2IJ9A

Crystal structure of uridylate kinase from archaeoglobus fulgidus
Total Genus 72
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
72
sequence length
219
structure length
214
Chain Sequence
MKVVLSLGGSVLSNESEKIREFAKTIESVAQQNQVFVVVGGGKLAREYIKSARELGASETFCDYIGIAATRLNAMLLISAIPSAAKKVPVDFMEAEELSKLYRVVVMGGTFPGHTTDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEIVSRGTNVVIDLLAAKIIERSKIKTYVILGTPENIMKAVKGEAVGTVIA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Uridylate kinase
publication title Crystal Structure of Uridylate Kinase from Archaeoglobus Fulgidus
rcsb
source organism Archaeoglobus fulgidus
molecule tags Transferase
total genus 72
structure length 214
sequence length 219
chains with identical sequence B
ec nomenclature ec 2.7.4.22: UMP kinase.
pdb deposition date 2006-09-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 2ij9A00
3QVHA 3QUNA 3QVFA 2J0XA 3AB4A 3LL9A 2BTYA 4NDRA 2BNEA 4NDPB 1YBDA 3C1MA 3D41A 2AP9A 2OGXB 2JJXA 3ZZHA 3NWYA 2WE5A 2JI5A 2J0WA 2JJ4A 2BNDA 2BRXA 4NDOA 3D2PA 4KZTA 3AB2A 2WE4A 2J5VA 3T7BA 1GS5A 2WXBA 2BNFA 3S6GA 2RD5A 2J4KA 4I49A 4NDQB 4F6TB 2J5TA 4NDPA 3LKKA 3D40A 1OHAA 3K56A 2E9YA 3ZZIA 4USJA 3K4YA 2R98A 4A7WA 2OGXA 2J4LA 2V5HA 2BRIA 1GSJA 3K52A 3ZZGA 2BUFA 3C20A 1B7BA 3C1NA 3U6UA 3D2MA 4AXSA 1OHBA 3QURA 3QUOA 3S6HA 2VA1A 2BMUA 3S6KA 3WWNA 3L86A 2V4YA 4JZ9A 2A1FA 2W21A 4NDRB 4Q1TA 4NDQA 1OH9A 1Z9DA 2IJ9A 4F6TA 3B8GA 4A7XA 3TVIA 2R8VA 3KZFA 3EK6A 2HMFA 2X2WA 3AAWA 3L76A 2J4JA 4NDOB 2AKOA 3ZZFA 4OLCA 4JZ8A 3EK5A 4AB7A 1E19A 3LL5A 3K4OA 4JZ7A 2CDQA 3WWMA
chains in the Genus database with same CATH superfamily
3QVHA 3QUNA 3QVFA 2J0XA 3AB4A 3LL9A 2BTYA 4NDRA 2BNEA 4NDPB 1YBDA 3C1MA 3D41A 2AP9A 2OGXB 2JJXA 3ZZHA 3NWYA 2WE5A 2JI5A 2J0WA 2JJ4A 2BNDA 2BRXA 4NDOA 3D2PA 4KZTA 3AB2A 2WE4A 2J5VA 3T7BA 1GS5A 2WXBA 2BNFA 3S6GA 2RD5A 2J4KA 4I49A 4NDQB 4F6TB 2J5TA 4NDPA 3LKKA 3D40A 1OHAA 3K56A 2E9YA 3ZZIA 4USJA 3K4YA 2R98A 4A7WA 2OGXA 2J4LA 2V5HA 2BRIA 1GSJA 3K52A 3ZZGA 2BUFA 3C20A 1B7BA 3C1NA 3U6UA 3D2MA 4AXSA 1OHBA 3QURA 3QUOA 3S6HA 2VA1A 2BMUA 3S6KA 3WWNA 3L86A 2V4YA 4JZ9A 2A1FA 2W21A 4NDRB 4Q1TA 4NDQA 1OH9A 1Z9DA 2IJ9A 4F6TA 3B8GA 4A7XA 3TVIA 2R8VA 3KZFA 3EK6A 2HMFA 2X2WA 3AAWA 3L76A 2J4JA 4NDOB 2AKOA 3ZZFA 4OLCA 4JZ8A 3EK5A 4AB7A 1E19A 3LL5A 3K4OA 4JZ7A 2CDQA 3WWMA
chains in the Genus database with same CATH topology
3QVHA 3QUNA 3QVFA 2J0XA 3AB4A 3LL9A 2BTYA 4NDRA 2BNEA 4NDPB 1YBDA 3C1MA 3D41A 2AP9A 2OGXB 2JJXA 3ZZHA 3NWYA 2WE5A 2JI5A 2J0WA 2JJ4A 2BNDA 2BRXA 4NDOA 3D2PA 4KZTA 3AB2A 2WE4A 2J5VA 3T7BA 1GS5A 2WXBA 2BNFA 3S6GA 2RD5A 2J4KA 4I49A 4NDQB 4F6TB 2J5TA 4NDPA 3LKKA 3D40A 1OHAA 3K56A 2E9YA 3ZZIA 4USJA 3K4YA 2R98A 4A7WA 2OGXA 2J4LA 2V5HA 2BRIA 1GSJA 3K52A 3ZZGA 2BUFA 3C20A 1B7BA 3C1NA 3U6UA 3D2MA 4AXSA 1OHBA 3QURA 3QUOA 3S6HA 2VA1A 2BMUA 3S6KA 3WWNA 3L86A 2V4YA 4JZ9A 2A1FA 2W21A 4NDRB 4Q1TA 4NDQA 1OH9A 1Z9DA 2IJ9A 4F6TA 3B8GA 4A7XA 3TVIA 2R8VA 3KZFA 3EK6A 2HMFA 2X2WA 3AAWA 3L76A 2J4JA 4NDOB 2AKOA 3ZZFA 4OLCA 4JZ8A 3EK5A 4AB7A 1E19A 3LL5A 3K4OA 4JZ7A 2CDQA 3WWMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3QVH A;  3QUN A;  3QVF A;  2J0X A;  3AB4 A;  3LL9 A;  2BTY A;  4NDR A;  2BNE A;  4NDP B;  1YBD A;  3C1M A;  3D41 A;  2AP9 A;  2OGX B;  2JJX A;  3ZZH A;  3NWY A;  2WE5 A;  2JI5 A;  2J0W A;  2JJ4 A;  2BND A;  2BRX A;  4NDO A;  3D2P A;  4KZT A;  3AB2 A;  2WE4 A;  2J5V A;  3T7B A;  1GS5 A;  2WXB A;  2BNF A;  3S6G A;  2RD5 A;  2J4K A;  4I49 A;  4NDQ B;  4F6T B;  2J5T A;  4NDP A;  3LKK A;  3D40 A;  1OHA A;  3K56 A;  2E9Y A;  3ZZI A;  4USJ A;  3K4Y A;  2R98 A;  4A7W A;  2OGX A;  2J4L A;  2V5H A;  2BRI A;  1GSJ A;  3K52 A;  3ZZG A;  2BUF A;  3C20 A;  1B7B A;  3C1N A;  3U6U A;  3D2M A;  4AXS A;  1OHB A;  3QUR A;  3QUO A;  3S6H A;  2VA1 A;  2BMU A;  3S6K A;  3WWN A;  3L86 A;  2V4Y A;  4JZ9 A;  2A1F A;  2W21 A;  4NDR B;  4Q1T A;  4NDQ A;  1OH9 A;  1Z9D A;  2IJ9 A;  4F6T A;  3B8G A;  4A7X A;  3TVI A;  2R8V A;  3KZF A;  3EK6 A;  2HMF A;  2X2W A;  3AAW A;  3L76 A;  2J4J A;  4NDO B;  2AKO A;  3ZZF A;  4OLC A;  4JZ8 A;  3EK5 A;  4AB7 A;  1E19 A;  3LL5 A;  3K4O A;  4JZ7 A;  2CDQ A;  3WWM A; 
#chains in the Genus database with same CATH topology
 3QVH A;  3QUN A;  3QVF A;  2J0X A;  3AB4 A;  3LL9 A;  2BTY A;  4NDR A;  2BNE A;  4NDP B;  1YBD A;  3C1M A;  3D41 A;  2AP9 A;  2OGX B;  2JJX A;  3ZZH A;  3NWY A;  2WE5 A;  2JI5 A;  2J0W A;  2JJ4 A;  2BND A;  2BRX A;  4NDO A;  3D2P A;  4KZT A;  3AB2 A;  2WE4 A;  2J5V A;  3T7B A;  1GS5 A;  2WXB A;  2BNF A;  3S6G A;  2RD5 A;  2J4K A;  4I49 A;  4NDQ B;  4F6T B;  2J5T A;  4NDP A;  3LKK A;  3D40 A;  1OHA A;  3K56 A;  2E9Y A;  3ZZI A;  4USJ A;  3K4Y A;  2R98 A;  4A7W A;  2OGX A;  2J4L A;  2V5H A;  2BRI A;  1GSJ A;  3K52 A;  3ZZG A;  2BUF A;  3C20 A;  1B7B A;  3C1N A;  3U6U A;  3D2M A;  4AXS A;  1OHB A;  3QUR A;  3QUO A;  3S6H A;  2VA1 A;  2BMU A;  3S6K A;  3WWN A;  3L86 A;  2V4Y A;  4JZ9 A;  2A1F A;  2W21 A;  4NDR B;  4Q1T A;  4NDQ A;  1OH9 A;  1Z9D A;  2IJ9 A;  4F6T A;  3B8G A;  4A7X A;  3TVI A;  2R8V A;  3KZF A;  3EK6 A;  2HMF A;  2X2W A;  3AAW A;  3L76 A;  2J4J A;  4NDO B;  2AKO A;  3ZZF A;  4OLC A;  4JZ8 A;  3EK5 A;  4AB7 A;  1E19 A;  3LL5 A;  3K4O A;  4JZ7 A;  2CDQ A;  3WWM A; 
#chains in the Genus database with same CATH homology
 3QVH A;  3QUN A;  3QVF A;  2J0X A;  3AB4 A;  3LL9 A;  2BTY A;  4NDR A;  2BNE A;  4NDP B;  1YBD A;  3C1M A;  3D41 A;  2AP9 A;  2OGX B;  2JJX A;  3ZZH A;  3NWY A;  2WE5 A;  2JI5 A;  2J0W A;  2JJ4 A;  2BND A;  2BRX A;  4NDO A;  3D2P A;  4KZT A;  3AB2 A;  2WE4 A;  2J5V A;  3T7B A;  1GS5 A;  2WXB A;  2BNF A;  3S6G A;  2RD5 A;  2J4K A;  4I49 A;  4NDQ B;  4F6T B;  2J5T A;  4NDP A;  3LKK A;  3D40 A;  1OHA A;  3K56 A;  2E9Y A;  3ZZI A;  4USJ A;  3K4Y A;  2R98 A;  4A7W A;  2OGX A;  2J4L A;  2V5H A;  2BRI A;  1GSJ A;  3K52 A;  3ZZG A;  2BUF A;  3C20 A;  1B7B A;  3C1N A;  3U6U A;  3D2M A;  4AXS A;  1OHB A;  3QUR A;  3QUO A;  3S6H A;  2VA1 A;  2BMU A;  3S6K A;  3WWN A;  3L86 A;  2V4Y A;  4JZ9 A;  2A1F A;  2W21 A;  4NDR B;  4Q1T A;  4NDQ A;  1OH9 A;  1Z9D A;  2IJ9 A;  4F6T A;  3B8G A;  4A7X A;  3TVI A;  2R8V A;  3KZF A;  3EK6 A;  2HMF A;  2X2W A;  3AAW A;  3L76 A;  2J4J A;  4NDO B;  2AKO A;  3ZZF A;  4OLC A;  4JZ8 A;  3EK5 A;  4AB7 A;  1E19 A;  3LL5 A;  3K4O A;  4JZ7 A;  2CDQ A;  3WWM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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