2IJ9A

Crystal structure of uridylate kinase from archaeoglobus fulgidus
Total Genus 72
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
72
sequence length
219
structure length
214
Chain Sequence
MKVVLSLGGSVLSNESEKIREFAKTIESVAQQNQVFVVVGGGKLAREYIKSARELGASETFCDYIGIAATRLNAMLLISAIPSAAKKVPVDFMEAEELSKLYRVVVMGGTFPGHTTDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEIVSRGTNVVIDLLAAKIIERSKIKTYVILGTPENIMKAVKGEAVGTVIA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of Uridylate Kinase from Archaeoglobus Fulgidus
rcsb
source organism Archaeoglobus fulgidus
molecule tags Transferase
molecule keywords Uridylate kinase
total genus 72
structure length 214
sequence length 219
chains with identical sequence B
ec nomenclature ec 2.7.4.22: UMP kinase.
pdb deposition date 2006-09-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 2ij9A00
2WE5A 4AB7A 3C1MA 3LL5A 4NDRB 2V5HA 3C20A 3L76A 3QURA 1OH9A 3S6GA 3WWMA 2BNEA 2BNDA 2W21A 2J5VA 2BMUA 3EK6A 1Z9DA 3LL9A 2AKOA 2JJ4A 2WE4A 4JZ9A 4NDQA 4F6TA 2J4KA 4A7WA 3T7BA 3AAWA 3K4YA 3D2MA 3D2PA 1E19A 2BRIA 2BTYA 3U6UA 4Q1TA 2CDQA 4JZ8A 3WWNA 4A7XA 1YBDA 3QVFA 4NDOB 3D40A 2VA1A 1B7BA 1GS5A 3L86A 2WXBA 2HMFA 3QUNA 3ZZHA 2R8VA 2BNFA 3AB2A 1GSJA 3EK5A 4NDOA 2RD5A 3QUOA 2J5TA 4KZTA 3B8GA 3ZZIA 3NWYA 2J4LA 3KZFA 4NDQB 2J0XA 4JZ7A 2R98A 2OGXB 3ZZGA 3K56A 3D41A 4NDPB 2J4JA 3TVIA 4USJA 3LKKA 3ZZFA 2OGXA 2AP9A 2BUFA 2V4YA 3AB4A 2JI5A 4AXSA 3C1NA 4NDPA 4F6TB 2JJXA 1OHAA 2J0WA 2A1FA 2E9YA 3K4OA 3S6HA 4I49A 4NDRA 3QVHA 3S6KA 3K52A 1OHBA 2BRXA 2X2WA 2IJ9A 4OLCA
chains in the Genus database with same CATH superfamily
2WE5A 4AB7A 3C1MA 3LL5A 4NDRB 2V5HA 3C20A 3L76A 3QURA 1OH9A 3S6GA 3WWMA 2BNEA 2BNDA 2W21A 2J5VA 2BMUA 3EK6A 1Z9DA 3LL9A 2AKOA 2JJ4A 2WE4A 4JZ9A 4NDQA 4F6TA 2J4KA 4A7WA 3T7BA 3AAWA 3K4YA 3D2MA 3D2PA 1E19A 2BRIA 2BTYA 3U6UA 4Q1TA 2CDQA 4JZ8A 3WWNA 4A7XA 1YBDA 3QVFA 4NDOB 3D40A 2VA1A 1B7BA 1GS5A 3L86A 2WXBA 2HMFA 3QUNA 3ZZHA 2R8VA 2BNFA 3AB2A 1GSJA 3EK5A 4NDOA 2RD5A 3QUOA 2J5TA 4KZTA 3B8GA 3ZZIA 3NWYA 2J4LA 3KZFA 4NDQB 2J0XA 4JZ7A 2R98A 2OGXB 3ZZGA 3K56A 3D41A 4NDPB 2J4JA 3TVIA 4USJA 3LKKA 3ZZFA 2OGXA 2AP9A 2BUFA 2V4YA 3AB4A 2JI5A 4AXSA 3C1NA 4NDPA 4F6TB 2JJXA 1OHAA 2J0WA 2A1FA 2E9YA 3K4OA 3S6HA 4I49A 4NDRA 3QVHA 3S6KA 3K52A 1OHBA 2BRXA 2X2WA 2IJ9A 4OLCA
chains in the Genus database with same CATH topology
2WE5A 4AB7A 3C1MA 3LL5A 4NDRB 2V5HA 3C20A 3L76A 3QURA 1OH9A 3S6GA 3WWMA 2BNEA 2BNDA 2W21A 2J5VA 2BMUA 3EK6A 1Z9DA 3LL9A 2AKOA 2JJ4A 2WE4A 4JZ9A 4NDQA 4F6TA 2J4KA 4A7WA 3T7BA 3AAWA 3K4YA 3D2MA 3D2PA 1E19A 2BRIA 2BTYA 3U6UA 4Q1TA 2CDQA 4JZ8A 3WWNA 4A7XA 1YBDA 3QVFA 4NDOB 3D40A 2VA1A 1B7BA 1GS5A 3L86A 2WXBA 2HMFA 3QUNA 3ZZHA 2R8VA 2BNFA 3AB2A 1GSJA 3EK5A 4NDOA 2RD5A 3QUOA 2J5TA 4KZTA 3B8GA 3ZZIA 3NWYA 2J4LA 3KZFA 4NDQB 2J0XA 4JZ7A 2R98A 2OGXB 3ZZGA 3K56A 3D41A 4NDPB 2J4JA 3TVIA 4USJA 3LKKA 3ZZFA 2OGXA 2AP9A 2BUFA 2V4YA 3AB4A 2JI5A 4AXSA 3C1NA 4NDPA 4F6TB 2JJXA 1OHAA 2J0WA 2A1FA 2E9YA 3K4OA 3S6HA 4I49A 4NDRA 3QVHA 3S6KA 3K52A 1OHBA 2BRXA 2X2WA 2IJ9A 4OLCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2WE5 A;  4AB7 A;  3C1M A;  3LL5 A;  4NDR B;  2V5H A;  3C20 A;  3L76 A;  3QUR A;  1OH9 A;  3S6G A;  3WWM A;  2BNE A;  2BND A;  2W21 A;  2J5V A;  2BMU A;  3EK6 A;  1Z9D A;  3LL9 A;  2AKO A;  2JJ4 A;  2WE4 A;  4JZ9 A;  4NDQ A;  4F6T A;  2J4K A;  4A7W A;  3T7B A;  3AAW A;  3K4Y A;  3D2M A;  3D2P A;  1E19 A;  2BRI A;  2BTY A;  3U6U A;  4Q1T A;  2CDQ A;  4JZ8 A;  3WWN A;  4A7X A;  1YBD A;  3QVF A;  4NDO B;  3D40 A;  2VA1 A;  1B7B A;  1GS5 A;  3L86 A;  2WXB A;  2HMF A;  3QUN A;  3ZZH A;  2R8V A;  2BNF A;  3AB2 A;  1GSJ A;  3EK5 A;  4NDO A;  2RD5 A;  3QUO A;  2J5T A;  4KZT A;  3B8G A;  3ZZI A;  3NWY A;  2J4L A;  3KZF A;  4NDQ B;  2J0X A;  4JZ7 A;  2R98 A;  2OGX B;  3ZZG A;  3K56 A;  3D41 A;  4NDP B;  2J4J A;  3TVI A;  4USJ A;  3LKK A;  3ZZF A;  2OGX A;  2AP9 A;  2BUF A;  2V4Y A;  3AB4 A;  2JI5 A;  4AXS A;  3C1N A;  4NDP A;  4F6T B;  2JJX A;  1OHA A;  2J0W A;  2A1F A;  2E9Y A;  3K4O A;  3S6H A;  4I49 A;  4NDR A;  3QVH A;  3S6K A;  3K52 A;  1OHB A;  2BRX A;  2X2W A;  2IJ9 A;  4OLC A; 
#chains in the Genus database with same CATH topology
 2WE5 A;  4AB7 A;  3C1M A;  3LL5 A;  4NDR B;  2V5H A;  3C20 A;  3L76 A;  3QUR A;  1OH9 A;  3S6G A;  3WWM A;  2BNE A;  2BND A;  2W21 A;  2J5V A;  2BMU A;  3EK6 A;  1Z9D A;  3LL9 A;  2AKO A;  2JJ4 A;  2WE4 A;  4JZ9 A;  4NDQ A;  4F6T A;  2J4K A;  4A7W A;  3T7B A;  3AAW A;  3K4Y A;  3D2M A;  3D2P A;  1E19 A;  2BRI A;  2BTY A;  3U6U A;  4Q1T A;  2CDQ A;  4JZ8 A;  3WWN A;  4A7X A;  1YBD A;  3QVF A;  4NDO B;  3D40 A;  2VA1 A;  1B7B A;  1GS5 A;  3L86 A;  2WXB A;  2HMF A;  3QUN A;  3ZZH A;  2R8V A;  2BNF A;  3AB2 A;  1GSJ A;  3EK5 A;  4NDO A;  2RD5 A;  3QUO A;  2J5T A;  4KZT A;  3B8G A;  3ZZI A;  3NWY A;  2J4L A;  3KZF A;  4NDQ B;  2J0X A;  4JZ7 A;  2R98 A;  2OGX B;  3ZZG A;  3K56 A;  3D41 A;  4NDP B;  2J4J A;  3TVI A;  4USJ A;  3LKK A;  3ZZF A;  2OGX A;  2AP9 A;  2BUF A;  2V4Y A;  3AB4 A;  2JI5 A;  4AXS A;  3C1N A;  4NDP A;  4F6T B;  2JJX A;  1OHA A;  2J0W A;  2A1F A;  2E9Y A;  3K4O A;  3S6H A;  4I49 A;  4NDR A;  3QVH A;  3S6K A;  3K52 A;  1OHB A;  2BRX A;  2X2W A;  2IJ9 A;  4OLC A; 
#chains in the Genus database with same CATH homology
 2WE5 A;  4AB7 A;  3C1M A;  3LL5 A;  4NDR B;  2V5H A;  3C20 A;  3L76 A;  3QUR A;  1OH9 A;  3S6G A;  3WWM A;  2BNE A;  2BND A;  2W21 A;  2J5V A;  2BMU A;  3EK6 A;  1Z9D A;  3LL9 A;  2AKO A;  2JJ4 A;  2WE4 A;  4JZ9 A;  4NDQ A;  4F6T A;  2J4K A;  4A7W A;  3T7B A;  3AAW A;  3K4Y A;  3D2M A;  3D2P A;  1E19 A;  2BRI A;  2BTY A;  3U6U A;  4Q1T A;  2CDQ A;  4JZ8 A;  3WWN A;  4A7X A;  1YBD A;  3QVF A;  4NDO B;  3D40 A;  2VA1 A;  1B7B A;  1GS5 A;  3L86 A;  2WXB A;  2HMF A;  3QUN A;  3ZZH A;  2R8V A;  2BNF A;  3AB2 A;  1GSJ A;  3EK5 A;  4NDO A;  2RD5 A;  3QUO A;  2J5T A;  4KZT A;  3B8G A;  3ZZI A;  3NWY A;  2J4L A;  3KZF A;  4NDQ B;  2J0X A;  4JZ7 A;  2R98 A;  2OGX B;  3ZZG A;  3K56 A;  3D41 A;  4NDP B;  2J4J A;  3TVI A;  4USJ A;  3LKK A;  3ZZF A;  2OGX A;  2AP9 A;  2BUF A;  2V4Y A;  3AB4 A;  2JI5 A;  4AXS A;  3C1N A;  4NDP A;  4F6T B;  2JJX A;  1OHA A;  2J0W A;  2A1F A;  2E9Y A;  3K4O A;  3S6H A;  4I49 A;  4NDR A;  3QVH A;  3S6K A;  3K52 A;  1OHB A;  2BRX A;  2X2W A;  2IJ9 A;  4OLC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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