JI5A 3LKKA 3ZZGA 3WWNA 1E19A 3AB4A 2BMUA 3NWYA 4F6TA 3EK5A 4NDRA 4Q1TA 1YBDA 2R98A 4I49A 3ZZFA 1OHBA 3S6GA 2J4LA 3D41A 3QVHA 3T7BA 4F6TB 2R8VA 3L86A 3KZFA 1GS5A 3D40A 4NDOA 1B7BA 4OLCA 3K4YA 2JJXA 2CDQA 2HMFA 3QURA 3TVIA 3S6HA 1OHAA 2WE5A 3EK6A 2A1FA 2WXBA 4NDOB 3K4OA 2RD5A
chains in the Genus database with same CATH superfamily
4AB7A 2J5VA 3AB2A 2AKOA 3D2MA 4JZ8A 2J4JA 3QUOA 3U6UA 2OGXA 3QUNA 2V4YA 2BRIA 2BTYA 2AP9A 3QVFA 2BNDA 3C1NA 2OGXB 3LL9A 4NDQB 2VA1A 4JZ7A 2J0XA 3LL5A 2J4KA 3L76A 3ZZIA 3S6KA 2W21A 3C1MA 2BUFA 3B8GA 4A7WA 4NDPA 2V5HA 2X2WA 3K52A 4NDQA 2JJ4A 3K56A 2E9YA 1Z9DA 1OH9A 3C20A 1GSJA 2IJ9A 2J5TA 4KZTA 2BNFA 3AAWA 2J0WA 4NDPB 3ZZHA 3WWMA 4USJA 2BRXA 2BNEA 2WE4A 4AXSA 4JZ9A 4NDRB 3D2PA 4A7XA 2JI5A 3LKKA 3ZZGA 3WWNA 1E19A 3AB4A 2BMUA 3NWYA 4F6TA 3EK5A 4NDRA 4Q1TA 1YBDA 2R98A 4I49A 3ZZFA 1OHBA 3S6GA 2J4LA 3D41A 3QVHA 3T7BA 4F6TB 2R8VA 3L86A 3KZFA 1GS5A 3D40A 4NDOA 1B7BA 4OLCA 3K4YA 2JJXA 2CDQA 2HMFA 3QURA 3TVIA 3S6HA 1OHAA 2WE5A 3EK6A 2A1FA 2WXBA 4NDOB 3K4OA 2RD5A
chains in the Genus database with same CATH topology
4AB7A 2J5VA 3AB2A 2AKOA 3D2MA 4JZ8A 2J4JA 3QUOA 3U6UA 2OGXA 3QUNA 2V4YA 2BRIA 2BTYA 2AP9A 3QVFA 2BNDA 3C1NA 2OGXB 3LL9A 4NDQB 2VA1A 4JZ7A 2J0XA 3LL5A 2J4KA 3L76A 3ZZIA 3S6KA 2W21A 3C1MA 2BUFA 3B8GA 4A7WA 4NDPA 2V5HA 2X2WA 3K52A 4NDQA 2JJ4A 3K56A 2E9YA 1Z9DA 1OH9A 3C20A 1GSJA 2IJ9A 2J5TA 4KZTA 2BNFA 3AAWA 2J0WA 4NDPB 3ZZHA 3WWMA 4USJA 2BRXA 2BNEA 2WE4A 4AXSA 4JZ9A 4NDRB 3D2PA 4A7XA 2JI5A 3LKKA 3ZZGA 3WWNA 1E19A 3AB4A 2BMUA 3NWYA 4F6TA 3EK5A 4NDRA 4Q1TA 1YBDA 2R98A 4I49A 3ZZFA 1OHBA 3S6GA 2J4LA 3D41A 3QVHA 3T7BA 4F6TB 2R8VA 3L86A 3KZFA 1GS5A 3D40A 4NDOA 1B7BA 4OLCA 3K4YA 2JJXA 2CDQA 2HMFA 3QURA 3TVIA 3S6HA 1OHAA 2WE5A 3EK6A 2A1FA 2WXBA 4NDOB 3K4OA 2RD5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4AB7 A;  2J5V A;  3AB2 A;  2AKO A;  3D2M A;  4JZ8 A;  2J4J A;  3QUO A;  3U6U A;  2OGX A;  3QUN A;  2V4Y A;  2BRI A;  2BTY A;  2AP9 A;  3QVF A;  2BND A;  3C1N A;  2OGX B;  3LL9 A;  4NDQ B;  2VA1 A;  4JZ7 A;  2J0X A;  3LL5 A;  2J4K A;  3L76 A;  3ZZI A;  3S6K A;  2W21 A;  3C1M A;  2BUF A;  3B8G A;  4A7W A;  4NDP A;  2V5H A;  2X2W A;  3K52 A;  4NDQ A;  2JJ4 A;  3K56 A;  2E9Y A;  1Z9D A;  1OH9 A;  3C20 A;  1GSJ A;  2IJ9 A;  2J5T A;  4KZT A;  2BNF A;  3AAW A;  2J0W A;  4NDP B;  3ZZH A;  3WWM A;  4USJ A;  2BRX A;  2BNE A;  2WE4 A;  4AXS A;  4JZ9 A;  4NDR B;  3D2P A;  4A7X A;  2JI5 A;  3LKK A;  3ZZG A;  3WWN A;  1E19 A;  3AB4 A;  2BMU A;  3NWY A;  4F6T A;  3EK5 A;  4NDR A;  4Q1T A;  1YBD A;  2R98 A;  4I49 A;  3ZZF A;  1OHB A;  3S6G A;  2J4L A;  3D41 A;  3QVH A;  3T7B A;  4F6T B;  2R8V A;  3L86 A;  3KZF A;  1GS5 A;  3D40 A;  4NDO A;  1B7B A;  4OLC A;  3K4Y A;  2JJX A;  2CDQ A;  2HMF A;  3QUR A;  3TVI A;  3S6H A;  1OHA A;  2WE5 A;  3EK6 A;  2A1F A;  2WXB A;  4NDO B;  3K4O A;  2RD5 A; 
#chains in the Genus database with same CATH topology
 4AB7 A;  2J5V A;  3AB2 A;  2AKO A;  3D2M A;  4JZ8 A;  2J4J A;  3QUO A;  3U6U A;  2OGX A;  3QUN A;  2V4Y A;  2BRI A;  2BTY A;  2AP9 A;  3QVF A;  2BND A;  3C1N A;  2OGX B;  3LL9 A;  4NDQ B;  2VA1 A;  4JZ7 A;  2J0X A;  3LL5 A;  2J4K A;  3L76 A;  3ZZI A;  3S6K A;  2W21 A;  3C1M A;  2BUF A;  3B8G A;  4A7W A;  4NDP A;  2V5H A;  2X2W A;  3K52 A;  4NDQ A;  2JJ4 A;  3K56 A;  2E9Y A;  1Z9D A;  1OH9 A;  3C20 A;  1GSJ A;  2IJ9 A;  2J5T A;  4KZT A;  2BNF A;  3AAW A;  2J0W A;  4NDP B;  3ZZH A;  3WWM A;  4USJ A;  2BRX A;  2BNE A;  2WE4 A;  4AXS A;  4JZ9 A;  4NDR B;  3D2P A;  4A7X A;  2JI5 A;  3LKK A;  3ZZG A;  3WWN A;  1E19 A;  3AB4 A;  2BMU A;  3NWY A;  4F6T A;  3EK5 A;  4NDR A;  4Q1T A;  1YBD A;  2R98 A;  4I49 A;  3ZZF A;  1OHB A;  3S6G A;  2J4L A;  3D41 A;  3QVH A;  3T7B A;  4F6T B;  2R8V A;  3L86 A;  3KZF A;  1GS5 A;  3D40 A;  4NDO A;  1B7B A;  4OLC A;  3K4Y A;  2JJX A;  2CDQ A;  2HMF A;  3QUR A;  3TVI A;  3S6H A;  1OHA A;  2WE5 A;  3EK6 A;  2A1F A;  2WXB A;  4NDO B;  3K4O A;  2RD5 A; 
#chains in the Genus database with same CATH homology
 4AB7 A;  2J5V A;  3AB2 A;  2AKO A;  3D2M A;  4JZ8 A;  2J4J A;  3QUO A;  3U6U A;  2OGX A;  3QUN A;  2V4Y A;  2BRI A;  2BTY A;  2AP9 A;  3QVF A;  2BND A;  3C1N A;  2OGX B;  3LL9 A;  4NDQ B;  2VA1 A;  4JZ7 A;  2J0X A;  3LL5 A;  2J4K A;  3L76 A;  3ZZI A;  3S6K A;  2W21 A;  3C1M A;  2BUF A;  3B8G A;  4A7W A;  4NDP A;  2V5H A;  2X2W A;  3K52 A;  4NDQ A;  2JJ4 A;  3K56 A;  2E9Y A;  1Z9D A;  1OH9 A;  3C20 A;  1GSJ A;  2IJ9 A;  2J5T A;  4KZT A;  2BNF A;  3AAW A;  2J0W A;  4NDP B;  3ZZH A;  3WWM A;  4USJ A;  2BRX A;  2BNE A;  2WE4 A;  4AXS A;  4JZ9 A;  4NDR B;  3D2P A;  4A7X A;  2JI5 A;  3LKK A;  3ZZG A;  3WWN A;  1E19 A;  3AB4 A;  2BMU A;  3NWY A;  4F6T A;  3EK5 A;  4NDR A;  4Q1T A;  1YBD A;  2R98 A;  4I49 A;  3ZZF A;  1OHB A;  3S6G A;  2J4L A;  3D41 A;  3QVH A;  3T7B A;  4F6T B;  2R8V A;  3L86 A;  3KZF A;  1GS5 A;  3D40 A;  4NDO A;  1B7B A;  4OLC A;  3K4Y A;  2JJX A;  2CDQ A;  2HMF A;  3QUR A;  3TVI A;  3S6H A;  1OHA A;  2WE5 A;  3EK6 A;  2A1F A;  2WXB A;  4NDO B;  3K4O A;  2RD5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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