2IJ9A

Crystal structure of uridylate kinase from archaeoglobus fulgidus
Total Genus 72
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
72
sequence length
219
structure length
214
Chain Sequence
MKVVLSLGGSVLSNESEKIREFAKTIESVAQQNQVFVVVGGGKLAREYIKSARELGASETFCDYIGIAATRLNAMLLISAIPSAAKKVPVDFMEAEELSKLYRVVVMGGTFPGHTTDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEIVSRGTNVVIDLLAAKIIERSKIKTYVILGTPENIMKAVKGEAVGTVIA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of Uridylate Kinase from Archaeoglobus Fulgidus
rcsb
source organism Archaeoglobus fulgidus
molecule tags Transferase
molecule keywords Uridylate kinase
total genus 72
structure length 214
sequence length 219
chains with identical sequence B
ec nomenclature ec 2.7.4.22: UMP kinase.
pdb deposition date 2006-09-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 2ij9A00
2X2WA 1GS5A 2CDQA 2BMUA 3S6GA 2BNDA 3L76A 3KZFA 2BRIA 3LL5A 2V4YA 3D41A 3S6HA 4NDRA 3TVIA 2WE4A 3C1NA 3LKKA 1OHBA 1B7BA 2R98A 1YBDA 3QURA 3T7BA 4NDPA 2BUFA 3D40A 2J0WA 3AB2A 4F6TB 3QUNA 3C1MA 3L86A 2JI5A 2J4JA 2J5VA 2IJ9A 2BRXA 3ZZHA 2JJ4A 2RD5A 3D2PA 2WXBA 4NDRB 3B8GA 3WWMA 1OH9A 4F6TA 2AP9A 2W21A 3K4YA 4NDOA 3EK5A 2V5HA 3S6KA 2HMFA 3QUOA 2WE5A 2OGXA 4AB7A 3EK6A 4JZ8A 4NDQA 2E9YA 4JZ7A 2J4LA 4Q1TA 4I49A 2R8VA 2BNEA 4KZTA 1OHAA 3C20A 2J4KA 3QVHA 3ZZFA 3LL9A 3U6UA 4NDQB 4NDOB 1Z9DA 3D2MA 3NWYA 4USJA 4AXSA 2A1FA 3AAWA 3K4OA 4JZ9A 2BNFA 2VA1A 3AB4A 3QVFA 3K56A 4OLCA 3WWNA 4A7WA 2JJXA 2BTYA 3ZZIA 1GSJA 1E19A 2OGXB 2AKOA 2J0XA 4NDPB 3K52A 4A7XA 2J5TA 3ZZGA
chains in the Genus database with same CATH superfamily
2X2WA 1GS5A 2CDQA 2BMUA 3S6GA 2BNDA 3L76A 3KZFA 2BRIA 3LL5A 2V4YA 3D41A 3S6HA 4NDRA 3TVIA 2WE4A 3C1NA 3LKKA 1OHBA 1B7BA 2R98A 1YBDA 3QURA 3T7BA 4NDPA 2BUFA 3D40A 2J0WA 3AB2A 4F6TB 3QUNA 3C1MA 3L86A 2JI5A 2J4JA 2J5VA 2IJ9A 2BRXA 3ZZHA 2JJ4A 2RD5A 3D2PA 2WXBA 4NDRB 3B8GA 3WWMA 1OH9A 4F6TA 2AP9A 2W21A 3K4YA 4NDOA 3EK5A 2V5HA 3S6KA 2HMFA 3QUOA 2WE5A 2OGXA 4AB7A 3EK6A 4JZ8A 4NDQA 2E9YA 4JZ7A 2J4LA 4Q1TA 4I49A 2R8VA 2BNEA 4KZTA 1OHAA 3C20A 2J4KA 3QVHA 3ZZFA 3LL9A 3U6UA 4NDQB 4NDOB 1Z9DA 3D2MA 3NWYA 4USJA 4AXSA 2A1FA 3AAWA 3K4OA 4JZ9A 2BNFA 2VA1A 3AB4A 3QVFA 3K56A 4OLCA 3WWNA 4A7WA 2JJXA 2BTYA 3ZZIA 1GSJA 1E19A 2OGXB 2AKOA 2J0XA 4NDPB 3K52A 4A7XA 2J5TA 3ZZGA
chains in the Genus database with same CATH topology
2X2WA 1GS5A 2CDQA 2BMUA 3S6GA 2BNDA 3L76A 3KZFA 2BRIA 3LL5A 2V4YA 3D41A 3S6HA 4NDRA 3TVIA 2WE4A 3C1NA 3LKKA 1OHBA 1B7BA 2R98A 1YBDA 3QURA 3T7BA 4NDPA 2BUFA 3D40A 2J0WA 3AB2A 4F6TB 3QUNA 3C1MA 3L86A 2JI5A 2J4JA 2J5VA 2IJ9A 2BRXA 3ZZHA 2JJ4A 2RD5A 3D2PA 2WXBA 4NDRB 3B8GA 3WWMA 1OH9A 4F6TA 2AP9A 2W21A 3K4YA 4NDOA 3EK5A 2V5HA 3S6KA 2HMFA 3QUOA 2WE5A 2OGXA 4AB7A 3EK6A 4JZ8A 4NDQA 2E9YA 4JZ7A 2J4LA 4Q1TA 4I49A 2R8VA 2BNEA 4KZTA 1OHAA 3C20A 2J4KA 3QVHA 3ZZFA 3LL9A 3U6UA 4NDQB 4NDOB 1Z9DA 3D2MA 3NWYA 4USJA 4AXSA 2A1FA 3AAWA 3K4OA 4JZ9A 2BNFA 2VA1A 3AB4A 3QVFA 3K56A 4OLCA 3WWNA 4A7WA 2JJXA 2BTYA 3ZZIA 1GSJA 1E19A 2OGXB 2AKOA 2J0XA 4NDPB 3K52A 4A7XA 2J5TA 3ZZGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2X2W A;  1GS5 A;  2CDQ A;  2BMU A;  3S6G A;  2BND A;  3L76 A;  3KZF A;  2BRI A;  3LL5 A;  2V4Y A;  3D41 A;  3S6H A;  4NDR A;  3TVI A;  2WE4 A;  3C1N A;  3LKK A;  1OHB A;  1B7B A;  2R98 A;  1YBD A;  3QUR A;  3T7B A;  4NDP A;  2BUF A;  3D40 A;  2J0W A;  3AB2 A;  4F6T B;  3QUN A;  3C1M A;  3L86 A;  2JI5 A;  2J4J A;  2J5V A;  2IJ9 A;  2BRX A;  3ZZH A;  2JJ4 A;  2RD5 A;  3D2P A;  2WXB A;  4NDR B;  3B8G A;  3WWM A;  1OH9 A;  4F6T A;  2AP9 A;  2W21 A;  3K4Y A;  4NDO A;  3EK5 A;  2V5H A;  3S6K A;  2HMF A;  3QUO A;  2WE5 A;  2OGX A;  4AB7 A;  3EK6 A;  4JZ8 A;  4NDQ A;  2E9Y A;  4JZ7 A;  2J4L A;  4Q1T A;  4I49 A;  2R8V A;  2BNE A;  4KZT A;  1OHA A;  3C20 A;  2J4K A;  3QVH A;  3ZZF A;  3LL9 A;  3U6U A;  4NDQ B;  4NDO B;  1Z9D A;  3D2M A;  3NWY A;  4USJ A;  4AXS A;  2A1F A;  3AAW A;  3K4O A;  4JZ9 A;  2BNF A;  2VA1 A;  3AB4 A;  3QVF A;  3K56 A;  4OLC A;  3WWN A;  4A7W A;  2JJX A;  2BTY A;  3ZZI A;  1GSJ A;  1E19 A;  2OGX B;  2AKO A;  2J0X A;  4NDP B;  3K52 A;  4A7X A;  2J5T A;  3ZZG A; 
#chains in the Genus database with same CATH topology
 2X2W A;  1GS5 A;  2CDQ A;  2BMU A;  3S6G A;  2BND A;  3L76 A;  3KZF A;  2BRI A;  3LL5 A;  2V4Y A;  3D41 A;  3S6H A;  4NDR A;  3TVI A;  2WE4 A;  3C1N A;  3LKK A;  1OHB A;  1B7B A;  2R98 A;  1YBD A;  3QUR A;  3T7B A;  4NDP A;  2BUF A;  3D40 A;  2J0W A;  3AB2 A;  4F6T B;  3QUN A;  3C1M A;  3L86 A;  2JI5 A;  2J4J A;  2J5V A;  2IJ9 A;  2BRX A;  3ZZH A;  2JJ4 A;  2RD5 A;  3D2P A;  2WXB A;  4NDR B;  3B8G A;  3WWM A;  1OH9 A;  4F6T A;  2AP9 A;  2W21 A;  3K4Y A;  4NDO A;  3EK5 A;  2V5H A;  3S6K A;  2HMF A;  3QUO A;  2WE5 A;  2OGX A;  4AB7 A;  3EK6 A;  4JZ8 A;  4NDQ A;  2E9Y A;  4JZ7 A;  2J4L A;  4Q1T A;  4I49 A;  2R8V A;  2BNE A;  4KZT A;  1OHA A;  3C20 A;  2J4K A;  3QVH A;  3ZZF A;  3LL9 A;  3U6U A;  4NDQ B;  4NDO B;  1Z9D A;  3D2M A;  3NWY A;  4USJ A;  4AXS A;  2A1F A;  3AAW A;  3K4O A;  4JZ9 A;  2BNF A;  2VA1 A;  3AB4 A;  3QVF A;  3K56 A;  4OLC A;  3WWN A;  4A7W A;  2JJX A;  2BTY A;  3ZZI A;  1GSJ A;  1E19 A;  2OGX B;  2AKO A;  2J0X A;  4NDP B;  3K52 A;  4A7X A;  2J5T A;  3ZZG A; 
#chains in the Genus database with same CATH homology
 2X2W A;  1GS5 A;  2CDQ A;  2BMU A;  3S6G A;  2BND A;  3L76 A;  3KZF A;  2BRI A;  3LL5 A;  2V4Y A;  3D41 A;  3S6H A;  4NDR A;  3TVI A;  2WE4 A;  3C1N A;  3LKK A;  1OHB A;  1B7B A;  2R98 A;  1YBD A;  3QUR A;  3T7B A;  4NDP A;  2BUF A;  3D40 A;  2J0W A;  3AB2 A;  4F6T B;  3QUN A;  3C1M A;  3L86 A;  2JI5 A;  2J4J A;  2J5V A;  2IJ9 A;  2BRX A;  3ZZH A;  2JJ4 A;  2RD5 A;  3D2P A;  2WXB A;  4NDR B;  3B8G A;  3WWM A;  1OH9 A;  4F6T A;  2AP9 A;  2W21 A;  3K4Y A;  4NDO A;  3EK5 A;  2V5H A;  3S6K A;  2HMF A;  3QUO A;  2WE5 A;  2OGX A;  4AB7 A;  3EK6 A;  4JZ8 A;  4NDQ A;  2E9Y A;  4JZ7 A;  2J4L A;  4Q1T A;  4I49 A;  2R8V A;  2BNE A;  4KZT A;  1OHA A;  3C20 A;  2J4K A;  3QVH A;  3ZZF A;  3LL9 A;  3U6U A;  4NDQ B;  4NDO B;  1Z9D A;  3D2M A;  3NWY A;  4USJ A;  4AXS A;  2A1F A;  3AAW A;  3K4O A;  4JZ9 A;  2BNF A;  2VA1 A;  3AB4 A;  3QVF A;  3K56 A;  4OLC A;  3WWN A;  4A7W A;  2JJX A;  2BTY A;  3ZZI A;  1GSJ A;  1E19 A;  2OGX B;  2AKO A;  2J0X A;  4NDP B;  3K52 A;  4A7X A;  2J5T A;  3ZZG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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