2IJ9A

Crystal structure of uridylate kinase from archaeoglobus fulgidus
Total Genus 72
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
72
sequence length
219
structure length
214
Chain Sequence
b'MKVVLSLGGSVLSNESEKIREFAKTIESVAQQNQVFVVVGGGKLAREYIKSARELGASETFCDYIGIAATRLNAMLLISAIPSAAKKVPVDFMEAEELSKLYRVVVMGGTFPGHTTDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEIVSRGTNVVIDLLAAKIIERSKIKTYVILGTPENIMKAVKGEAVGTVIA'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords Uridylate kinase
publication title Crystal Structure of Uridylate Kinase from Archaeoglobus Fulgidus
rcsb
source organism Archaeoglobus fulgidus
molecule tags Transferase
total genus 72
structure length 214
sequence length 219
chains with identical sequence B
ec nomenclature ec 2.7.4.22: UMP kinase.
pdb deposition date 2006-09-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 2ij9A00
3QUOA 4OLCA 2WE5A 2W21A 3LL9A 2V4YA 4USJA 2BNDA 2R98A 1OHBA 3C1MA 3S6HA 3S6KA 3LKKA 3EK5A 3QURA 2J4KA 1GS5A 1B7BA 2WXBA 4I49A 1E19A 3U6UA 3QVHA 2BUFA 2WE4A 2BRIA 2J0WA 2BRXA 3QVFA 2OGXB 3D2PA 4NDQA 4NDRB 4JZ7A 4KZTA 3D41A 2JJ4A 2CDQA 4F6TB 1OH9A 3AAWA 2JI5A 4NDOA 4A7XA 2BNFA 3S6GA 3L86A 4NDQB 4NDPB 2R8VA 3K4YA 2HMFA 2J5TA 1OHAA 2V5HA 2J4LA 3EK6A 3ZZHA 2JJXA 2J4JA 1YBDA 3ZZFA 2BTYA 3C20A 2J5VA 4AB7A 3ZZIA 4JZ8A 3TVIA 3C1NA 3AB4A 2VA1A 2AP9A 3LL5A 3NWYA 4A7WA 4NDOB 3D2MA 2AKOA 1GSJA 2BMUA 3QUNA 3K56A 3WWNA 3K52A 3D40A 3B8GA 3K4OA 4AXSA 2OGXA 4NDRA 4Q1TA 2RD5A 3ZZGA 2A1FA 3WWMA 2IJ9A 2J0XA 4JZ9A 3AB2A 4F6TA 1Z9DA 2X2WA 3KZFA 2E9YA 3T7BA 2BNEA 3L76A 4NDPA
chains in the Genus database with same CATH superfamily
3QUOA 4OLCA 2WE5A 2W21A 3LL9A 2V4YA 4USJA 2BNDA 2R98A 1OHBA 3C1MA 3S6HA 3S6KA 3LKKA 3EK5A 3QURA 2J4KA 1GS5A 1B7BA 2WXBA 4I49A 1E19A 3U6UA 3QVHA 2BUFA 2WE4A 2BRIA 2J0WA 2BRXA 3QVFA 2OGXB 3D2PA 4NDQA 4NDRB 4JZ7A 4KZTA 3D41A 2JJ4A 2CDQA 4F6TB 1OH9A 3AAWA 2JI5A 4NDOA 4A7XA 2BNFA 3S6GA 3L86A 4NDQB 4NDPB 2R8VA 3K4YA 2HMFA 2J5TA 1OHAA 2V5HA 2J4LA 3EK6A 3ZZHA 2JJXA 2J4JA 1YBDA 3ZZFA 2BTYA 3C20A 2J5VA 4AB7A 3ZZIA 4JZ8A 3TVIA 3C1NA 3AB4A 2VA1A 2AP9A 3LL5A 3NWYA 4A7WA 4NDOB 3D2MA 2AKOA 1GSJA 2BMUA 3QUNA 3K56A 3WWNA 3K52A 3D40A 3B8GA 3K4OA 4AXSA 2OGXA 4NDRA 4Q1TA 2RD5A 3ZZGA 2A1FA 3WWMA 2IJ9A 2J0XA 4JZ9A 3AB2A 4F6TA 1Z9DA 2X2WA 3KZFA 2E9YA 3T7BA 2BNEA 3L76A 4NDPA
chains in the Genus database with same CATH topology
3QUOA 4OLCA 2WE5A 2W21A 3LL9A 2V4YA 4USJA 2BNDA 2R98A 1OHBA 3C1MA 3S6HA 3S6KA 3LKKA 3EK5A 3QURA 2J4KA 1GS5A 1B7BA 2WXBA 4I49A 1E19A 3U6UA 3QVHA 2BUFA 2WE4A 2BRIA 2J0WA 2BRXA 3QVFA 2OGXB 3D2PA 4NDQA 4NDRB 4JZ7A 4KZTA 3D41A 2JJ4A 2CDQA 4F6TB 1OH9A 3AAWA 2JI5A 4NDOA 4A7XA 2BNFA 3S6GA 3L86A 4NDQB 4NDPB 2R8VA 3K4YA 2HMFA 2J5TA 1OHAA 2V5HA 2J4LA 3EK6A 3ZZHA 2JJXA 2J4JA 1YBDA 3ZZFA 2BTYA 3C20A 2J5VA 4AB7A 3ZZIA 4JZ8A 3TVIA 3C1NA 3AB4A 2VA1A 2AP9A 3LL5A 3NWYA 4A7WA 4NDOB 3D2MA 2AKOA 1GSJA 2BMUA 3QUNA 3K56A 3WWNA 3K52A 3D40A 3B8GA 3K4OA 4AXSA 2OGXA 4NDRA 4Q1TA 2RD5A 3ZZGA 2A1FA 3WWMA 2IJ9A 2J0XA 4JZ9A 3AB2A 4F6TA 1Z9DA 2X2WA 3KZFA 2E9YA 3T7BA 2BNEA 3L76A 4NDPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3QUO A;  4OLC A;  2WE5 A;  2W21 A;  3LL9 A;  2V4Y A;  4USJ A;  2BND A;  2R98 A;  1OHB A;  3C1M A;  3S6H A;  3S6K A;  3LKK A;  3EK5 A;  3QUR A;  2J4K A;  1GS5 A;  1B7B A;  2WXB A;  4I49 A;  1E19 A;  3U6U A;  3QVH A;  2BUF A;  2WE4 A;  2BRI A;  2J0W A;  2BRX A;  3QVF A;  2OGX B;  3D2P A;  4NDQ A;  4NDR B;  4JZ7 A;  4KZT A;  3D41 A;  2JJ4 A;  2CDQ A;  4F6T B;  1OH9 A;  3AAW A;  2JI5 A;  4NDO A;  4A7X A;  2BNF A;  3S6G A;  3L86 A;  4NDQ B;  4NDP B;  2R8V A;  3K4Y A;  2HMF A;  2J5T A;  1OHA A;  2V5H A;  2J4L A;  3EK6 A;  3ZZH A;  2JJX A;  2J4J A;  1YBD A;  3ZZF A;  2BTY A;  3C20 A;  2J5V A;  4AB7 A;  3ZZI A;  4JZ8 A;  3TVI A;  3C1N A;  3AB4 A;  2VA1 A;  2AP9 A;  3LL5 A;  3NWY A;  4A7W A;  4NDO B;  3D2M A;  2AKO A;  1GSJ A;  2BMU A;  3QUN A;  3K56 A;  3WWN A;  3K52 A;  3D40 A;  3B8G A;  3K4O A;  4AXS A;  2OGX A;  4NDR A;  4Q1T A;  2RD5 A;  3ZZG A;  2A1F A;  3WWM A;  2IJ9 A;  2J0X A;  4JZ9 A;  3AB2 A;  4F6T A;  1Z9D A;  2X2W A;  3KZF A;  2E9Y A;  3T7B A;  2BNE A;  3L76 A;  4NDP A; 
#chains in the Genus database with same CATH topology
 3QUO A;  4OLC A;  2WE5 A;  2W21 A;  3LL9 A;  2V4Y A;  4USJ A;  2BND A;  2R98 A;  1OHB A;  3C1M A;  3S6H A;  3S6K A;  3LKK A;  3EK5 A;  3QUR A;  2J4K A;  1GS5 A;  1B7B A;  2WXB A;  4I49 A;  1E19 A;  3U6U A;  3QVH A;  2BUF A;  2WE4 A;  2BRI A;  2J0W A;  2BRX A;  3QVF A;  2OGX B;  3D2P A;  4NDQ A;  4NDR B;  4JZ7 A;  4KZT A;  3D41 A;  2JJ4 A;  2CDQ A;  4F6T B;  1OH9 A;  3AAW A;  2JI5 A;  4NDO A;  4A7X A;  2BNF A;  3S6G A;  3L86 A;  4NDQ B;  4NDP B;  2R8V A;  3K4Y A;  2HMF A;  2J5T A;  1OHA A;  2V5H A;  2J4L A;  3EK6 A;  3ZZH A;  2JJX A;  2J4J A;  1YBD A;  3ZZF A;  2BTY A;  3C20 A;  2J5V A;  4AB7 A;  3ZZI A;  4JZ8 A;  3TVI A;  3C1N A;  3AB4 A;  2VA1 A;  2AP9 A;  3LL5 A;  3NWY A;  4A7W A;  4NDO B;  3D2M A;  2AKO A;  1GSJ A;  2BMU A;  3QUN A;  3K56 A;  3WWN A;  3K52 A;  3D40 A;  3B8G A;  3K4O A;  4AXS A;  2OGX A;  4NDR A;  4Q1T A;  2RD5 A;  3ZZG A;  2A1F A;  3WWM A;  2IJ9 A;  2J0X A;  4JZ9 A;  3AB2 A;  4F6T A;  1Z9D A;  2X2W A;  3KZF A;  2E9Y A;  3T7B A;  2BNE A;  3L76 A;  4NDP A; 
#chains in the Genus database with same CATH homology
 3QUO A;  4OLC A;  2WE5 A;  2W21 A;  3LL9 A;  2V4Y A;  4USJ A;  2BND A;  2R98 A;  1OHB A;  3C1M A;  3S6H A;  3S6K A;  3LKK A;  3EK5 A;  3QUR A;  2J4K A;  1GS5 A;  1B7B A;  2WXB A;  4I49 A;  1E19 A;  3U6U A;  3QVH A;  2BUF A;  2WE4 A;  2BRI A;  2J0W A;  2BRX A;  3QVF A;  2OGX B;  3D2P A;  4NDQ A;  4NDR B;  4JZ7 A;  4KZT A;  3D41 A;  2JJ4 A;  2CDQ A;  4F6T B;  1OH9 A;  3AAW A;  2JI5 A;  4NDO A;  4A7X A;  2BNF A;  3S6G A;  3L86 A;  4NDQ B;  4NDP B;  2R8V A;  3K4Y A;  2HMF A;  2J5T A;  1OHA A;  2V5H A;  2J4L A;  3EK6 A;  3ZZH A;  2JJX A;  2J4J A;  1YBD A;  3ZZF A;  2BTY A;  3C20 A;  2J5V A;  4AB7 A;  3ZZI A;  4JZ8 A;  3TVI A;  3C1N A;  3AB4 A;  2VA1 A;  2AP9 A;  3LL5 A;  3NWY A;  4A7W A;  4NDO B;  3D2M A;  2AKO A;  1GSJ A;  2BMU A;  3QUN A;  3K56 A;  3WWN A;  3K52 A;  3D40 A;  3B8G A;  3K4O A;  4AXS A;  2OGX A;  4NDR A;  4Q1T A;  2RD5 A;  3ZZG A;  2A1F A;  3WWM A;  2IJ9 A;  2J0X A;  4JZ9 A;  3AB2 A;  4F6T A;  1Z9D A;  2X2W A;  3KZF A;  2E9Y A;  3T7B A;  2BNE A;  3L76 A;  4NDP A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...